High quality draft genome sequence and analysis of Pontibacter roseus type strain SRC-1T (DSM 17521T) isolated from muddy waters of a drainage system in Chandigarh, India
Abstract
Pontibacter roseus is a member of genus Pontibacter family Cytophagaceae, class Cytophagia. While the type species of the genus Pontibacter actiniarum was isolated in 2005 from a marine environment, subsequent species of the same genus have been found in different types of habitats ranging from seawater, sediment, desert soil, rhizosphere, contaminated sites, solar saltern and muddy water. Here we describe the features of Pontibacter roseus strain SRC-1T along with its complete genome sequence and annotation from a culture of DSM 17521T. In conclusion, the 4,581,480 bp long draft genome consists of 12 scaffolds with 4,003 protein-coding and 50 RNA genes and is a part of Genomic Encyclopedia of Type Strains: KMG-I project.
- Authors:
-
- DOE Joint Genome Institute, Walnut Creek, CA (United States)
- St. Petersburg State Univ., St. Petersburg (Russia); St. Petersburg Academic Univ., St. Petersburg (Russia)
- Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
- Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures, Braunschweig (Germany)
- DOE Joint Genome Institute, Walnut Creek, CA (United States); King Abdulaziz Univ., Jeddah (Saudi Arabia)
- Publication Date:
- Research Org.:
- Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)
- Sponsoring Org.:
- USDOE Office of Science (SC)
- OSTI Identifier:
- 1256480
- Grant/Contract Number:
- AC02-05CH11231
- Resource Type:
- Accepted Manuscript
- Journal Name:
- Standards in Genomic Sciences
- Additional Journal Information:
- Journal Volume: 10; Journal Issue: 1; Journal ID: ISSN 1944-3277
- Publisher:
- BioMed Central
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 59 BASIC BIOLOGICAL SCIENCES; aerobic; gram-negative; non-motile; obligate aerobe; halotolerant; menaquinone; GEBA; KMG-I
Citation Formats
Mukherjee, Supratim, Lapidus, Alla, Shapiro, Nicole, Cheng, Jan -Fang, Han, James, Reddy, T. B. K., Huntemann, Marcel, Ivanova, Natalia, Mikhailova, Natalia, Chen, Amy, Palaniappan, Krishna, Spring, Stefan, Goker, Markus, Markowitz, Victor, Woyke, Tanja, Tindall, Brian J., Klenk, Hans -Peter, Kyrpides, Nikos C., and Pati, Amrita. High quality draft genome sequence and analysis of Pontibacter roseus type strain SRC-1T (DSM 17521T) isolated from muddy waters of a drainage system in Chandigarh, India. United States: N. p., 2015.
Web. doi:10.1186/1944-3277-10-8.
Mukherjee, Supratim, Lapidus, Alla, Shapiro, Nicole, Cheng, Jan -Fang, Han, James, Reddy, T. B. K., Huntemann, Marcel, Ivanova, Natalia, Mikhailova, Natalia, Chen, Amy, Palaniappan, Krishna, Spring, Stefan, Goker, Markus, Markowitz, Victor, Woyke, Tanja, Tindall, Brian J., Klenk, Hans -Peter, Kyrpides, Nikos C., & Pati, Amrita. High quality draft genome sequence and analysis of Pontibacter roseus type strain SRC-1T (DSM 17521T) isolated from muddy waters of a drainage system in Chandigarh, India. United States. https://doi.org/10.1186/1944-3277-10-8
Mukherjee, Supratim, Lapidus, Alla, Shapiro, Nicole, Cheng, Jan -Fang, Han, James, Reddy, T. B. K., Huntemann, Marcel, Ivanova, Natalia, Mikhailova, Natalia, Chen, Amy, Palaniappan, Krishna, Spring, Stefan, Goker, Markus, Markowitz, Victor, Woyke, Tanja, Tindall, Brian J., Klenk, Hans -Peter, Kyrpides, Nikos C., and Pati, Amrita. Mon .
"High quality draft genome sequence and analysis of Pontibacter roseus type strain SRC-1T (DSM 17521T) isolated from muddy waters of a drainage system in Chandigarh, India". United States. https://doi.org/10.1186/1944-3277-10-8. https://www.osti.gov/servlets/purl/1256480.
@article{osti_1256480,
title = {High quality draft genome sequence and analysis of Pontibacter roseus type strain SRC-1T (DSM 17521T) isolated from muddy waters of a drainage system in Chandigarh, India},
author = {Mukherjee, Supratim and Lapidus, Alla and Shapiro, Nicole and Cheng, Jan -Fang and Han, James and Reddy, T. B. K. and Huntemann, Marcel and Ivanova, Natalia and Mikhailova, Natalia and Chen, Amy and Palaniappan, Krishna and Spring, Stefan and Goker, Markus and Markowitz, Victor and Woyke, Tanja and Tindall, Brian J. and Klenk, Hans -Peter and Kyrpides, Nikos C. and Pati, Amrita},
abstractNote = {Pontibacter roseus is a member of genus Pontibacter family Cytophagaceae, class Cytophagia. While the type species of the genus Pontibacter actiniarum was isolated in 2005 from a marine environment, subsequent species of the same genus have been found in different types of habitats ranging from seawater, sediment, desert soil, rhizosphere, contaminated sites, solar saltern and muddy water. Here we describe the features of Pontibacter roseus strain SRC-1T along with its complete genome sequence and annotation from a culture of DSM 17521T. In conclusion, the 4,581,480 bp long draft genome consists of 12 scaffolds with 4,003 protein-coding and 50 RNA genes and is a part of Genomic Encyclopedia of Type Strains: KMG-I project.},
doi = {10.1186/1944-3277-10-8},
journal = {Standards in Genomic Sciences},
number = 1,
volume = 10,
place = {United States},
year = {Mon Feb 09 00:00:00 EST 2015},
month = {Mon Feb 09 00:00:00 EST 2015}
}
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Works referencing / citing this record:
Pontibacter oryzae sp. nov., a carotenoid-producing species isolated from a rice paddy field
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