High quality draft genome sequence of the slightly halophilic bacterium Halomonas zhanjiangensis type strain JSM 078169T (DSM 21076T) from a sea urchin in southern China
Abstract
Halomonas zhanjiangensis Chen et al. 2009 is a member of the genus Halomonas, family Halomonadaceae, class Gammaproteobacteria. Representatives of the genus Halomonas are a group of halophilic bacteria often isolated from salty environments. The type strain H. zhanjiangensis JSM 078169T was isolated from a sea urchin (Hemicentrotus pulcherrimus) collected from the South China Sea. The genome of strain JSM 078169T is the fourteenth sequenced genome in the genus Halomonas and the fifteenth in the family Halomonadaceae. The other thirteen genomes from the genus Halomonas are H. halocynthiae, H. venusta, H. alkaliphila, H. lutea, H. anticariensis, H. jeotgali, H. titanicae, H. desiderata, H. smyrnensis, H. salifodinae, H. boliviensis, H. elongata and H stevensii. Here, we describe the features of strain JSM 078169T , together with the complete genome sequence and annotation from a culture of DSM 21076T . The 4,060,520 bp long draft genome consists of 17 scaffolds with the 3,659 protein-coding and 80 RNA genes and is a part of Genomic Encyclopedia of Type Strains, Phase I: the one thousand microbial genomes (KMG) project.
- Authors:
-
- Yannan Univ., Kunming (China). Yannan Inst. of Microbiology. Ministry of Education and the Lab. for Conservation and Utilization of Bio-Resources. Key Lab. of Microbial Diversity in Southwest China; Zhejiang Academy of Agricultural Sciences (China). Inst. of Quality and Standard for Agro-products. State Key Lab. Breeding Base for Zhejiang Sustainable Plant Pest Control
- Zhejiang Academy of Agricultural Sciences (China). Inst. of Quality and Standard for Agro-products. State Key Lab. Breeding Base for Zhejiang Sustainable Plant Pest Control
- Chinese Academy of Sciences (CAS), Urumqi (China). Xinjiang Inst. of Ecology and Geography. Key Lab. of Biogeography and Bioresource in Arid Land; Chinese Academy of Sciences (CAS), Beijing (China)
- St. Petersburg State Univ. (Russia). Theodosius Dobzhansky Center for Genome Bioinformatics; St. Petersburg Academic Univ.. (Russia). Algorithmic Biology Lab.
- USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States)
- Helmholtz Centre for Infection Research, Braunschweig (Germany). HZI
- Leibniz Inst. DSMZ, Braunschweig (Germany). German Collection of Microorganisms and Cell Cultures
- Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States). Biological Data Management and Technology Center
- USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States); King Abdulaziz Univ., Jeddah (Saudi Arabia). Dept. of Biological Sciences
- Yannan Univ., Kunming (China). Yannan Inst. of Microbiology. Ministry of Education and the Lab. for Conservation and Utilization of Bio-Resources. Key Lab. of Microbial Diversity in Southwest China; Chinese Academy of Sciences (CAS), Urumqi (China). Xinjiang Inst. of Ecology and Geography. Key Lab. of Biogeography and Bioresource in Arid Land
- Publication Date:
- Research Org.:
- Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States); Lawrence Livermore National Laboratory (LLNL), Livermore, CA (United States)
- Sponsoring Org.:
- USDOE Office of Science (SC), Biological and Environmental Research (BER). Biological Systems Science Division
- OSTI Identifier:
- 1628694
- Grant/Contract Number:
- AC02-05CH11231; AC52-07NA27344
- Resource Type:
- Accepted Manuscript
- Journal Name:
- Standards in Genomic Sciences
- Additional Journal Information:
- Journal Volume: 9; Journal Issue: 3; Journal ID: ISSN 1944-3277
- Publisher:
- BioMed Central
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 59 BASIC BIOLOGICAL SCIENCES; Genetics & Heredity; Microbiology; strictly aerobic; motile Gram-negative; chemoorganotrophic; slightly halophilic; Halomonadaceae
Citation Formats
Zhou, Yu, Li, Rui, Gao, Xiao-Yang, Lapidus, Alla, Han, James, Haynes, Matthew, Lobos, Elizabeth, Huntemann, Marcel, Pati, Amrita, Ivanova, Natalia N., Rohde, Manfred, Mavromatis, Konstantinos, Tindall, Brian J., Markowitz, Victor, Woyke, Tanja, Klenk, Hans-Peter, Kyrpides, Nikos C., and Li, Wen-Jun. High quality draft genome sequence of the slightly halophilic bacterium Halomonas zhanjiangensis type strain JSM 078169T (DSM 21076T) from a sea urchin in southern China. United States: N. p., 2014.
