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Title: WHONDRS Summer 2019 Sampling Campaign: Global River Corridor Sediment FTICR-MS, NPOC, and Aerobic Respiration

Abstract

The WHONDRS Summer 2019 Sampling (S19S) Campaign collected samples in 97 globally distributed river corridor systems between July and September 2019. Surficial streambed sediments were collected at three locations within each site (upstream, midstream, and downstream). Surface water was collected at the downstream site. This dataset includes a portion of the data types produced from the sediment samples and does not include any results from the surface water. S19S surface water data can be found at https://data.ess-dive.lbl.gov/view/doi:10.15485/1603775. Future datasets from this study will include geochemical, hydrologic, and microbial data from the surface water and sediment. The S19S campaign was designed with the science community to ask questions associated with links among core/transient metabolomes, microbial metabolism, biogeochemical function, and physical properties of watershed and river corridor systems. This dataset contains (1) high resolution characterization of dissolved organic matter from sediment via 12 Tesla Fourier transform ion cyclotron resonance mass spectrometry (FTICR-MS) through the Environmental Molecular Sciences Laboratory (EMSL; https://www.pnnl.gov/environmental-molecular-sciences-laboratory); (2) non-purgeable organic carbon (NPOC); (3) respiration rates calculated from laboratory incubations; (4) site photos; and (5) metadata. The field metadata file (WHONDRS_S19S_metadata_v3.csv) is the same as the field metadata included in the S19S surface water data package but has had streammore » order added and is listed as version 3. The FTICR-MS files are .xml, and the data package includes instructions for using Formularity (https://omics.pnl.gov/software/formularity) and an R script to process the data based on the user's specific needs. All other data files are .csv.Please use the data package's DOI to cite the data package. We ask that you email us at WHONDRS@pnnl.gov to let us know that you are using the data and acknowledge WHONDRS and the U.S. Department of Energy's Subsurface Biogeochemical Research program - which generously provides funding to WHONDRS - in your publications, proposals, presentations, etc. All data are free to be used for any purpose, such as for manuscripts, presentations, and grant proposals. There is no obligation to include WHONDRS members as co-authors.« less

Authors:
ORCiD logo ; ; ORCiD logo ; ORCiD logo ; ORCiD logo ; ; ORCiD logo ; ; ORCiD logo ; ORCiD logo ; ORCiD logo ; ORCiD logo ; ORCiD logo ; ORCiD logo ; ; ORCiD logo ; ORCiD logo ; ORCiD logo ;
  1. Pacific Northwest National Laboratory
  2. Colorado State University
  3. University of Arizona/Pacific Northwest National Laboratory
  4. Oregon State University
Publication Date:
DOE Contract Number:  
DOE Award #54737
Research Org.:
Environmental System Science Data Infrastructure for a Virtual Ecosystem (ESS-DIVE) (United States); River Corridor and Watershed Biogeochemistry SFA Worldwide Hydrobiogeochemistry Observation Network for Dynamic River Systems (WHONDRS)
Sponsoring Org.:
U.S. DOE > Office of Science > Biological and Environmental Research (BER)
Subject:
54 ENVIRONMENTAL SCIENCES
Keywords:
WHONDRS; Watershed; River corridor; Hydrology; Biogeochemistry; Hyporheic zone; Hydrologic exchange; River; Stream; Carbon; FTICR; Metabolite; Metabolomics; Mass spectrometry; Catchment; Respiration; Freshwater; FTICR-MS; Aerobic respiration rate; NPOC; EARTH SCIENCE > TERRESTRIAL HYDROSPHERE > SURFACE WATER
Geolocation:
