L-arabinose fermenting yeast
Abstract
An L-arabinose utilizing yeast strain is provided for the production of ethanol by introducing and expressing bacterial araA, araB and araD genes. L-arabinose transporters are also introduced into the yeast to enhance the uptake of arabinose. The yeast carries additional genomic mutations enabling it to consume L-arabinose, even as the only carbon source, and to produce ethanol. A yeast strain engineered to metabolize arabinose through a novel pathway is also disclosed. Methods of producing ethanol include utilizing these modified yeast strains.
- Inventors:
- Issue Date:
- Research Org.:
- National Renewable Energy Laboratory (NREL), Golden, CO (United States)
- Sponsoring Org.:
- USDOE
- OSTI Identifier:
- 1083198
- Patent Number(s):
- 8372626
- Application Number:
- 12/909,523
- Assignee:
- Alliance for Sustainable Energy, LLC (Golden, CO)
- Patent Classifications (CPCs):
-
C - CHEMISTRY C12 - BIOCHEMISTRY C12N - MICROORGANISMS OR ENZYMES
C - CHEMISTRY C12 - BIOCHEMISTRY C12P - FERMENTATION OR ENZYME-USING PROCESSES TO SYNTHESISE A DESIRED CHEMICAL COMPOUND OR COMPOSITION OR TO SEPARATE OPTICAL ISOMERS FROM A RACEMIC MIXTURE {
- DOE Contract Number:
- AC36-99GO10337
- Resource Type:
- Patent
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 59 BASIC BIOLOGICAL SCIENCES
Citation Formats
Zhang, Min, Singh, Arjun, Suominen, Pirkko, Knoshaug, Eric, Franden, Mary Ann, and Jarvis, Eric. L-arabinose fermenting yeast. United States: N. p., 2013.
Web.
Zhang, Min, Singh, Arjun, Suominen, Pirkko, Knoshaug, Eric, Franden, Mary Ann, & Jarvis, Eric. L-arabinose fermenting yeast. United States.
Zhang, Min, Singh, Arjun, Suominen, Pirkko, Knoshaug, Eric, Franden, Mary Ann, and Jarvis, Eric. Tue .
"L-arabinose fermenting yeast". United States. https://www.osti.gov/servlets/purl/1083198.
@article{osti_1083198,
title = {L-arabinose fermenting yeast},
author = {Zhang, Min and Singh, Arjun and Suominen, Pirkko and Knoshaug, Eric and Franden, Mary Ann and Jarvis, Eric},
abstractNote = {An L-arabinose utilizing yeast strain is provided for the production of ethanol by introducing and expressing bacterial araA, araB and araD genes. L-arabinose transporters are also introduced into the yeast to enhance the uptake of arabinose. The yeast carries additional genomic mutations enabling it to consume L-arabinose, even as the only carbon source, and to produce ethanol. A yeast strain engineered to metabolize arabinose through a novel pathway is also disclosed. Methods of producing ethanol include utilizing these modified yeast strains.},
doi = {},
journal = {},
number = ,
volume = ,
place = {United States},
year = {Tue Feb 12 00:00:00 EST 2013},
month = {Tue Feb 12 00:00:00 EST 2013}
}
Works referenced in this record:
Method for the modification of the expression characteristics of an endogenous gene of a given cell line
patent, December 1993
- Chappel, Scott C.
- US Patent Document 5,272,071
Method of DNA reassembly by interrupting synthesis
patent, October 1999
- Short, Jay M.
- US Patent Document 5,965,408
Engineering fungi for the utilisation of l-arabinose
patent-application, October 2003
- Londesborough, John; Penttil, Merja; Peter, Richard
- US Patent Application 10/257821; 20030186402
Modified yeast consuming L-arabinose
patent-application, June 2005
- Boles, Eckhard; Becker, Jessica
- US Patent Application 10/983951; 20050142648
Methods and cells for expression of recombinant protein products under the transcriptional control of an inducible promoter
patent-application, November 2005
- Better, Marc D.
- US Patent Application 10/963414; 20050260705
L-Arabinose Fermenting Yeast
patent-application, June 2010
- Zhang, Min; Singh, Arjun; Suominen, Pirkko
- US Patent Application 11/912493; 20100144041
Basic local alignment search tool
journal, October 1990
- Altschul, Stephen F.; Gish, Warren; Miller, Webb
- Journal of Molecular Biology, Vol. 215, Issue 3, p. 403-410
Cloning and characterization of the gene encoding a high-affinity maltose transporter from
journal, January 2004
- Alvesaraujo, C.; Hernandezlopez, M.; Sousa, M.
