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Title: WHONDRS Summer 2019 Sampling Campaign: Global River Corridor Sediment FTICR-MS, Dissolved Organic Carbon, Aerobic Respiration, Elemental Composition, Grain Size, Total Nitrogen and Organic Carbon Content, Bacterial Abundance, and Stable Isotopes (v8)

Abstract

The WHONDRS Summer 2019 Sampling (S19S) Campaign collected samples in 97 globally distributed river corridor systems between July and September 2019. Surficial streambed sediments were collected at three locations within each site (upstream, midstream, and downstream). Surface water was collected at the downstream site. This dataset includes a portion of the data types produced from the sediment samples and does not include any results from the surface water. Surface water data can be found at https://data.ess-dive.lbl.gov/view/doi:10.15485/1603775. Future datasets from this study will include geochemical, hydrologic, and microbial data from the surface water and sediment. The S19S campaign was designed with the science community to ask questions associated with links among core/transient metabolomes, microbial metabolism, biogeochemical function, and physical properties of watershed and river corridor systems. This dataset contains (1) high resolution characterization of dissolved organic matter from sediment via 12 Tesla Fourier transform ion cyclotron resonance mass spectrometry (FTICR-MS) through the Environmental Molecular Sciences Laboratory (EMSL; https://www.pnnl.gov/environmental-molecular-sciences-laboratory); (2) dissolved organic carbon (DOC, measured as non-purgeable organic carbon, NPOC); (3) respiration rates and normalized respiration rates calculated from laboratory sediment incubations; (4) X-ray fluorescence (XRF) elemental composition; (5) grain size distribution from the < 2 millimeter fraction of sediment; (6) totalmore » organic carbon and total nitrogen content; (7) bacterial abundance flow cytometry data; (8) sediment stable isotopes (C and N); (9) site photos; (10) field and laboratory methods metadata, including international generic sample number (IGSN) mapping file; (11) file-level metadata (flmd); (12) data dictionary (dd); and (13) water and sediment mass and volume used in incubations. The FTICR-MS files are .xml, and the data package includes instructions for using Formularity (https://omics.pnl.gov/software/formularity) and an R script to process the data based on the user’s specific needs. The XRF data includes .msa, .txt, and .spx files. All other data files are .csv, .pdf, .txt, .jpg, or .jpeg.***Organic carbon is reported as water-extractable concentrations in milligrams per liter from sediment extractions in this data package. Future updates of the data package will include a normalized concentration per sediment mass extracted in milligrams per kilogram.*** This data package was originally published in December 2020. It was updated in April 2021, May 2022, November 2022, January 2023, February 2023, and August 2023. See the change history section in the data package readme for more details.« less

Authors:
ORCiD logo ; ORCiD logo ; ORCiD logo ; ; ORCiD logo ; ORCiD logo ; ORCiD logo ; ORCiD logo ; ORCiD logo ; ; ORCiD logo ; ORCiD logo ; ; ; ORCiD logo ; ORCiD logo ; ORCiD logo ; ORCiD logo ; ORCiD logo ; ORCiD logo more »; ORCiD logo ; ORCiD logo ; ; ORCiD logo ; ORCiD logo ; ORCiD logo ; « less
  1. Pacific Northwest National Laboratory
  2. Ben Gurion University of the Negev
  3. Colorado State University
  4. University of Arizona/Pacific Northwest National Laboratory
  5. Oregon State University
Publication Date:
Research Org.:
