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Complete Genome Sequence of the Novel Roseimicrobium sp. Strain ORNL1, a Verrucomicrobium Isolated from the Populus deltoides Rhizosphere

Journal Article · · Microbiology Resource Announcements
DOI:https://doi.org/10.1128/mra.00617-20· OSTI ID:1649154

Roseimicrobium sp. strain ORNL1 is a soil bacterium that belongs to the phylum Verrucomicrobia and was isolated from the rhizosphere of a forest Eastern cottonwood tree, Populus deltoides, in Tennessee. Its 7.9-Mb chromosome was completely sequenced using PacBio long reads and is predicted to encode 6,288 proteins and 76 RNAs.

Research Organization:
Oak Ridge National Laboratory (ORNL), Oak Ridge, TN (United States)
Sponsoring Organization:
USDOE Office of Science (SC), Biological and Environmental Research (BER)
Grant/Contract Number:
AC05-00OR22725
OSTI ID:
1649154
Journal Information:
Microbiology Resource Announcements, Journal Name: Microbiology Resource Announcements Journal Issue: 27 Vol. 9; ISSN 2576-098X
Publisher:
SSPA - American Society for MicrobiologyCopyright Statement
Country of Publication:
United States
Language:
English

References (12)

KBase: The United States Department of Energy Systems Biology Knowledgebase journal July 2018
Niche differentiation is spatially and temporally regulated in the rhizosphere journal January 2020
High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries journal November 2018
Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data journal April 2012
NCBI prokaryotic genome annotation pipeline journal June 2016
Roseimicrobium gellanilyticum gen. nov., sp. nov., a new member of the class Verrucomicrobiae journal October 2012
Consistent effects of nitrogen amendments on soil microbial communities and processes across biomes journal February 2012
Enrichment of Root Endophytic Bacteria from Populus deltoides and Single-Cell-Genomics Analysis journal July 2016
Critical Evaluation of Two Primers Commonly Used for Amplification of Bacterial 16S rRNA Genes journal February 2008
The Rhizosphere Selects for Particular Groups of Acidobacteria and Verrucomicrobia journal December 2013
Enrichment of Verrucomicrobia, Actinobacteria and Burkholderiales drives selection of bacterial community from soil by maize roots in a traditional milpa agroecosystem journal December 2018
Forest-to-pasture conversion increases the diversity of the phylum Verrucomicrobia in Amazon rainforest soils journal July 2015

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