40.6647, (-105.224839.0944, (-77.981533.3783, (-97.783444.3001, (-120.858341.7207, (-111.886441.9504, (-111.580539.8596, (-75.784160.5209, (-144.837540.035, (-105.543939.2387, (-84.712446.3763, (-119.27350.6887, (-120.366537.0581, (-119.25625.4098, (-80.964231.1859, (-84.437340.7846, (-111.795518.2759, (-65.785333.3377, (-81.718231.8531, (-88.157548.1686, (-117.390443.1091, (-89.640342.9875, (-108.398237.2101, (-80.445138.875, (-76.546539.8907, (-105.911618.1741, (-66.799730.2503, (-97.709639.8579, (-75.783132.8994, (35.613732.3273, (-110.759546.6949, (-119.465739.1041, (-96.602868.6427, (-149.403534.9509, (-106.681444.2606, (-122.164346.3728, (-119.27239.0877, (-96.584839.3118, (-76.717540.013, (-105.458938.8944, (-78.147435.6918, (-83.504140.7801, (-111.805438.9468, (-96.443945.7922, (-121.929946.6794, (-119.462643.1232, (-116.774549.3864, (-121.450637.0523, (-119.195435.9573, (-84.278739.3397, (-123.75233.7508, (-111.508135.9662, (-84.357443.6482, (-115.988945.2477, (7.804339.3623, (-123.734842.5234, (-71.185538.9603, (-76.92633.9557, (-83.437732.9614, (-87.408342.7697, (-70.916934.4425, (-96.622635.1634, (128.964632.5411, (-87.798246.7322, (-117.180443.145, (-89.472168.6272, (-149.597240.3108, (-88.322743.9547, (-71.722837.2914, (-75.930835.1986, (-106.643131.6679, (-81.840364.8557, (-147.805650.7753, (-119.721635.868, (-106.523342.4718, (-72.331138.5448, (-106.950138.5096, (-122.883439.7585, (-102.449236.955, (-119.023841.8696, (-72.796842.1325, (-74.695540.6151, (-78.006936.9613, (-119.028342.3919, (-85.35418.1103, (-66.986546.253, (-119.477244.2073, (-122.257933.1308, (-79.810252.4198, (-1.704443.6367, (-123.571952.8007, (-2.304761.6754, (7.21238.9224, (-106.951449.8688, (-97.408452.4763, (13.625943.4314, (-123.585637.5728, (-77.024
OSTI Identifier:
1729719
DOI:
https://doi.org/10.15485/1729719
Project Location:
S19S_0077,Cache La Poudre,Fort Collins,Colorado,USA
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Project Location:
S19S_0014,Lewis Run,Berryville,Virginia,USA
DOE DataExplorer Dataset Location Google Map
Project Location:
S19S_0025,Pringle Creek,Alvord,Texas,USA
DOE DataExplorer Dataset Location Google Map
Project Location:
S19S_0041,Crooked River,Prineville,Oregon,USA
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Project Location:
S19S_0097,Logan,Logan,Utah,USA
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Project Location:
S19S_0098,Logan,Logan,Utah,USA
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Project Location:
S19S_0038,White Clay Creek,Avondale,Pennsylvania,USA
DOE DataExplorer Dataset Location Google Map
Project Location:
S19S_0091,Copper River,Cordova,Alaska,USA
DOE DataExplorer Dataset Location Google Map
Project Location:
S19S_0026,Como Creek,Nederland,Colorado,USA
DOE DataExplorer Dataset Location Google Map
Project Location:
S19S_0099,Great Miami,Cincinnati,Ohio,USA
DOE DataExplorer Dataset Location Google Map
Project Location:
S19S_0074,Columbia,Richland,Washington,USA
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Project Location:
S19S_0003,Thompson ,Kamloops,British Columbia,Canada
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Project Location:
S19S_0033,Big Creek ,Auberry,California ,USA
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Project Location:
S19S_0042,Shark River Slough,Flamingo,Florida,USA
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Project Location:
S19S_0015,Flint River,Newton,Georgia,USA
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Project Location:
S19S_0029,Red Butte Creek,Salt Lake City,Utah,USA
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Project Location:
S19S_0094,Icacos,Naguabo,Puerto Rico,USA
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Project Location:
S19S_0057,Tims Branch,Aiken,South Carolina,USA
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Project Location:
S19S_0020,Tombigbee River,Toxey AL,Alabama,USA
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Project Location:
S19S_0059,Heel Creek tributary,Deer Valley,Washington,USA
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Project Location:
S19S_0061,Black Earth Creek,Cross Plains,Wisconsin,USA
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Project Location:
S19S_0009,Little Wind River,Riverton,Wyoming,USA
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Project Location:
S19S_0089,Stroubles Creek,Blacksburg,Virginia,USA
DOE DataExplorer Dataset Location Google Map
Project Location:
S19S_0082,Muddy Creek,Edgewater,Maryland,USA
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Project Location:
S19S_0027,West St. Louis Creek,Fraser,Colorado,USA
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Project Location:
S19S_0049,Rio Guilarte,Adjuntas,Puerto Rico,USA
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Project Location:
S19S_0063,Lower Colorado ,Austin ,Texas,USA
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Project Location:
