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Title: WHONDRS Summer 2019 Sampling Campaign: Global River Corridor Surface Water FTICR-MS, NPOC, TN, Anions, Stable Isotopes, Bacterial Abundance, and Dissolved Inorganic Carbon (v6)

Abstract

The WHONDRS Summer 2019 Sampling (S19S) Campaign collected samples in 97 globally distributed river corridor systems between July and September 2019. Surficial streambed sediments were collected at three locations within each site (upstream, midstream, and downstream). Surface water was collected at the downstream site. This dataset includes a portion of the data types produced from the surface water samples and does not include any results from the sediment. Sediment data can be found at https://data.ess-dive.lbl.gov/view/doi:10.15485/1729719. Future datasets from this study will include hydrologic and microbial data from the surface water and sediment. The S19S campaign was designed with the science community to ask questions associated with links among core/transient metabolomes, microbial metabolism, biogeochemical function, and physical properties of watershed and river corridor systems. This dataset contains (1) high resolution characterization of dissolved organic matter from surface water via 12 Tesla Fourier transform ion cyclotron resonance mass spectrometry (FTICR-MS) through the Environmental Molecular Sciences Laboratory (EMSL; https://www.pnnl.gov/environmental-molecular-sciences-laboratory); (2) non-purgeable organic carbon (NPOC); (3) stable water isotopes (O and H); (4) specific conductivity (SpC), total nitrogen (TN), and anions; (5) flow cytometry bacterial abundance data; (6) dissolved inorganic carbon (DIC) data; (7) metadata, including international generic-sample number (IGSN) mapping file; (8) file-levelmore » metadata (flmd); and (9) data dictionary (dd). The FTICR-MS files are .xml, and the data package includes instructions for using Formularity (https://omics.pnl.gov/software/formularity) and an R script to process the data based on the user’s specific needs. All other files are .csv, .pdf, or .txt. This data package was updated in July 2021 to add SpC, TN, and anion data and accompanying documentation. This data package was updated in January 2023 to add flow cytometry bacterial data, accompanying documentation, flmd, and dd. The data package was updated in February 2023 to add DIC data and accompanying documentation. The data package was updated in August 2023 to add IGSN mapping file, correct field metadata, and update accompanying documentation. See change history in readme for details.Please use the data package’s DOI to cite the data package. We ask that you email us at WHONDRS@pnnl.gov to let us know that you are using the data and acknowledge WHONDRS and the U.S. Department of Energy's Environmental System Science program—which generously provides funding to WHONDRS—in your publications, proposals, presentations, etc. All data are free to be used for any purpose, such as for manuscripts, presentations, and grant proposals. There is no obligation to include WHONDRS members as co-authors.« less

Authors:
ORCiD logo ; ORCiD logo ; ORCiD logo ; ORCiD logo ; ORCiD logo ; ORCiD logo ; ORCiD logo ; ORCiD logo ; ORCiD logo ; ORCiD logo ; ORCiD logo ; ORCiD logo ; ORCiD logo ; ORCiD logo ; ORCiD logo ; ORCiD logo ; ORCiD logo ; ORCiD logo ; ORCiD logo ; ORCiD logo more »; ORCiD logo ; « less
+ Show Author Affiliations
  1. Pacific Northwest National Laboratory
  2. Ben Gurion University of the Negev
  3. Colorado State University
  4. University of Arizona/Pacific Northwest National Laboratory
Publication Date:
Research Org.:
Environmental System Science Data Infrastructure for a Virtual Ecosystem (ESS-DIVE) (United States); River Corridor and Watershed Biogeochemistry SFA
Sponsoring Org.:
U.S. DOE > Office of Science > Biological and Environmental Research (BER)
Subject:
54 ENVIRONMENTAL SCIENCES
Keywords:
WHONDRS; Watershed; River corridor; Hydrology; Biogeochemistry; Hyporheic zone; Hydrologic exchange; River; Stream; Carbon; FTICR; Metabolite; Metabolomics; Mass spectrometry; Catchment; Microbiome; Isotope geochemistry; Freshwater; Organic matter; Flow cytometry; ESS-DIVE CSV File Formatting Guidelines Reporting Format; ESS-DIVE File Level Metadata Reporting Format; ESS-DIVE Sample ID and Metadata Reporting Format; EARTH SCIENCE > TERRESTRIAL HYDROSPHERE > SURFACE WATER; FTICR-MS; Deuterium; 18-O; NPOC; Total nitrogen; Specific conductance; Chloride; Sulfate; Nitrate; Nitrite; Fluoride; Anions; Bacterial abundance; Dissolved inorganic carbon; DIC; EARTH SCIENCE > TERRESTRIAL HYDROSPHERE > WATER QUALITY/WATER CHEMISTRY > ISOTOPES > STABLE ISOTOPES
Geolocation:
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OSTI Identifier:
1603775
DOI:
https://doi.org/10.15485/1603775
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Citation Formats