Environmental System Science Data Infrastructure for a Virtual Ecosystem (ESS-DIVE) (United States); River Corridor and Watershed Biogeochemistry SFA
Sponsoring Org.:
U.S. DOE > Office of Science > Biological and Environmental Research (BER)
Subject:
54 ENVIRONMENTAL SCIENCES
Keywords:
WHONDRS; Watershed; River corridor; Hydrology; Biogeochemistry; Hyporheic zone; Hydrologic exchange; River; Stream; Carbon; FTICR; Metabolite; Metabolomics; Mass spectrometry; Catchment; Respiration; Freshwater; Flow cytometry; ESS-DIVE File Level Metadata Reporting Format; ESS-DIVE CSV File Formatting Guidelines Reporting Format; ESS-DIVE Sample ID and Metadata Reporting Format; EARTH SCIENCE > TERRESTRIAL HYDROSPHERE > SURFACE WATER; FTICR-MS; Aerobic respiration rate; NPOC; Non-purgeable organic carbon; Elemental abundance; Grain size; Bacterial abundance; 15N; 13C; EARTH SCIENCE > TERRESTRIAL HYDROSPHERE > WATER QUALITY/WATER CHEMISTRY > ISOTOPES > STABLE ISOTOPES
Geolocation:
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OSTI Identifier:
1729719
DOI:
https://doi.org/10.15485/1729719
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Citation Formats

Goldman, Amy E, Arnon, Shai, Bar-Zeev, Edo, Chu, Rosalie K, Danczak, Robert E, Daly, Rebecca A, Delgado, Dillman, Fansler, Sarah, Forbes, Brieanne, Garayburu-Caruso, Vanessa A, Graham, Emily B, Laan, Maggi, McCall, Marcy L, McKever, Sophia, Patel, Kaizad F, Ren, Huiying, Renteria, Lupita, Resch, Charles T, Rod, Kenton A, Tfaily, Malak, Tolic, Nikola, Torgeson, Joshua M, Toyoda, Jason G, Wells, Jacqueline, Wrighton, Kelly C, Stegen, James C, and WHONDRS Consortium, The. WHONDRS Summer 2019 Sampling Campaign: Global River Corridor Sediment FTICR-MS, Dissolved Organic Carbon, Aerobic Respiration, Elemental Composition, Grain Size, Total Nitrogen and Organic Carbon Content, Bacterial Abundance, and Stable Isotopes (v8). United States: N. p., 2020. Web. doi:10.15485/1729719.
Goldman, Amy E, Arnon, Shai, Bar-Zeev, Edo, Chu, Rosalie K, Danczak, Robert E, Daly, Rebecca A, Delgado, Dillman, Fansler, Sarah, Forbes, Brieanne, Garayburu-Caruso, Vanessa A, Graham, Emily B, Laan, Maggi, McCall, Marcy L, McKever, Sophia, Patel, Kaizad F, Ren, Huiying, Renteria, Lupita, Resch, Charles T, Rod, Kenton A, Tfaily, Malak, Tolic, Nikola, Torgeson, Joshua M, Toyoda, Jason G, Wells, Jacqueline, Wrighton, Kelly C, Stegen, James C, & WHONDRS Consortium, The. WHONDRS Summer 2019 Sampling Campaign: Global River Corridor Sediment FTICR-MS, Dissolved Organic Carbon, Aerobic Respiration, Elemental Composition, Grain Size, Total Nitrogen and Organic Carbon Content, Bacterial Abundance, and Stable Isotopes (v8). United States. doi:https://doi.org/10.15485/1729719
Goldman, Amy E, Arnon, Shai, Bar-Zeev, Edo, Chu, Rosalie K, Danczak, Robert E, Daly, Rebecca A, Delgado, Dillman, Fansler, Sarah, Forbes, Brieanne, Garayburu-Caruso, Vanessa A, Graham, Emily B, Laan, Maggi, McCall, Marcy L, McKever, Sophia, Patel, Kaizad F, Ren, Huiying, Renteria, Lupita, Resch, Charles T, Rod, Kenton A, Tfaily, Malak, Tolic, Nikola, Torgeson, Joshua M, Toyoda, Jason G, Wells, Jacqueline, Wrighton, Kelly C, Stegen, James C, and WHONDRS Consortium, The. 2020. "WHONDRS Summer 2019 Sampling Campaign: Global River Corridor Sediment FTICR-MS, Dissolved Organic Carbon, Aerobic Respiration, Elemental Composition, Grain Size, Total Nitrogen and Organic Carbon Content, Bacterial Abundance, and Stable Isotopes (v8)". United States. doi:https://doi.org/10.15485/1729719. https://www.osti.gov/servlets/purl/1729719. Pub date:Wed Jan 01 00:00:00 EST 2020
@article{osti_1729719,