S19S_0037,White Clay Creek,Avondale,Pennsylvania,USA
DOE DataExplorer Dataset Location Google Map
Project Location:
S19S_0058,Jordan River,Gesher Arik,Not_Provided,Israel
DOE DataExplorer Dataset Location Google Map
Project Location:
S19S_0035,Marshall Gulch,Summerhaven,Arizona,USA
DOE DataExplorer Dataset Location Google Map
Project Location:
S19S_0075,Columbia,Richland,Washington,USA
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Project Location:
S19S_0016,King's Creek,Manhattan,Kansas,USA
DOE DataExplorer Dataset Location Google Map
Project Location:
S19S_0047,Kuparuk River,Toolik Field Station,Alaska,USA
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Project Location:
S19S_0080,Rio Grande,South Valley,New Mexico,USA
DOE DataExplorer Dataset Location Google Map
Project Location:
S19S_0031,McRae Creek,Blue River,Oregon,USA
DOE DataExplorer Dataset Location Google Map
Project Location:
S19S_0036,Columbia,Richland,Washington,USA
DOE DataExplorer Dataset Location Google Map
Project Location:
S19S_0040,Kings Creek (N04D),Manhattan,Kansas,USA
DOE DataExplorer Dataset Location Google Map
Project Location:
S19S_0006,Dead Run,Baltimore,Maryland,USA
DOE DataExplorer Dataset Location Google Map
Project Location:
S19S_0071,Gordon Creek,Nederland,Colorado,USA
DOE DataExplorer Dataset Location Google Map
Project Location:
S19S_0013,Posey Creek,Front Royal,Virginia,USA
DOE DataExplorer Dataset Location Google Map
Project Location:
S19S_0018,LeConte Creek,Gatlinburg,Tennessee,USA
DOE DataExplorer Dataset Location Google Map
Project Location:
S19S_0086,Red Butte Creek,Salt Lake City,Utah,USA
DOE DataExplorer Dataset Location Google Map
Project Location:
S19S_0017,McDiffett Creek,Manhattan,Kansas,USA
DOE DataExplorer Dataset Location Google Map
Project Location:
S19S_0030,Martha Creek,Stabler,Washington,USA
DOE DataExplorer Dataset Location Google Map
Project Location:
S19S_0076,Columbia,Richland,Washington,USA
DOE DataExplorer Dataset Location Google Map
Project Location:
S19S_0087,Dobson Creek,Boise,Idaho,USA
DOE DataExplorer Dataset Location Google Map
Project Location:
S19S_0001,Fraser,Hope,British Columbia,Canada
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Project Location:
S19S_0007,Providence Creek / KREW's P304 creek,Shaver Lake ,California,USA
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Project Location:
S19S_0019,Walker Branch,Oak Ridge,Tennessee,USA
DOE DataExplorer Dataset Location Google Map
Project Location:
S19S_0070,South Fork Caspar Creek ,Ft. Bragg,California,USA
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Project Location:
S19S_0028,Sycamore Creek,Mesa,Arizona,USA
DOE DataExplorer Dataset Location Google Map
Project Location:
S19S_0039,East Fork Poplar Creek,Oak Ridge,Tennessee,USA
DOE DataExplorer Dataset Location Google Map
Project Location:
S19S_0085,Mores Creek,Idaho City,Idaho,USA
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Project Location:
S19S_0096,Orco ,San Benigno Canavese,Not_Provided,Italy
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Project Location:
S19S_0069,North Fork Caspar Creek ,Ft. Bragg,California,USA
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Project Location:
S19S_0072,Sawmill Brook,Burlington,Massachusettes,USA
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Project Location:
S19S_0081,Northeast Branch of Anacostia,Riverdale,Maryland,USA
DOE DataExplorer Dataset Location Google Map
Project Location:
S19S_0011,Middle Oconee,Athens,Georgia,USA
DOE DataExplorer Dataset Location Google Map
Project Location:
S19S_0022,Mayfield Creek,Moundville,Alabama,USA
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Project Location:
S19S_0073,Cart Creek,Newbury,Massachusettes,USA
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Project Location:
S19S_0024,Blue River,Connerville,Oklahoma,USA
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Project Location:
S19S_0056,Nakdong,Busan,Not_Provided,South Korea
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Project Location:
S19S_0021,Black Warrior,Demopolis,Alabama,USA
DOE DataExplorer Dataset Location Google Map
Project Location:
S19S_0055,South Fork Polouse,Pullman,Washington,USA
DOE DataExplorer Dataset Location Google Map
Project Location:
S19S_0043,Dorn Creek,Middleton,Wisconsin,USA
