WHONDRS Surface Water Dissolved Organic Carbon and FTICR-MS across Stream Orders in Four United States Watersheds in 2019 and 2020 (v3)

Torgeson, Joshua M.; Bambakidis, Ted; Bates, Tristan L.; Chu, Rosalie; Crump, Byron C.; Danczak, Robert E.; Forbes, Brieanne; Garayburu-Caruso, Vanessa A.; Goldman, Amy E.; Logozzo, Laura; Maavara, Taylor; Martin, Edward W.; McKever, Sophia A.; Powers-McCormack, Beck; Raymond, Peter A.; Renteria, Lupita; Toyoda, Jason G.; Stegen, James C.

doi:10.15485/1895159

Title: WHONDRS Surface Water Dissolved Organic Carbon and FTICR-MS across Stream Orders in Four United States Watersheds in 2019 and 2020 (v3)

Dataset
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Abstract

This dataset supports the broader Watershed Rules of Life (WROL) study examining spatial and temporal biogeochemical and microbial relationships across the Connecticut River, Deschutes River, Gunnison River, and Willamette River watersheds. The dataset provides geochemistry and organic matter characterization data generated from surface water collected from August 2019 to September 2020 in Colorado, Connecticut, Oregon, and Vermont. Related data were collected and will be published separately in collaboration with P. A. Raymond and B. C. Crump as part of WROL. This dataset is comprised of one folder containing (1) file-level metadata; (2) data dictionary; (3) readme; (4) field metadata; (5) dissolved organic carbon (DOC, measured as non-purgeable organic carbon, NPOC) data and averages; (6) surface water sampling protocol; (7) methods codes; (8) international generic sample number (IGSN) mapping file; and (9) a folder of high resolution characterization of organic matter via 12 Tesla Fourier transform ion cyclotron resonance mass spectrometry (FTICR-MS) generated through the Environmental Molecular Sciences Laboratory (EMSL; https://www.pnnl.gov/environmental-molecular-sciences-laboratory). The FTICR folder contains two subfolders, one containing the .xml data files and the other containing instructions for using Formularity (https://omics.pnl.gov/software/formularity) and an R script to process the data based on the user's specific needs. All files are .csv, .pdf,more »« less

Authors:

;

; Bates, Tristan L.;

;

; Martin, Edward W.; McKever, Sophia A.;

;

Pacific Northwest National Laboratory; Pacific Northwest National Laboratory
Oregon State University
Colorado Mesa University
Pacific Northwest National Laboratory
Yale University
University of Leeds

Publication Date:: Fri Dec 31 23:00:00 EST 2021

Research Org.:: Environmental System Science Data Infrastructure for a Virtual Ecosystem; River Corridor and Watershed Biogeochemistry SFA

Sponsoring Org.:: U.S. DOE > Office of Science > Biological and Environmental Research (BER)

Subject:: 54 ENVIRONMENTAL SCIENCES; Biogeochemistry; DOC; Dissolved organic carbon; EARTH SCIENCE > TERRESTRIAL HYDROSPHERE > SURFACE WATER; ESS-DIVE CSV File Formatting Guidelines Reporting Format; ESS-DIVE File Level Metadata Reporting Format; ESS-DIVE Sample ID and Metadata Reporting Format; ESS-DIVE Water-Soil-Sediment Chemistry Reporting Format; FTICR-MS; Freshwater; Hydrobiogeochemical function; Mass spectrometry; Metabolite; Metabolomics; NPOC; Non-purgeable organic carbon; Organic matter; River; River corridor; Stream; Stream order; Watershed

OSTI Identifier:: 1895159

DOI:: https://doi.org/10.15485/1895159

Citation Formats


                    Torgeson, Joshua M., Bambakidis, Ted, Bates, Tristan L., Chu, Rosalie, Crump, Byron C., Danczak, Robert E., Forbes, Brieanne, Garayburu-Caruso, Vanessa A., Goldman, Amy E., Logozzo, Laura, Maavara, Taylor, Martin, Edward W., McKever, Sophia A., Powers-McCormack, Beck, Raymond, Peter A., Renteria, Lupita, Toyoda, Jason G., and Stegen, James C. WHONDRS Surface Water Dissolved Organic Carbon and FTICR-MS across Stream Orders in Four United States Watersheds in 2019 and 2020 (v3).  United States: N. p., 2021. 
        Web.  doi:10.15485/1895159.