title = {WHONDRS Summer 2019 Sampling Campaign: Global River Corridor Sediment FTICR-MS, Dissolved Organic Carbon, Aerobic Respiration, Elemental Composition, Grain Size, Total Nitrogen and Organic Carbon Content, Bacterial Abundance, and Stable Isotopes (v8)},
author = {Goldman, Amy E and Arnon, Shai and Bar-Zeev, Edo and Chu, Rosalie K and Danczak, Robert E and Daly, Rebecca A and Delgado, Dillman and Fansler, Sarah and Forbes, Brieanne and Garayburu-Caruso, Vanessa A and Graham, Emily B and Laan, Maggi and McCall, Marcy L and McKever, Sophia and Patel, Kaizad F and Ren, Huiying and Renteria, Lupita and Resch, Charles T and Rod, Kenton A and Tfaily, Malak and Tolic, Nikola and Torgeson, Joshua M and Toyoda, Jason G and Wells, Jacqueline and Wrighton, Kelly C and Stegen, James C and WHONDRS Consortium, The},
abstractNote = {The WHONDRS Summer 2019 Sampling (S19S) Campaign collected samples in 97 globally distributed river corridor systems between July and September 2019. Surficial streambed sediments were collected at three locations within each site (upstream, midstream, and downstream). Surface water was collected at the downstream site. This dataset includes a portion of the data types produced from the sediment samples and does not include any results from the surface water. Surface water data can be found at https://data.ess-dive.lbl.gov/view/doi:10.15485/1603775. Future datasets from this study will include geochemical, hydrologic, and microbial data from the surface water and sediment. The S19S campaign was designed with the science community to ask questions associated with links among core/transient metabolomes, microbial metabolism, biogeochemical function, and physical properties of watershed and river corridor systems. This dataset contains (1) high resolution characterization of dissolved organic matter from sediment via 12 Tesla Fourier transform ion cyclotron resonance mass spectrometry (FTICR-MS) through the Environmental Molecular Sciences Laboratory (EMSL; https://www.pnnl.gov/environmental-molecular-sciences-laboratory); (2) dissolved organic carbon (DOC, measured as non-purgeable organic carbon, NPOC); (3) respiration rates and normalized respiration rates calculated from laboratory sediment incubations; (4) X-ray fluorescence (XRF) elemental composition; (5) grain size distribution from the < 2 millimeter fraction of sediment; (6) total organic carbon and total nitrogen content; (7) bacterial abundance flow cytometry data; (8) sediment stable isotopes (C and N); (9) site photos; (10) field and laboratory methods metadata, including international generic sample number (IGSN) mapping file; (11) file-level metadata (flmd); (12) data dictionary (dd); and (13) water and sediment mass and volume used in incubations. The FTICR-MS files are .xml, and the data package includes instructions for using Formularity (https://omics.pnl.gov/software/formularity) and an R script to process the data based on the user’s specific needs. The XRF data includes .msa, .txt, and .spx files. All other data files are .csv, .pdf, .txt, .jpg, or .jpeg.***Organic carbon is reported as water-extractable concentrations in milligrams per liter from sediment extractions in this data package. Future updates of the data package will include a normalized concentration per sediment mass extracted in milligrams per kilogram.*** This data package was originally published in December 2020. It was updated in April 2021, May 2022, November 2022, January 2023, February 2023, and August 2023. See the change history section in the data package readme for more details.},
doi = {10.15485/1729719},
journal = {},
number = ,
volume = ,
place = {United States},
year = {2020},
month = {1}
}