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Title: Complete Genome Sequence of Starkeya sp. Strain ORNL1, a Soil Alphaproteobacterium Isolated from the Rhizosphere of Populus deltoides

Abstract

Starkeya sp. strain ORNL1 is an alphaproteobacterium isolated from the rhizosphere of an Eastern cottonwood tree. Starkeya spp. are physiologically versatile, using a wide range of nutritional and energetic resources and serving important ecological roles in carbon and sulfur cycling. The 6.3-Mb chromosome of Starkeya sp. strain ORNL1 was completely sequenced and will help in understanding nutrient cycles.

Authors:
ORCiD logo ; ORCiD logo
  1. Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States)
  2. Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States); Oak Ridge Associated Univ., Oak Ridge, TN (United States)
Publication Date:
DOE Contract Number:  
AC05-00OR22725
Product Type:
Dataset
Research Org.:
Oak Ridge National Laboratory (ORNL), Oak Ridge, TN (United States) U.S. Department of Energy Systems Biology Knowledgebase
Sponsoring Org.:
USDOE Office of Science (SC), Biological and Environmental Research (BER)
Subject:
59 BASIC BIOLOGICAL SCIENCES
Keywords:
Bioinformatics; genome; genome announcement
OSTI Identifier:
1637507
DOI:
https://doi.org/10.25982/55377.22/1637507

Citation Formats

podar, Mircea, and Crockett, Zachary. Complete Genome Sequence of Starkeya sp. Strain ORNL1, a Soil Alphaproteobacterium Isolated from the Rhizosphere of Populus deltoides. United States: N. p., 2020. Web. doi:10.25982/55377.22/1637507.
podar, Mircea, & Crockett, Zachary. Complete Genome Sequence of Starkeya sp. Strain ORNL1, a Soil Alphaproteobacterium Isolated from the Rhizosphere of Populus deltoides. United States. doi:https://doi.org/10.25982/55377.22/1637507
podar, Mircea, and Crockett, Zachary. 2020. "Complete Genome Sequence of Starkeya sp. Strain ORNL1, a Soil Alphaproteobacterium Isolated from the Rhizosphere of Populus deltoides". United States. doi:https://doi.org/10.25982/55377.22/1637507. https://www.osti.gov/servlets/purl/1637507. Pub date:Tue Jul 07 00:00:00 EDT 2020
@article{osti_1637507,
title = {Complete Genome Sequence of Starkeya sp. Strain ORNL1, a Soil Alphaproteobacterium Isolated from the Rhizosphere of Populus deltoides},
author = {podar, Mircea and Crockett, Zachary},
abstractNote = {Starkeya sp. strain ORNL1 is an alphaproteobacterium isolated from the rhizosphere of an Eastern cottonwood tree. Starkeya spp. are physiologically versatile, using a wide range of nutritional and energetic resources and serving important ecological roles in carbon and sulfur cycling. The 6.3-Mb chromosome of Starkeya sp. strain ORNL1 was completely sequenced and will help in understanding nutrient cycles.},
doi = {10.25982/55377.22/1637507},
journal = {},
number = ,
volume = ,
place = {United States},
year = {2020},
month = {7}
}

Works referenced in this record:

Reconstruction and Validation of a Genome-Scale Metabolic Model for the Filamentous Fungus Neurospora crassa Using FARM
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Efficiently gap-filling reaction networks
journal, June 2014


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journal, May 2015


Database indexing for production MegaBLAST searches
journal, June 2008


The RAST Server: Rapid Annotations using Subsystems Technology
journal, January 2008


High-throughput generation, optimization and analysis of genome-scale metabolic models
journal, August 2010


Efficiently gap-filling reaction networks
journal, June 2014


NCBI prokaryotic genome annotation pipeline
journal, June 2016


Complete genome sequence of the facultatively chemolithoautotrophic and methylotrophic alpha Proteobacterium Starkeya novella type strain (ATCC 8093T)
journal, September 2012


Proposal for the reclassification of Thiobacillus novellus as Starkeya novella gen. nov., comb. nov., in the alpha-subclass of the Proteobacteria.
journal, September 2000


Starkeya koreensis sp. nov., isolated from rice straw
journal, October 2006


DNA–DNA hybridization values and their relationship to whole-genome sequence similarities
journal, January 2007


The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)
journal, November 2013


Reconstruction and Validation of a Genome-Scale Metabolic Model for the Filamentous Fungus Neurospora crassa Using FARM
journal, July 2013


    Works referencing / citing this record:

    Starkeya koreensis sp. nov., isolated from rice straw
    journal, October 2006


    CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
    journal, May 2015


    NCBI prokaryotic genome annotation pipeline
    journal, June 2016


    High-throughput generation, optimization and analysis of genome-scale metabolic models
    journal, August 2010


    Efficiently gap-filling reaction networks
    journal, June 2014


    Database indexing for production MegaBLAST searches
    journal, June 2008


    Complete genome sequence of the facultatively chemolithoautotrophic and methylotrophic alpha Proteobacterium Starkeya novella type strain (ATCC 8093T)
    journal, September 2012


    The RAST Server: Rapid Annotations using Subsystems Technology
    journal, January 2008


    DNA–DNA hybridization values and their relationship to whole-genome sequence similarities
    journal, January 2007


    Proposal for the reclassification of Thiobacillus novellus as Starkeya novella gen. nov., comb. nov., in the alpha-subclass of the Proteobacteria.
    journal, September 2000


    The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)
    journal, November 2013


    Reconstruction and Validation of a Genome-Scale Metabolic Model for the Filamentous Fungus Neurospora crassa Using FARM
    journal, July 2013