Web. doi:10.4056/sigs.5449586.
Zhou, Yu, Li, Rui, Gao, Xiao-Yang, Lapidus, Alla, Han, James, Haynes, Matthew, Lobos, Elizabeth, Huntemann, Marcel, Pati, Amrita, Ivanova, Natalia N., Rohde, Manfred, Mavromatis, Konstantinos, Tindall, Brian J., Markowitz, Victor, Woyke, Tanja, Klenk, Hans-Peter, Kyrpides, Nikos C., & Li, Wen-Jun. High quality draft genome sequence of the slightly halophilic bacterium Halomonas zhanjiangensis type strain JSM 078169T (DSM 21076T) from a sea urchin in southern China. United States. https://doi.org/10.4056/sigs.5449586
Zhou, Yu, Li, Rui, Gao, Xiao-Yang, Lapidus, Alla, Han, James, Haynes, Matthew, Lobos, Elizabeth, Huntemann, Marcel, Pati, Amrita, Ivanova, Natalia N., Rohde, Manfred, Mavromatis, Konstantinos, Tindall, Brian J., Markowitz, Victor, Woyke, Tanja, Klenk, Hans-Peter, Kyrpides, Nikos C., and Li, Wen-Jun. Fri .
"High quality draft genome sequence of the slightly halophilic bacterium Halomonas zhanjiangensis type strain JSM 078169T (DSM 21076T) from a sea urchin in southern China". United States. https://doi.org/10.4056/sigs.5449586. https://www.osti.gov/servlets/purl/1628694.
@article{osti_1628694,
title = {High quality draft genome sequence of the slightly halophilic bacterium Halomonas zhanjiangensis type strain JSM 078169T (DSM 21076T) from a sea urchin in southern China},
author = {Zhou, Yu and Li, Rui and Gao, Xiao-Yang and Lapidus, Alla and Han, James and Haynes, Matthew and Lobos, Elizabeth and Huntemann, Marcel and Pati, Amrita and Ivanova, Natalia N. and Rohde, Manfred and Mavromatis, Konstantinos and Tindall, Brian J. and Markowitz, Victor and Woyke, Tanja and Klenk, Hans-Peter and Kyrpides, Nikos C. and Li, Wen-Jun},
abstractNote = {Halomonas zhanjiangensis Chen et al. 2009 is a member of the genus Halomonas, family Halomonadaceae, class Gammaproteobacteria. Representatives of the genus Halomonas are a group of halophilic bacteria often isolated from salty environments. The type strain H. zhanjiangensis JSM 078169T was isolated from a sea urchin (Hemicentrotus pulcherrimus) collected from the South China Sea. The genome of strain JSM 078169T is the fourteenth sequenced genome in the genus Halomonas and the fifteenth in the family Halomonadaceae. The other thirteen genomes from the genus Halomonas are H. halocynthiae, H. venusta, H. alkaliphila, H. lutea, H. anticariensis, H. jeotgali, H. titanicae, H. desiderata, H. smyrnensis, H. salifodinae, H. boliviensis, H. elongata and H stevensii. Here, we describe the features of strain JSM 078169T , together with the complete genome sequence and annotation from a culture of DSM 21076T . The 4,060,520 bp long draft genome consists of 17 scaffolds with the 3,659 protein-coding and 80 RNA genes and is a part of Genomic Encyclopedia of Type Strains, Phase I: the one thousand microbial genomes (KMG) project.},
doi = {10.4056/sigs.5449586},
journal = {Standards in Genomic Sciences},
number = 3,
volume = 9,
place = {United States},
year = {Fri Apr 11 00:00:00 EDT 2014},
month = {Fri Apr 11 00:00:00 EDT 2014}
}
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