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Title: Complete Genome Sequence of Terriglobus albidus Strain ORNL, an Acidobacterium Isolated from the Populus deltoides Rhizosphere

Abstract

This Narrative was used for a complete genome sequence of a new strain of Terriglobus albidus. It is a heterotrophic bacterium associated with the rhizophere of the eastern cottonwood tree (Populus deltoides).

Authors:

  1. Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States)
Publication Date:
DOE Contract Number:  
AC05-00OR22725; AC02-05CH11231
Research Org.:
Oak Ridge National Laboratory (ORNL), Oak Ridge, TN (United States); U.S. Department of Energy Systems Biology Knowledgebase
Sponsoring Org.:
USDOE Office of Science (SC), Biological and Environmental Research (BER)
Subject:
59 BASIC BIOLOGICAL SCIENCES
Keywords:
Genome; KBase; Biology
OSTI Identifier:
1635640
DOI:
https://doi.org/10.25982/44746.21/1635640

Citation Formats

Podar, Mircea. Complete Genome Sequence of Terriglobus albidus Strain ORNL, an Acidobacterium Isolated from the Populus deltoides Rhizosphere. United States: N. p., 2020. Web. doi:10.25982/44746.21/1635640.
Podar, Mircea. Complete Genome Sequence of Terriglobus albidus Strain ORNL, an Acidobacterium Isolated from the Populus deltoides Rhizosphere. United States. doi:https://doi.org/10.25982/44746.21/1635640
Podar, Mircea. 2020. "Complete Genome Sequence of Terriglobus albidus Strain ORNL, an Acidobacterium Isolated from the Populus deltoides Rhizosphere". United States. doi:https://doi.org/10.25982/44746.21/1635640. https://www.osti.gov/servlets/purl/1635640. Pub date:Thu Jul 02 00:00:00 EDT 2020
@article{osti_1635640,
title = {Complete Genome Sequence of Terriglobus albidus Strain ORNL, an Acidobacterium Isolated from the Populus deltoides Rhizosphere},
author = {Podar, Mircea},
abstractNote = {This Narrative was used for a complete genome sequence of a new strain of Terriglobus albidus. It is a heterotrophic bacterium associated with the rhizophere of the eastern cottonwood tree (Populus deltoides).},
doi = {10.25982/44746.21/1635640},
journal = {},
number = ,
volume = ,
place = {United States},
year = {Thu Jul 02 00:00:00 EDT 2020},
month = {Thu Jul 02 00:00:00 EDT 2020}
}

Works referenced in this record:

ISfinder: the reference centre for bacterial insertion sequences
journal, January 2006


Reconstruction and Validation of a Genome-Scale Metabolic Model for the Filamentous Fungus Neurospora crassa Using FARM
journal, July 2013


Efficiently gap-filling reaction networks
journal, June 2014


CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
journal, May 2015


The RAST Server: Rapid Annotations using Subsystems Technology
journal, January 2008


High-throughput generation, optimization and analysis of genome-scale metabolic models
journal, August 2010


Efficiently gap-filling reaction networks
journal, June 2014


BLAT---The BLAST-Like Alignment Tool
journal, March 2002


PhiSpy: a novel algorithm for finding prophages in bacterial genomes that combines similarity- and composition-based strategies
journal, May 2012


Terriglobus albidus sp. nov., a member of the family Acidobacteriaceae isolated from Namibian semiarid savannah soil
journal, October 2015


BLAST+: architecture and applications
journal, January 2009


tRNAscan-SE: A Program for Improved Detection of Transfer RNA Genes in Genomic Sequence
journal, March 1997


Prodigal: prokaryotic gene recognition and translation initiation site identification
journal, March 2010


Identification, variation and transcription of pneumococcal repeat sequences
journal, February 2011


tRNAscan-SE: A Program for Improved Detection of Transfer RNA Genes in Genomic Sequence
journal, March 1997


Prodigal: prokaryotic gene recognition and translation initiation site identification
journal, March 2010


NCBI prokaryotic genome annotation pipeline
journal, June 2016


The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)
journal, November 2013


Identifying bacterial genes and endosymbiont DNA with Glimmer
journal, January 2007


The effects of alternate optimal solutions in constraint-based genome-scale metabolic models
journal, October 2003


BLAST+: architecture and applications
journal, January 2009


The RAST Server: Rapid Annotations using Subsystems Technology
journal, January 2008


Identification, variation and transcription of pneumococcal repeat sequences
journal, February 2011


Translational recoding in archaea
journal, September 2012


Reconstruction and Validation of a Genome-Scale Metabolic Model for the Filamentous Fungus Neurospora crassa Using FARM
journal, July 2013