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Title: Complete Genome Sequence of the Novel Roseimicrobium sp. Strain ORNL1, a Verrucomicrobium Isolated from the Populus deltoides Rhizosphere

Abstract

Roseimicrobium sp. strain ORNL1 is a soil bacterium that belongs to the phylum Verrucomicrobia and was isolated from the rhizosphere of a forest Eastern cottonwood tree, Populus deltoides, in Tennessee. Its 7.9-Mb chromosome was completely sequenced using PacBio long reads and is predicted to encode 6,288 proteins and 76 RNAs.

Authors:
ORCiD logo ; ORCiD logo
  1. Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States)
Publication Date:
DOE Contract Number:  
AC05-00OR22725
Product Type:
Dataset
Research Org.:
Oak Ridge National Laboratory (ORNL), Oak Ridge, TN (United States) U.S. Department of Energy Systems Biology Knowledgebase
Sponsoring Org.:
USDOE Office of Science (SC), Biological and Environmental Research (BER)
Subject:
59 BASIC BIOLOGICAL SCIENCES
Keywords:
bioinformatics, genome, genome announcement
OSTI Identifier:
1637512
DOI:
https://doi.org/10.25982/56021.26/1637512

Citation Formats

Podar, Mircea, and Crockett, Zachary. Complete Genome Sequence of the Novel Roseimicrobium sp. Strain ORNL1, a Verrucomicrobium Isolated from the Populus deltoides Rhizosphere. United States: N. p., 2020. Web. doi:10.25982/56021.26/1637512.
Podar, Mircea, & Crockett, Zachary. Complete Genome Sequence of the Novel Roseimicrobium sp. Strain ORNL1, a Verrucomicrobium Isolated from the Populus deltoides Rhizosphere. United States. doi:https://doi.org/10.25982/56021.26/1637512
Podar, Mircea, and Crockett, Zachary. 2020. "Complete Genome Sequence of the Novel Roseimicrobium sp. Strain ORNL1, a Verrucomicrobium Isolated from the Populus deltoides Rhizosphere". United States. doi:https://doi.org/10.25982/56021.26/1637512. https://www.osti.gov/servlets/purl/1637512. Pub date:Tue Jul 07 00:00:00 EDT 2020
@article{osti_1637512,
title = {Complete Genome Sequence of the Novel Roseimicrobium sp. Strain ORNL1, a Verrucomicrobium Isolated from the Populus deltoides Rhizosphere},
author = {Podar, Mircea and Crockett, Zachary},
abstractNote = {Roseimicrobium sp. strain ORNL1 is a soil bacterium that belongs to the phylum Verrucomicrobia and was isolated from the rhizosphere of a forest Eastern cottonwood tree, Populus deltoides, in Tennessee. Its 7.9-Mb chromosome was completely sequenced using PacBio long reads and is predicted to encode 6,288 proteins and 76 RNAs.},
doi = {10.25982/56021.26/1637512},
journal = {},
number = ,
volume = ,
place = {United States},
year = {2020},
month = {7}
}

Works referenced in this record:

Reconstruction and Validation of a Genome-Scale Metabolic Model for the Filamentous Fungus Neurospora crassa Using FARM
journal, July 2013


Identification, variation and transcription of pneumococcal repeat sequences
journal, February 2011


DNA–DNA hybridization values and their relationship to whole-genome sequence similarities
journal, January 2007


Efficiently gap-filling reaction networks
journal, June 2014


Prodigal: prokaryotic gene recognition and translation initiation site identification
journal, March 2010


The RAST Server: Rapid Annotations using Subsystems Technology
journal, January 2008


High-throughput generation, optimization and analysis of genome-scale metabolic models
journal, August 2010


Efficiently gap-filling reaction networks
journal, June 2014


NCBI prokaryotic genome annotation pipeline
journal, June 2016


The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)
journal, November 2013


The RAST Server: Rapid Annotations using Subsystems Technology
journal, January 2008


Reconstruction and Validation of a Genome-Scale Metabolic Model for the Filamentous Fungus Neurospora crassa Using FARM
journal, July 2013


    Works referencing / citing this record:

    High-throughput generation, optimization and analysis of genome-scale metabolic models
    journal, August 2010


    Efficiently gap-filling reaction networks
    journal, June 2014


    The RAST Server: Rapid Annotations using Subsystems Technology
    journal, January 2008


    DNA–DNA hybridization values and their relationship to whole-genome sequence similarities
    journal, January 2007


    The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)
    journal, November 2013


    NCBI prokaryotic genome annotation pipeline
    journal, June 2016


    Reconstruction and Validation of a Genome-Scale Metabolic Model for the Filamentous Fungus Neurospora crassa Using FARM
    journal, July 2013