- FEMS Yeast Research, Vol. 4, Issue 4-5
The Missing Link in the Fungal l -Arabinose Catabolic Pathway, Identification of the l -Xylulose Reductase Gene † , ‡
journal, May 2002
- Richard, Peter; Putkonen, Mikko; Väänänen, Ritva
- Biochemistry, Vol. 41, Issue 20
A Modified Saccharomyces cerevisiae Strain That Consumes L-Arabinose and Produces Ethanol
journal, July 2003
- Becker, J.; Boles, E.
- Applied and Environmental Microbiology, Vol. 69, Issue 7
Glucose uptake in Kluyveromyces lactis: role of the HGT1 gene in glucose transport.
journal, October 1996
- Billard, P.; Ménart, S.; Blaisonneau, J.
- Journal of Bacteriology, Vol. 178, Issue 20
Deciphering the message in protein sequences: tolerance to amino acid substitutions
journal, March 1990
- Bowie, J.; Reidhaar-Olson, J.; Lim, W.
- Science, Vol. 247, Issue 4948, p. 1306-1310
A new dominant hybrid selective marker for higher eukaryotic cells
journal, July 1981
- Colbére-Garapin, Florence; Horodniceanu, Florian; Kourilsky, Philippe
- Journal of Molecular Biology, Vol. 150, Issue 1, p. 1-14
ULBPs, Novel MHC Class I–Related Molecules, Bind to CMV Glycoprotein UL16 and Stimulate NK Cytotoxicity through the NKG2D Receptor
journal, February 2001
- Cosman, David; Müllberg, Jürgen; Sutherland, Claire L.
- Immunity, Vol. 14, Issue 2, p. 123-133
DNA shuffling of a family of genes from diverse species accelerates directed evolution
journal, January 1998
- Crameri, Andreas; Raillard, Sun-Ai; Bermudez, Ericka
- Nature, Vol. 391, Issue 6664
Characterization of the putative maltose transporters encoded by YDL247w and YJR160c
journal, January 2002
- Day, Rachel E.; Higgins, Vincent J.; Rogers, Peter J.
- Yeast, Vol. 19, Issue 12
Genome evolution in yeasts
journal, July 2004
- Dujon, Bernard; Sherman, David; Fischer, Gilles
- Nature, Vol. 430, Issue 6995
Computational protein engineering
journal, July 1998
- Hellinga, H. W.
- Nature Structural Biology, Vol. 5, Issue 7
DMSO-enhanced whole cell yeast transformation
journal, January 1991
- Hill, James; Donald, K. A. Ian G.; Griffiths, David E.
- Nucleic Acids Research, Vol. 19, Issue 20
Extraction and Characterization of Hemicellulose from the Corn Fiber Produced by Corn Wet-Milling Processes
journal, July 1998
- Hespell, Robert B.
- Journal of Agricultural and Food Chemistry, Vol. 46, Issue 7
Genetics of somatic mammalian cells, VII. Induction and isolation of nutritional mutants in Chinese hamster cells.
journal, August 1968
- Kao, F. T.; Puck, T. T.
- Proceedings of the National Academy of Sciences, Vol. 60, Issue 4
Isolation and characterization of the Pichia stipitis xylitol dehydrogenase gene, XYL2, and construction of a xylose-utilizing Saccharomyces cerevisiae transformant
journal, January 1990
- K�tter, Peter; Amore, Ren�; Hollenberg, Cornelis P.
- Current Genetics, Vol. 18, Issue 6
The hexose transporter family of Saccharomyces cerevisiae
journal, November 1996
- Kruckeberg, Arthur L.
- Archives of Microbiology, Vol. 166, Issue 5
The leucine zipper: a hypothetical structure common to a new class of DNA binding proteins
journal, June 1988
- Landschulz, Wh; Johnson, Pf; McKnight, Sl
- Science, Vol. 240, Issue 4860
When blind is better: Protein design by evolution
journal, July 1998
- Arnold, Frances H.
- Nature Biotechnology, Vol. 16, Issue 7
Selection for animal cells that express the Escherichia coli gene coding for xanthine-guanine phosphoribosyltransferase.
journal, April 1981
- Mulligan, R. C.; Berg, P.
- Proceedings of the National Academy of Sciences, Vol. 78, Issue 4
Arabinose utilization by xylose-fermenting yeasts and fungi
journal, March 1994
- McMillan, James D.; Boynton, Brian L.
