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Title: High quality draft genome sequence of Corynebacterium ulceribovis type strain IMMIB-L1395T (DSM 45146T)

Abstract

We report that the Corynebacterium ulceribovis strain IMMIB L-1395T (= DSM 45146T) is an aerobic to facultative anaerobic, Gram-positive, non-spore-forming, non-motile rod-shaped bacterium that was isolated from the skin of the udder of a cow, in Schleswig Holstein, Germany. The cell wall of C. ulceribovis contains corynemycolic acids. The cellular fatty acids are those described for the genus Corynebacterium, but tuberculostearic acid is not present. Here we describe the features of C. ulceribovis strain IMMIB L-1395T, together with genome sequence information and its annotation. The 2,300,451 bp long genome containing 2,104 protein-coding genes and 54 RNA-encoding genes and is part of the Genomic Encyclopedia of Type Strains, Phase I: the one thousand microbial genomes (KMG) project.

Authors:
 [1];  [2];  [3];  [3];  [3];  [3];  [3];  [4];  [3];  [5];  [6]
  1. Institute for Medical Microbiology, Immunology and Hygiene, Bonn (Germany)
  2. St. Petersburg State Univ. (Russia); St. Petersburg Academic Univ. (Russia)
  3. Department of Energy Joint Genome Institute, Walnut Creek, CA (United States)
  4. Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
  5. Leibniz Inst. DSMZ, Braunschweig (Germany)
  6. Department of Energy Joint Genome Institute, Walnut Creek, CA (United States); King Abdulaziz Univ., Jeddah (Saudi Arabia)
Publication Date:
Research Org.:
Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
Sponsoring Org.:
USDOE Office of Science (SC), Biological and Environmental Research (BER) (SC-23)
OSTI Identifier:
1256929
Grant/Contract Number:  
AC02- 05CH11231
Resource Type:
Accepted Manuscript
Journal Name:
Standards in Genomic Sciences
Additional Journal Information:
Journal Volume: 10; Journal Issue: 1; Journal ID: ISSN 1944-3277
Publisher:
BioMed Central
Country of Publication:
United States
Language:
English
Subject:
59 BASIC BIOLOGICAL SCIENCES; Gram-positive; Bovine skin; Corynebacteriaceae; Actinobacteria; GEBA

Citation Formats

Yassin, Atteyet F., Lapidus, Alla, Han, James, Reddy, T. B. K., Huntemann, Marcel, Pati, Amrita, Ivanova, Natalia, Markowitz, Victor, Woyke, Tanja, Klenk, Hans-Peter, and Kyrpides, Nikos C. High quality draft genome sequence of Corynebacterium ulceribovis type strain IMMIB-L1395T (DSM 45146T). United States: N. p., 2015. Web. doi:10.1186/s40793-015-0036-7.
Yassin, Atteyet F., Lapidus, Alla, Han, James, Reddy, T. B. K., Huntemann, Marcel, Pati, Amrita, Ivanova, Natalia, Markowitz, Victor, Woyke, Tanja, Klenk, Hans-Peter, & Kyrpides, Nikos C. High quality draft genome sequence of Corynebacterium ulceribovis type strain IMMIB-L1395T (DSM 45146T). United States. doi:10.1186/s40793-015-0036-7.
Yassin, Atteyet F., Lapidus, Alla, Han, James, Reddy, T. B. K., Huntemann, Marcel, Pati, Amrita, Ivanova, Natalia, Markowitz, Victor, Woyke, Tanja, Klenk, Hans-Peter, and Kyrpides, Nikos C. Wed . "High quality draft genome sequence of Corynebacterium ulceribovis type strain IMMIB-L1395T (DSM 45146T)". United States. doi:10.1186/s40793-015-0036-7. https://www.osti.gov/servlets/purl/1256929.
@article{osti_1256929,
title = {High quality draft genome sequence of Corynebacterium ulceribovis type strain IMMIB-L1395T (DSM 45146T)},
author = {Yassin, Atteyet F. and Lapidus, Alla and Han, James and Reddy, T. B. K. and Huntemann, Marcel and Pati, Amrita and Ivanova, Natalia and Markowitz, Victor and Woyke, Tanja and Klenk, Hans-Peter and Kyrpides, Nikos C.},
abstractNote = {We report that the Corynebacterium ulceribovis strain IMMIB L-1395T (= DSM 45146T) is an aerobic to facultative anaerobic, Gram-positive, non-spore-forming, non-motile rod-shaped bacterium that was isolated from the skin of the udder of a cow, in Schleswig Holstein, Germany. The cell wall of C. ulceribovis contains corynemycolic acids. The cellular fatty acids are those described for the genus Corynebacterium, but tuberculostearic acid is not present. Here we describe the features of C. ulceribovis strain IMMIB L-1395T, together with genome sequence information and its annotation. The 2,300,451 bp long genome containing 2,104 protein-coding genes and 54 RNA-encoding genes and is part of the Genomic Encyclopedia of Type Strains, Phase I: the one thousand microbial genomes (KMG) project.},
doi = {10.1186/s40793-015-0036-7},
journal = {Standards in Genomic Sciences},
number = 1,
volume = 10,
place = {United States},
year = {2015},
month = {8}
}

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Works referenced in this record:

Confidence Limits on Phylogenies: An Approach Using the Bootstrap
journal, July 1985

  • Felsenstein, Joseph
  • Evolution, Vol. 39, Issue 4, p. 783-791
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