Toyoda, Jason G, Goldman, Amy E, Arnon, Shai, Bar-Zeev, Edo, Chu, Rosalie K, Danczak, Robert E, Daly, Rebecca A, Forbes, Brieanne, Garayburu-Caruso, Vanessa A, Graham, Emily B, Lin, Xinming, Moran, James J, Ren, Huiying, Renteria, Lupita, Resch, Charles T, Tfaily, Malak, Tolic, Nikola, Torgeson, Joshua M, Wells, Jacqueline, Wrighton, Kelly C, Stegen, James C, and WHONDRS Consortium, The. WHONDRS Summer 2019 Sampling Campaign: Global River Corridor Surface Water FTICR-MS, NPOC, TN, Anions, Stable Isotopes, Bacterial Abundance, and Dissolved Inorganic Carbon (v6). United States: N. p., 2020. Web. doi:10.15485/1603775.
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Toyoda, Jason G, Goldman, Amy E, Arnon, Shai, Bar-Zeev, Edo, Chu, Rosalie K, Danczak, Robert E, Daly, Rebecca A, Forbes, Brieanne, Garayburu-Caruso, Vanessa A, Graham, Emily B, Lin, Xinming, Moran, James J, Ren, Huiying, Renteria, Lupita, Resch, Charles T, Tfaily, Malak, Tolic, Nikola, Torgeson, Joshua M, Wells, Jacqueline, Wrighton, Kelly C, Stegen, James C, & WHONDRS Consortium, The. WHONDRS Summer 2019 Sampling Campaign: Global River Corridor Surface Water FTICR-MS, NPOC, TN, Anions, Stable Isotopes, Bacterial Abundance, and Dissolved Inorganic Carbon (v6). United States. doi:https://doi.org/10.15485/1603775
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Toyoda, Jason G, Goldman, Amy E, Arnon, Shai, Bar-Zeev, Edo, Chu, Rosalie K, Danczak, Robert E, Daly, Rebecca A, Forbes, Brieanne, Garayburu-Caruso, Vanessa A, Graham, Emily B, Lin, Xinming, Moran, James J, Ren, Huiying, Renteria, Lupita, Resch, Charles T, Tfaily, Malak, Tolic, Nikola, Torgeson, Joshua M, Wells, Jacqueline, Wrighton, Kelly C, Stegen, James C, and WHONDRS Consortium, The. 2020. "WHONDRS Summer 2019 Sampling Campaign: Global River Corridor Surface Water FTICR-MS, NPOC, TN, Anions, Stable Isotopes, Bacterial Abundance, and Dissolved Inorganic Carbon (v6)". United States. doi:https://doi.org/10.15485/1603775. https://www.osti.gov/servlets/purl/1603775. Pub date:Wed Jan 01 00:00:00 EST 2020
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@article{osti_1603775,
title = {WHONDRS Summer 2019 Sampling Campaign: Global River Corridor Surface Water FTICR-MS, NPOC, TN, Anions, Stable Isotopes, Bacterial Abundance, and Dissolved Inorganic Carbon (v6)},
author = {Toyoda, Jason G and Goldman, Amy E and Arnon, Shai and Bar-Zeev, Edo and Chu, Rosalie K and Danczak, Robert E and Daly, Rebecca A and Forbes, Brieanne and Garayburu-Caruso, Vanessa A and Graham, Emily B and Lin, Xinming and Moran, James J and Ren, Huiying and Renteria, Lupita and Resch, Charles T and Tfaily, Malak and Tolic, Nikola and Torgeson, Joshua M and Wells, Jacqueline and Wrighton, Kelly C and Stegen, James C and WHONDRS Consortium, The},
abstractNote = {The WHONDRS Summer 2019 Sampling (S19S) Campaign collected samples in 97 globally distributed river corridor systems between July and September 2019. Surficial streambed sediments were collected at three locations within each site (upstream, midstream, and downstream). Surface water was collected at the downstream site. This dataset includes a portion of the data types produced from the surface water samples and does not include any results from the sediment. Sediment data can be found at https://data.ess-dive.lbl.gov/view/doi:10.15485/1729719. Future datasets from this study will include hydrologic and microbial data from the surface water and sediment. The S19S campaign was designed with the science community to ask questions associated with links among core/transient metabolomes, microbial metabolism, biogeochemical function, and physical properties of watershed and river corridor systems. This dataset contains (1) high resolution characterization of dissolved organic matter from surface water via 12 Tesla Fourier transform ion cyclotron resonance mass spectrometry (FTICR-MS) through the Environmental Molecular Sciences Laboratory (EMSL; https://www.pnnl.gov/environmental-molecular-sciences-laboratory); (2) non-purgeable organic carbon (NPOC); (3) stable water isotopes (O and H); (4) specific conductivity (SpC), total nitrogen (TN), and anions; (5) flow cytometry bacterial abundance data; (6) dissolved inorganic carbon (DIC) data; (7) metadata, including international generic-sample number (IGSN) mapping file; (8) file-level metadata (flmd); and (9) data dictionary (dd). The FTICR-MS files are .xml, and the data package includes instructions for using Formularity (https://omics.pnl.gov/software/formularity) and an R script to process the data based on the user’s specific needs. All other files are .csv, .pdf, or .txt. This data package was updated in July 2021 to add SpC, TN, and anion data and accompanying documentation. This data package was updated in January 2023 to add flow cytometry bacterial data, accompanying documentation, flmd, and dd. The data package was updated in February 2023 to add DIC data and accompanying documentation. The data package was updated in August 2023 to add IGSN mapping file, correct field metadata, and update accompanying documentation. See change history in readme for details.Please use the data package’s DOI to cite the data package. We ask that you email us at WHONDRS@pnnl.gov to let us know that you are using the data and acknowledge WHONDRS and the U.S. Department of Energy's Environmental System Science program—which generously provides funding to WHONDRS—in your publications, proposals, presentations, etc. All data are free to be used for any purpose, such as for manuscripts, presentations, and grant proposals. There is no obligation to include WHONDRS members as co-authors.},
doi = {10.15485/1603775},
journal = {},
number = ,
volume = ,
place = {United States},
year = {Wed Jan 01 00:00:00 EST 2020},
month = {Wed Jan 01 00:00:00 EST 2020}
}
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DOI: https://doi.org/10.15485/1603775
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