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Complete Genome Sequence of the Novel Roseimicrobium sp. Strain ORNL1, a Verrucomicrobium Isolated from the Populus deltoides Rhizosphere

Dataset ·
 [1]
  1. Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States); Lawrence Berkeley National Laboratory

Roseimicrobium sp. strain ORNL1 is a soil bacterium that belongs to the phylum Verrucomicrobia and was isolated from the rhizosphere of a forest Eastern cottonwood tree, Populus deltoides, in Tennessee. Its 7.9-Mb chromosome was completely sequenced using PacBio long reads and is predicted to encode 6,288 proteins and 76 RNAs.

Research Organization:
Oak Ridge National Laboratory (ORNL), Oak Ridge, TN (United States) U.S. Department of Energy Systems Biology Knowledgebase
Sponsoring Organization:
USDOE Office of Science (SC), Biological and Environmental Research (BER)
DOE Contract Number:
AC05-00OR22725
OSTI ID:
1637512
Country of Publication:
United States
Language:
English

References (11)

The RAST Server: Rapid Annotations using Subsystems Technology journal January 2008
The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST) journal November 2013
Efficiently gap-filling reaction networks journal June 2014
NCBI prokaryotic genome annotation pipeline journal June 2016
High-throughput ANI Analysis of 90K Prokaryotic Genomes Reveals Clear Species Boundaries posted_content October 2017
RASTtk: A modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes journal February 2015
DNA–DNA hybridization values and their relationship to whole-genome sequence similarities journal January 2007
High-throughput generation, optimization and analysis of genome-scale metabolic models journal August 2010
Reconstruction and Validation of a Genome-Scale Metabolic Model for the Filamentous Fungus Neurospora crassa Using FARM journal July 2013
Identification, variation and transcription of pneumococcal repeat sequences journal February 2011
Prodigal: prokaryotic gene recognition and translation initiation site identification journal March 2010

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