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Title: Monte Carlo simulation of proton track structure in biological matter

Journal Article · · European Physical Journal. D, Atomic, Molecular, Optical and Plasma Physics
 [1];  [1];  [2];  [1];  [1];  [1];  [3];  [4]
  1. CONICET - Univ. Nacional de Rosario, EKF Rosario (Argentina)
  2. Sandia National Lab. (SNL-NM), Albuquerque, NM (United States)
  3. Univ. de Lorraine, Metz (France)
  4. Univ. de Bordeaux, Gradignan (France)

Here, understanding the radiation-induced effects at the cellular and subcellular levels remains crucial for predicting the evolution of irradiated biological matter. In this context, Monte Carlo track-structure simulations have rapidly emerged among the most suitable and powerful tools. However, most existing Monte Carlo track-structure codes rely heavily on the use of semi-empirical cross sections as well as water as a surrogate for biological matter. In the current work, we report on the up-to-date version of our homemade Monte Carlo code TILDA-V – devoted to the modeling of the slowing-down of 10 keV–100 MeV protons in both water and DNA – where the main collisional processes are described by means of an extensive set of ab initio differential and total cross sections.

Research Organization:
Sandia National Lab. (SNL-NM), Albuquerque, NM (United States)
Sponsoring Organization:
USDOE National Nuclear Security Administration (NNSA)
Grant/Contract Number:
AC04-94AL85000
OSTI ID:
1369447
Report Number(s):
SAND2016-11437J; 649062
Journal Information:
European Physical Journal. D, Atomic, Molecular, Optical and Plasma Physics, Vol. 71, Issue 5; ISSN 1434-6060
Publisher:
SpringerCopyright Statement
Country of Publication:
United States
Language:
English
Citation Metrics:
Cited by: 15 works
Citation information provided by
Web of Science

References (63)