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                    Torgeson, Joshua M., Bambakidis, Ted, Bates, Tristan L., Chu, Rosalie, Crump, Byron C., Danczak, Robert E., Forbes, Brieanne, Garayburu-Caruso, Vanessa A., Goldman, Amy E., Logozzo, Laura, Maavara, Taylor, Martin, Edward W., McKever, Sophia A., Powers-McCormack, Beck, Raymond, Peter A., Renteria, Lupita, Toyoda, Jason G., & Stegen, James C. WHONDRS Surface Water Dissolved Organic Carbon and FTICR-MS across Stream Orders in Four United States Watersheds in 2019 and 2020 (v3).  United States.  doi:https://doi.org/10.15485/1895159

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                    Torgeson, Joshua M., Bambakidis, Ted, Bates, Tristan L., Chu, Rosalie, Crump, Byron C., Danczak, Robert E., Forbes, Brieanne, Garayburu-Caruso, Vanessa A., Goldman, Amy E., Logozzo, Laura, Maavara, Taylor, Martin, Edward W., McKever, Sophia A., Powers-McCormack, Beck, Raymond, Peter A., Renteria, Lupita, Toyoda, Jason G., and Stegen, James C. 2021.  
"WHONDRS Surface Water Dissolved Organic Carbon and FTICR-MS across Stream Orders in Four United States Watersheds in 2019 and 2020 (v3)".  United States.  doi:https://doi.org/10.15485/1895159.  https://www.osti.gov/servlets/purl/1895159. Pub date:Fri Dec 31 23:00:00 EST 2021

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@article{osti_1895159,

  title        = {WHONDRS Surface Water Dissolved Organic Carbon and FTICR-MS across Stream Orders in Four United States Watersheds in 2019 and 2020 (v3)},

  author       = {Torgeson, Joshua M. and Bambakidis, Ted and Bates, Tristan L. and Chu, Rosalie and Crump, Byron C. and Danczak, Robert E. and Forbes, Brieanne and Garayburu-Caruso, Vanessa A. and Goldman, Amy E. and Logozzo, Laura and Maavara, Taylor and Martin, Edward W. and McKever, Sophia A. and Powers-McCormack, Beck and Raymond, Peter A. and Renteria, Lupita and Toyoda, Jason G. and Stegen, James C.},

  abstractNote = {This dataset supports the broader Watershed Rules of Life (WROL) study examining spatial and temporal biogeochemical and microbial relationships across the Connecticut River, Deschutes River, Gunnison River, and Willamette River watersheds. The dataset provides geochemistry and organic matter characterization data generated from surface water collected from August 2019 to September 2020 in Colorado, Connecticut, Oregon, and Vermont. Related data were collected and will be published separately in collaboration with P. A. Raymond and B. C. Crump as part of WROL. This dataset is comprised of one folder containing (1) file-level metadata; (2) data dictionary; (3) readme; (4) field metadata; (5) dissolved organic carbon (DOC, measured as non-purgeable organic carbon, NPOC) data and averages; (6) surface water sampling protocol; (7) methods codes; (8) international generic sample number (IGSN) mapping file; and (9) a folder of high resolution characterization of organic matter via 12 Tesla Fourier transform ion cyclotron resonance mass spectrometry (FTICR-MS) generated through the Environmental Molecular Sciences Laboratory (EMSL; https://www.pnnl.gov/environmental-molecular-sciences-laboratory). The FTICR folder contains two subfolders, one containing the .xml data files and the other containing instructions for using Formularity (https://omics.pnl.gov/software/formularity) and an R script to process the data based on the user's specific needs. All files are .csv, .pdf, .R, .ref, or .xml. This data package was originally published in October 2022. It was updated in July 2023 (v2) and again in November 2023 (v3). See the change history section in the readme for more details.},

  doi          = {10.15485/1895159},

  journal      = {},

  number       = ,

  volume       = ,

  place        = {United States},

  year         = {Fri Dec 31 23:00:00 EST 2021},

  month        = {Fri Dec 31 23:00:00 EST 2021}

}

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DOI: https://doi.org/10.15485/1895159

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