skip to main content
OSTI.GOV title logo U.S. Department of Energy
Office of Scientific and Technical Information

Title: Complete Genome Sequence of Starkeya sp. Strain ORNL1, a Soil Alphaproteobacterium Isolated from the Rhizosphere of Populus deltoides

Dataset ·
ORCiD logo [1]
  1. Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States)
+ Show Author Affiliations

Starkeya sp. strain ORNL1 is an alphaproteobacterium isolated from the rhizosphere of an Eastern cottonwood tree. Starkeya spp. are physiologically versatile, using a wide range of nutritional and energetic resources and serving important ecological roles in carbon and sulfur cycling. The 6.3-Mb chromosome of Starkeya sp. strain ORNL1 was completely sequenced and will help in understanding nutrient cycles.

Research Organization:
Oak Ridge National Laboratory (ORNL), Oak Ridge, TN (United States) U.S. Department of Energy Systems Biology Knowledgebase
Sponsoring Organization:
USDOE Office of Science (SC), Biological and Environmental Research (BER)
DOE Contract Number:
AC05-00OR22725
OSTI ID:
1637507
Resource Relation:
Related Information: Complete Genome Sequence of Starkeya sp. Strain ORNL1, a Soil Alphaproteobacterium Isolated from the Rhizosphere of Populus deltoides Mircea Podar, Joel Turner, Leah H. Burdick, Dale A. Pelletier Microbiology Resource Announcements Jul 2020, 9 (27) e00644-20; DOI: 10.1128/MRA.00644-20
Country of Publication:
United States
Language:
English

References (14)

Proposal for the reclassification of Thiobacillus novellus as Starkeya novella gen. nov., comb. nov., in the alpha-subclass of the Proteobacteria. journal September 2000
Reconstruction and Validation of a Genome-Scale Metabolic Model for the Filamentous Fungus Neurospora crassa Using FARM journal July 2013
Starkeya koreensis sp. nov., isolated from rice straw journal October 2006
DNA–DNA hybridization values and their relationship to whole-genome sequence similarities journal January 2007
Efficiently gap-filling reaction networks journal June 2014
High-throughput ANI Analysis of 90K Prokaryotic Genomes Reveals Clear Species Boundaries posted_content October 2017
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes journal May 2015
Database indexing for production MegaBLAST searches journal June 2008
The RAST Server: Rapid Annotations using Subsystems Technology journal January 2008
High-throughput generation, optimization and analysis of genome-scale metabolic models journal August 2010
RASTtk: A modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes journal February 2015
NCBI prokaryotic genome annotation pipeline journal June 2016
The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST) journal November 2013
Complete genome sequence of the facultatively chemolithoautotrophic and methylotrophic alpha Proteobacterium Starkeya novella type strain (ATCC 8093T) journal September 2012

Similar Records

Complete Genome Sequence of Starkeya sp. Strain ORNL1, a Soil Alphaproteobacterium Isolated from the Rhizosphere of Populus deltoides
Journal Article · Thu Jul 02 00:00:00 EDT 2020 · Microbiology Resource Announcements · OSTI ID:1637507
+2 more
Complete Genome Sequence of the Novel Roseimicrobium sp. Strain ORNL1, a Verrucomicrobium Isolated from the Populus deltoides Rhizosphere
Journal Article · Thu Jul 02 00:00:00 EDT 2020 · Microbiology Resource Announcements · OSTI ID:1637507
+1 more
Complete Genome Sequence of the Novel Roseimicrobium sp. Strain ORNL1, a Verrucomicrobium Isolated from the Populus deltoides Rhizosphere
Dataset · Tue Jul 07 00:00:00 EDT 2020 · OSTI ID:1637507

Related Subjects

59 BASIC BIOLOGICAL SCIENCES
Bioinformatics
genome
genome announcement