Quantum-mechanical predictions of DNA and RNA ionization by energetic proton beams journal March 2012
Proton stopping power in a group of bioorganic compounds over the energy range of 0.05–10MeV
  • Tan, Zhenyu; Xia, Yueyuan; Zhao, Mingwen
  • Nuclear Instruments and Methods in Physics Research Section B: Beam Interactions with Materials and Atoms, Vol. 248, Issue 1 https://doi.org/10.1016/j.nimb.2006.04.073
journal July 2006
The continuum distorted wave eikonal initial state model for transfer ionization in H + , He 2+ + He collisions journal March 2002
Low-Energy Electron Penetration Range in Liquid Water journal November 2002
Stopping cross sections of liquid water for MeV energy protons journal August 2009
Continuum distorted wave approximation; resonant charge transfer by fast protons in atomic hydrogen journal July 1964
Measurement of inelastic cross sections for low-energy electron scattering from DNA bases journal May 2011
Proton-impact ionization cross sections of adenine measured at 0.5 and 2.0 MeV by electron spectroscopy journal November 2011
A Monte Carlo track structure code for low energy protons journal August 2002
Simulation of DNA Damage after Proton Irradiation journal March 2003
Water-molecule dissociation by proton and hydrogen impact journal April 2007
A new calculation formula of the nuclear cross-section of therapeutic protons journal April 2014
Energy Loss of Hydrogen- and Helium-Ion Beams in DNA: Calculations Based on a Realistic Energy-Loss Function of the Target journal February 2011
Electron Energy-Loss Distributions in Solid, Dry DNA journal February 1995
Low-energy electron-energy-loss spectroscopy of amorphous ice: Electronic excitations journal November 1991
Buoyant densities and hydration of nucleic acids, proteins and nucleoprotein complexes in metrizamide journal December 1973
A study on the collision of hydrogen ions H 1 + , H 2 + and H 3 + with a water-vapour target journal September 1970
Ionization ranges of protons in water vapour in the energy range 1–100 keV journal December 2006
Proton stopping cross sections of liquid water journal July 1985
Energy loss, range, path length, time-of-flight, straggling, multiple scattering, and nuclear interaction probability journal March 1982
The Energy Loss of Low Energy Protons in Some Gases journal May 1953
CDW-EIS model for single-electron capture in ion–atom collisions involving multielectronic targets journal January 2004
Calculations of electronic stopping cross sections for low-energy protons in water journal July 2000
Proton track structure code in biological matter journal January 2015
A Monte Carlo Code for the Simulation of Heavy-Ion Tracks in Water journal February 2005
Theoretical ionization and capture cross sections for DNA nucleobases impacted by light ions journal October 2011
Electron capture in high-energy ion-atom collisions journal December 1979
Measurement of High-Energy Charge-Transfer Cross Sections for Incident Protons and Atomic Hydrogen in Various Gases journal July 1968
Development of a Monte Carlo track structure code for low-energy protons in water journal January 2001
Angular and energy dependence of cross sections for ejection of electrons from water vapor. II. 15 150-keV proton impact journal February 1986
Quantum-Chemical Investigation of the Structures and Electronic Spectra of the Nucleic Acid Bases at the Coupled Cluster CC2 Level journal June 2007
Theoretical cross sections for electron collisions in water: structure of electron tracks journal July 2003
Angular and Energy Distributions of Electrons Produced in Arbitrary Biomaterials by Proton Impact journal January 2015
Electron capture and ionization in atomic collisions
  • Martínez, Alejandra E.; Deco, Gustavo R.; Rivarola, Roberto D.
  • Nuclear Instruments and Methods in Physics Research Section B: Beam Interactions with Materials and Atoms, Vol. 43, Issue 1 https://doi.org/10.1016/0168-583X(89)90074-8
journal August 1989
A Calculation Method of Nuclear Cross-Sections of Proton Beams by the Collective Model and the Extended Nuclear-Shell Theory with Applications to Radiotherapy and Technical Problems journal August 2012
One‐Center Basis Set SCF MO's. III. H 2 O, H 2 S, and HCl journal April 1964
Monte Carlo simulation of the energy loss of low-energy electrons in liquid water journal July 2003
Stopping cross section of water vapor for hydrogen ions journal March 1990
Theoretical calculations of the stopping power for protons traversing H, He and simple molecular targets
  • Fainstein, P. D.; Olivera, G. H.; Rivarola, R. D.
  • Nuclear Instruments and Methods in Physics Research Section B: Beam Interactions with Materials and Atoms, Vol. 107, Issue 1-4 https://doi.org/10.1016/0168-583X(95)00810-1
journal February 1996
Electron and positron elastic scattering in gaseous and liquid water: A comparative study journal February 2008
Ionization of helium targets by proton impact: a four-body distorted wave-eikonal initial state model and electron dynamic correlation journal September 2009
Electron deposition in water vapor, with atmospheric applications journal September 1972
Angular and energy dependence of cross sections for ejection of electrons from water vapor. III. 20 150-keV neutral-hydrogen impact journal February 1986
Absolute doubly differential cross sections for ionization of adenine by 1.0-MeV protons journal September 2011
Theoretical Calculation of Electronic Stopping Power of Water Vapor by Proton Impact journal November 1995
Proton Energy Degradation in Water Vapor journal June 1973
Nuclear collision processes around the Bragg peak in proton therapy journal December 2009
Electronic states of some simple ethers studied by vacuum ultraviolet absorption and near-threshold electron energy-loss spectroscopy journal January 1991
Energy loss measurement of protons in liquid water journal March 2011
Cross sections for ionization of water vapor by 7 4000-keV protons journal January 1985
Absolute electronic excitation cross sections for low-energy electron (5–12eV) scattering from condensed thymine journal June 2005
Total, Partial, and Electron-Capture Cross Sections for Ionization of Water Vapor by 20–150 keV Protons journal April 2001
Electron nuclear dynamics of proton collisions with DNA/RNA bases at ELab=80keV: A contribution to proton cancer therapy research journal May 2014
Water versus DNA: new insights into proton track-structure modelling in radiobiology and radiotherapy journal September 2015
Absolute total and partial cross sections for ionization of nucleobases by proton impact in the Bragg peak velocity range journal August 2010
The Stopping Cross Section of Gases for Protons, 30-600 kev journal November 1953
Inelastic-collision cross sections of liquid water for interactions of energetic protons journal September 2000
H 2 O double ionization induced by electron impact journal February 2015
Electron-loss and target ionization cross sections for water vapor by 20–150keV neutral atomic hydrogen impact journal April 2006
Nuclear interactions in proton therapy: dose and relative biological effect distributions originating from primary and secondary particles journal February 2002
Energetic beams of negative and neutral hydrogen from intense laser plasma interaction journal December 2013
Track-structure codes in radiation research journal October 2006
Quantum-Mechanical Contributions to Numerical Simulations of Charged Particle Transport at the DNA Scale book November 2011

Cited By (4)

Proton transport modeling in a realistic biological environment by using TILDA-V journal October 2019
Fragment and cluster ions from gaseous and condensed pyridine produced under electron impact journal January 2018
Neutral hydrogen versus proton-induced ionization in water vapor journal October 2019
Many particle spectroscopy of atoms, molecules, clusters and surfaces: international conference MPS-2016 journal July 2017

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