DOE DataExplorer Dataset Location Google Map
Project Location:
S19S_0050,Oksrukuyik Creek,North Slope Borough,Alaska,USA
DOE DataExplorer Dataset Location Google Map
Project Location:
S19S_0083,Sangamon,Fisher,Illinois,USA
DOE DataExplorer Dataset Location Google Map
Project Location:
S19S_0084,Watershed 3 stream,North Woodstock,New Hampshire,USA
DOE DataExplorer Dataset Location Google Map
Project Location:
S19S_0090,Cobb Mill Creek,Oyster,Virginia,USA
DOE DataExplorer Dataset Location Google Map
Project Location:
S19S_0066,Rio Grande,Albuquerque,New Mexico,USA
DOE DataExplorer Dataset Location Google Map
Project Location:
S19S_0010,Altamaha,Doctortown,Georgia,USA
DOE DataExplorer Dataset Location Google Map
Project Location:
S19S_0051,Caribou Creek,Fairbanks,Alaska,USA
DOE DataExplorer Dataset Location Google Map
Project Location:
S19S_0004,South Thompson,Chase,British Columbia,Canada
DOE DataExplorer Dataset Location Google Map
Project Location:
S19S_0034,La Jara,Los Alamos,New Mexico,USA
DOE DataExplorer Dataset Location Google Map
Project Location:
S19S_0012,Hop Brook,New Salem,Massachusetts,USA
DOE DataExplorer Dataset Location Google Map
Project Location:
S19S_0062,Gunnison River,Gunnison,Colorado,USA
DOE DataExplorer Dataset Location Google Map
Project Location:
S19S_0065,Russian River,Guerneville,California,USA
DOE DataExplorer Dataset Location Google Map
Project Location:
S19S_0023,Arikaree River,Idalia,Colorado,USA
DOE DataExplorer Dataset Location Google Map
Project Location:
S19S_0032,Teakettle 2 Creek,Sierra National Forest ,California,USA
DOE DataExplorer Dataset Location Google Map
Project Location:
S19S_0053,Farmington,Simsbury,Connecticut,USA
DOE DataExplorer Dataset Location Google Map
Project Location:
S19S_0052,Platte Kill,Dunraven,New York,USA
DOE DataExplorer Dataset Location Google Map
Project Location:
S19S_0064,Shavers Creek,Petersburg,Pennsylvania,USA
DOE DataExplorer Dataset Location Google Map
Project Location:
S19S_0008,Teakettle T003 stream,Shaver Lake,California,USA
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Project Location:
S19S_0067,Augusta Creek,Hickory Corners,Michigan,USA
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Project Location:
S19S_0048,Rio Cupeyes,Sabana Grande ,Puerto Rico,USA
DOE DataExplorer Dataset Location Google Map
Project Location:
S19S_0060,Yakima River,Benton City,Washington,USA
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Project Location:
S19S_0068,Watershed 01 stream,Blue River,Oregon,USA
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Project Location:
S19S_0044,Huger Creek,Cordesville,South Carolina,USA
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Project Location:
S19S_0092,Blythe,Birmingham,Not_Provided,UK
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Project Location:
S19S_0079,Umpqua,Elkton,Oregon,USA
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Project Location:
S19S_0093,Wood Brook,Stafford,Not_Provided,UK
DOE DataExplorer Dataset Location Google Map
Project Location:
S19S_0046,Nigardsbreen River,Nigardsbreen,Not_Provided,Norway
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Project Location:
S19S_0100,East River,Crested Butte,Colorado,USA
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Project Location:
S19S_0005,Assiniboine,Winnipeg,Manitoba,Canada
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Project Location:
S19S_0045,Erpe River sidechannel,Berlin-Heidemühle,Brandenburg,Germany
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Project Location:
S19S_0078,Little Wolf Creek,Tyee,Oregon,USA
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Project Location:
S19S_0054,Pamunkey River,New Kent,Virginia,USA
DOE DataExplorer Dataset Location Google Map

Citation Formats

Goldman, Amy E, Chu, Rosalie K, Danczak, Robert E, Daly, Rebecca A, Fansler, Sarah, Garayburu-Caruso, Vanessa A, Graham, Emily B, McCall, Marcy L, Ren, Huiying, Renteria, Lupita, Resch, Charles T, Tfaily, Malak, Tolic, Nikola, Torgeson, Joshua M, Toyoda, Jason G, Wells, Jacqueline, Wrighton, Kelly C, Stegen, James C, and WHONDRS Consortium, The. WHONDRS Summer 2019 Sampling Campaign: Global River Corridor Sediment FTICR-MS, NPOC, and Aerobic Respiration. United States: N. p., 2020. Web. doi:10.15485/1729719.
