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Title: High quality draft genome sequence and analysis of Pontibacter roseus type strain SRC-1T (DSM 17521T) isolated from muddy waters of a drainage system in Chandigarh, India

Abstract

Pontibacter roseus Suresh et al 2006 is a member of genus Pontibacter family Cytophagaceae, class Cytophagia. While the type species of the genus Pontibacter actiniarum was isolated in 2005 from a marine environment, subsequent species of the same genus have been found in different types of habitats ranging from seawater, sediment, desert soil, rhizosphere, contaminated sites, solar saltern and muddy water. Here we describe the features of Pontibacter roseus strain SRC-1T along with its complete genome sequence and annotation from a culture of DSM 17521T. The 4,581,480 bp long draft genome consists of 12 scaffolds with 4,003 protein-coding and 50 RNA genes and is a part of Genomic encyclopedia of Type Strains, Phase I: the one thousand microbial genomes (KMG-I) project.

Authors:
; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ;
Publication Date:
Research Org.:
Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
Sponsoring Org.:
Genomics Division
OSTI Identifier:
1241213
Report Number(s):
LBNL-7041E
Journal ID: ISSN 1944-3277
DOE Contract Number:  
DE-AC02-05CH11231
Resource Type:
Journal Article
Resource Relation:
Journal Name: Standards in Genomic Sciences; Journal Volume: 10; Journal Issue: 1
Country of Publication:
United States
Language:
English
Subject:
59 BASIC BIOLOGICAL SCIENCES; Aerobic; Gram-negative; non-motile; obligate aerobe; halotolerant; menaquinone; GEBA; KMG-I

Citation Formats

Mukherjee, Supratim, Lapidus, Alla, Shapiro, Nicole, Cheng, Jan-Fang, Han, James, Reddy, TBK, Huntemann, Marcel, Ivanova, Natalia, Mikhailova, Natalia, Chen, Amy, Palaniappan, Krishna, Spring, Stefan, Göker, Markus, Markowitz, Victor, Woyke, Tanja, Tindall, Brian J., Klenk, Hans-Peter, Kyrpides, Nikos C., and Pati, Amrita. High quality draft genome sequence and analysis of Pontibacter roseus type strain SRC-1T (DSM 17521T) isolated from muddy waters of a drainage system in Chandigarh, India. United States: N. p., 2015. Web. doi:10.1186/1944-3277-10-8.
Mukherjee, Supratim, Lapidus, Alla, Shapiro, Nicole, Cheng, Jan-Fang, Han, James, Reddy, TBK, Huntemann, Marcel, Ivanova, Natalia, Mikhailova, Natalia, Chen, Amy, Palaniappan, Krishna, Spring, Stefan, Göker, Markus, Markowitz, Victor, Woyke, Tanja, Tindall, Brian J., Klenk, Hans-Peter, Kyrpides, Nikos C., & Pati, Amrita. High quality draft genome sequence and analysis of Pontibacter roseus type strain SRC-1T (DSM 17521T) isolated from muddy waters of a drainage system in Chandigarh, India. United States. doi:10.1186/1944-3277-10-8.
Mukherjee, Supratim, Lapidus, Alla, Shapiro, Nicole, Cheng, Jan-Fang, Han, James, Reddy, TBK, Huntemann, Marcel, Ivanova, Natalia, Mikhailova, Natalia, Chen, Amy, Palaniappan, Krishna, Spring, Stefan, Göker, Markus, Markowitz, Victor, Woyke, Tanja, Tindall, Brian J., Klenk, Hans-Peter, Kyrpides, Nikos C., and Pati, Amrita. Thu . "High quality draft genome sequence and analysis of Pontibacter roseus type strain SRC-1T (DSM 17521T) isolated from muddy waters of a drainage system in Chandigarh, India". United States. doi:10.1186/1944-3277-10-8. https://www.osti.gov/servlets/purl/1241213.
@article{osti_1241213,
title = {High quality draft genome sequence and analysis of Pontibacter roseus type strain SRC-1T (DSM 17521T) isolated from muddy waters of a drainage system in Chandigarh, India},
author = {Mukherjee, Supratim and Lapidus, Alla and Shapiro, Nicole and Cheng, Jan-Fang and Han, James and Reddy, TBK and Huntemann, Marcel and Ivanova, Natalia and Mikhailova, Natalia and Chen, Amy and Palaniappan, Krishna and Spring, Stefan and Göker, Markus and Markowitz, Victor and Woyke, Tanja and Tindall, Brian J. and Klenk, Hans-Peter and Kyrpides, Nikos C. and Pati, Amrita},
abstractNote = {Pontibacter roseus Suresh et al 2006 is a member of genus Pontibacter family Cytophagaceae, class Cytophagia. While the type species of the genus Pontibacter actiniarum was isolated in 2005 from a marine environment, subsequent species of the same genus have been found in different types of habitats ranging from seawater, sediment, desert soil, rhizosphere, contaminated sites, solar saltern and muddy water. Here we describe the features of Pontibacter roseus strain SRC-1T along with its complete genome sequence and annotation from a culture of DSM 17521T. The 4,581,480 bp long draft genome consists of 12 scaffolds with 4,003 protein-coding and 50 RNA genes and is a part of Genomic encyclopedia of Type Strains, Phase I: the one thousand microbial genomes (KMG-I) project.},
doi = {10.1186/1944-3277-10-8},
journal = {Standards in Genomic Sciences},
number = 1,
volume = 10,
place = {United States},
year = {Thu Jan 01 00:00:00 EST 2015},
month = {Thu Jan 01 00:00:00 EST 2015}
}