- Applied Biochemistry and Biotechnology, Vol. 45-46, Issue 1
Transformation of mouse fibroblasts to methotrexate resistance by a recombinant plasmid expressing a prokaryotic dihydrofolate reductase.
journal, March 1981
- O'Hare, K.; Benoist, C.; Breathnach, R.
- Proceedings of the National Academy of Sciences, Vol. 78, Issue 3
Ffz1, a new transporter specific for fructose from Zygosaccharomyces bailii
journal, July 2004
- Pina, C.
- Microbiology, Vol. 150, Issue 7
The neighbor-joining method: a new method for reconstructing phylogenetic trees.
journal, July 1987
- Saitou, N.; Nei, M.
- Molecular Biology and Evolution, Vol. 4, Issue 4, p. 406-425
Expression of prokaryotic genes for hygromycin B and G418 resistance as dominant-selection markers in mouse L cells
journal, October 1984
- Santerre, Robert F.; Allen, Norris E.; Hobbs, Joe N.
- Gene, Vol. 30, Issue 1-3, p. 147-156
Expression of E. coli araBAD operon encoding enzymes for metabolizing L-arabinose in Saccharomyces cerevisiae
journal, January 2001
- Sedlak, Miroslav; Ho, Nancy W. Y.
- Enzyme and Microbial Technology, Vol. 28, Issue 1
Toward controlling gene expression at will: Selection and design of zinc finger domains recognizing each of the 5'-GNN-3' DNA target sequences
journal, March 1999
- Segal, D. J.; Dreier, B.; Beerli, R. R.
- Proceedings of the National Academy of Sciences, Vol. 96, Issue 6
Effect of surface modification using various acids on electrodeposition of lithium
journal, June 1995
- Shiraishi, S.; Kanamura, K.; Takehara, Z.
- Journal of Applied Electrochemistry, Vol. 25, Issue 6
D-Xylose Transport by Candida succiphila and Kluyveromyces marxianus
journal, January 2003
- Stambuk, Boris U.; Franden, Mary Ann; Singh, Arjun
- Applied Biochemistry and Biotechnology, Vol. 106, Issue 1-3
Engineering an enzyme to resist boiling
journal, March 1998
- Van den Burg, B.; Vriend, G.; Veltman, O. R.
- Proceedings of the National Academy of Sciences, Vol. 95, Issue 5
Furfural, 5-hydroxymethyl furfural, and acetoin act as external electron acceptors during anaerobic fermentation of xylose in recombinant Saccharomyces cerevisiae : External Electron Acceptors in Xylose Using
journal, February 2002
- Wahlbom, C. Fredrik; Hahn-Hägerdal, Bärbel
- Biotechnology and Bioengineering, Vol. 78, Issue 2
Comparison of biosequences
journal, December 1981
- Smith, Temple F.; Waterman, Michael S.
- Advances in Applied Mathematics, Vol. 2, Issue 4, p. 482-489
Cloning and characterization of three genes (SUT1-3 ) encoding glucose transporters of the yeast Pichia stipitis
journal, February 1999
- Weierstall, Thomas; Hollenberg, Cornelis P.; Boles, Eckhard
- Molecular Microbiology, Vol. 31, Issue 3
Transformation of mammalian cells with an amplifiable dominant-acting gene.
journal, June 1980
- Wigler, M.; Perucho, M.; Kurtz, D.
- Proceedings of the National Academy of Sciences, Vol. 77, Issue 6
Metabolic Engineering of a Pentose Metabolism Pathway in Ethanologenic Zymomonas mobilis
journal, January 1995
- Zhang, M.; Eddy, C.; Deanda, K.
- Science, Vol. 267, Issue 5195
Molecular evolution by staggered extension process (StEP) in vitro recombination
journal, March 1998
- Zhao, Huimin; Giver, Lori; Shao, Zhixin
- Nature Biotechnology, Vol. 16, Issue 3
Metabolic Engineering of Saccharomyces cerevisiae
journal, March 2000
- Ostergaard, S.; Olsson, L.; Nielsen, J.
- Microbiology and Molecular Biology Reviews, Vol. 64, Issue 1
Production of L -arabitol from L -arabinose by Candida entomaea and Pichia guilliermondii
journal, April 1996
- Saha, B. C.; Bothast, R. J.
- Applied Microbiology and Biotechnology, Vol. 45, Issue 3