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Complete Genome Sequence of Starkeya sp. Strain ORNL1, a Soil Alphaproteobacterium Isolated from the Rhizosphere of Populus deltoides

Journal Article · · Microbiology Resource Announcements
DOI:https://doi.org/10.1128/MRA.00644-20· OSTI ID:1635570

ABSTRACT

Starkeya sp. strain ORNL1 is an alphaproteobacterium isolated from the rhizosphere of an Eastern cottonwood tree. Starkeya spp. are physiologically versatile, using a wide range of nutritional and energetic resources and serving important ecological roles in carbon and sulfur cycling. The 6.3-Mb chromosome of Starkeya sp. strain ORNL1 was completely sequenced and will help in understanding nutrient cycles.

Sponsoring Organization:
USDOE
Grant/Contract Number:
AC05-00OR22725
OSTI ID:
1635570
Alternate ID(s):
OSTI ID: 1649135
Journal Information:
Microbiology Resource Announcements, Journal Name: Microbiology Resource Announcements Journal Issue: 27 Vol. 9; ISSN 2576-098X
Publisher:
SSPA - American Society for MicrobiologyCopyright Statement
Country of Publication:
United States
Language:
English

References (21)

Evidence for two pathways of thiosulfate oxidation in Starkeya novella (formerly Thiobacillus novellus ) journal March 2001
KBase: The United States Department of Energy Systems Biology Knowledgebase journal July 2018
High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries journal November 2018
Clustal W and Clustal X version 2.0 journal September 2007
Database indexing for production MegaBLAST searches journal June 2008
Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data journal April 2012
Prokka: rapid prokaryotic genome annotation journal March 2014
NCBI prokaryotic genome annotation pipeline journal June 2016
Isolation of some Bacteria Which Oxidize Thiosulfate journal January 1935
Proposal for the reclassification of Thiobacillus novellus as Starkeya novella gen. nov., comb. nov., in the alpha-subclass of the Proteobacteria. journal September 2000
Starkeya koreensis sp. nov., isolated from rice straw journal October 2006
Enrichment of Root Endophytic Bacteria from Populus deltoides and Single-Cell-Genomics Analysis journal July 2016
Critical Evaluation of Two Primers Commonly Used for Amplification of Bacterial 16S rRNA Genes journal February 2008
Oxalate, formate, formamide, and methanol metabolism in Thiobacillus novellus. journal January 1977
Carbon dioxide assimilation by Thiobacillus novellus under nutrient-limited mixotrophic conditions. journal January 1982
Thiobacillus Novellus journal January 1959
Complete Genome Sequence of Terriglobus albidus Strain ORNL, an Acidobacterium Isolated from the Populus deltoides Rhizosphere journal November 2019
CO 2 fixation by the facultative autotroph Thiobacillus novellus during autotrophy–heterotrophy interconversions journal November 1974
FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments journal March 2010
Metabolic adaptation and trophic strategies of soil bacteria—C1- metabolism and sulfur chemolithotrophy in Starkeya novella journal January 2013
Complete genome sequence of the facultatively chemolithoautotrophic and methylotrophic alpha Proteobacterium Starkeya novella type strain (ATCC 8093T) journal September 2012