Goldman, Amy E, Chu, Rosalie K, Danczak, Robert E, Daly, Rebecca A, Fansler, Sarah, Garayburu-Caruso, Vanessa A, Graham, Emily B, McCall, Marcy L, Ren, Huiying, Renteria, Lupita, Resch, Charles T, Tfaily, Malak, Tolic, Nikola, Torgeson, Joshua M, Toyoda, Jason G, Wells, Jacqueline, Wrighton, Kelly C, Stegen, James C, & WHONDRS Consortium, The. WHONDRS Summer 2019 Sampling Campaign: Global River Corridor Sediment FTICR-MS, NPOC, and Aerobic Respiration. United States. doi:https://doi.org/10.15485/1729719
Goldman, Amy E, Chu, Rosalie K, Danczak, Robert E, Daly, Rebecca A, Fansler, Sarah, Garayburu-Caruso, Vanessa A, Graham, Emily B, McCall, Marcy L, Ren, Huiying, Renteria, Lupita, Resch, Charles T, Tfaily, Malak, Tolic, Nikola, Torgeson, Joshua M, Toyoda, Jason G, Wells, Jacqueline, Wrighton, Kelly C, Stegen, James C, and WHONDRS Consortium, The. 2020. "WHONDRS Summer 2019 Sampling Campaign: Global River Corridor Sediment FTICR-MS, NPOC, and Aerobic Respiration". United States. doi:https://doi.org/10.15485/1729719. https://www.osti.gov/servlets/purl/1729719. Pub date:Wed Jan 01 00:00:00 EST 2020
@article{osti_1729719,
title = {WHONDRS Summer 2019 Sampling Campaign: Global River Corridor Sediment FTICR-MS, NPOC, and Aerobic Respiration},
author = {Goldman, Amy E and Chu, Rosalie K and Danczak, Robert E and Daly, Rebecca A and Fansler, Sarah and Garayburu-Caruso, Vanessa A and Graham, Emily B and McCall, Marcy L and Ren, Huiying and Renteria, Lupita and Resch, Charles T and Tfaily, Malak and Tolic, Nikola and Torgeson, Joshua M and Toyoda, Jason G and Wells, Jacqueline and Wrighton, Kelly C and Stegen, James C and WHONDRS Consortium, The},
abstractNote = {The WHONDRS Summer 2019 Sampling (S19S) Campaign collected samples in 97 globally distributed river corridor systems between July and September 2019. Surficial streambed sediments were collected at three locations within each site (upstream, midstream, and downstream). Surface water was collected at the downstream site. This dataset includes a portion of the data types produced from the sediment samples and does not include any results from the surface water. S19S surface water data can be found at https://data.ess-dive.lbl.gov/view/doi:10.15485/1603775. Future datasets from this study will include geochemical, hydrologic, and microbial data from the surface water and sediment. The S19S campaign was designed with the science community to ask questions associated with links among core/transient metabolomes, microbial metabolism, biogeochemical function, and physical properties of watershed and river corridor systems. This dataset contains (1) high resolution characterization of dissolved organic matter from sediment via 12 Tesla Fourier transform ion cyclotron resonance mass spectrometry (FTICR-MS) through the Environmental Molecular Sciences Laboratory (EMSL; https://www.pnnl.gov/environmental-molecular-sciences-laboratory); (2) non-purgeable organic carbon (NPOC); (3) respiration rates calculated from laboratory incubations; (4) site photos; and (5) metadata. The field metadata file (WHONDRS_S19S_metadata_v3.csv) is the same as the field metadata included in the S19S surface water data package but has had stream order added and is listed as version 3. The FTICR-MS files are .xml, and the data package includes instructions for using Formularity (https://omics.pnl.gov/software/formularity) and an R script to process the data based on the user's specific needs. All other data files are .csv.Please use the data package's DOI to cite the data package. We ask that you email us at WHONDRS@pnnl.gov to let us know that you are using the data and acknowledge WHONDRS and the U.S. Department of Energy's Subsurface Biogeochemical Research program - which generously provides funding to WHONDRS - in your publications, proposals, presentations, etc. All data are free to be used for any purpose, such as for manuscripts, presentations, and grant proposals. There is no obligation to include WHONDRS members as co-authors.},
doi = {10.15485/1729719},
journal = {},
number = ,
volume = ,
place = {United States},
year = {2020},
month = {1}
}