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Title: Complete Genome Sequence of the Novel Roseimicrobium sp. Strain ORNL1, a Verrucomicrobium Isolated from the Populus deltoides Rhizosphere

Dataset ·
ORCiD logo [1]
  1. Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States)
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Roseimicrobium sp. strain ORNL1 is a soil bacterium that belongs to the phylum Verrucomicrobia and was isolated from the rhizosphere of a forest Eastern cottonwood tree, Populus deltoides, in Tennessee. Its 7.9-Mb chromosome was completely sequenced using PacBio long reads and is predicted to encode 6,288 proteins and 76 RNAs.

Research Organization:
Oak Ridge National Laboratory (ORNL), Oak Ridge, TN (United States) U.S. Department of Energy Systems Biology Knowledgebase
Sponsoring Organization:
USDOE Office of Science (SC), Biological and Environmental Research (BER)
DOE Contract Number:
AC05-00OR22725
OSTI ID:
1637512
Resource Relation:
Related Information: Complete Genome Sequence of the Novel Roseimicrobium sp. Strain ORNL1, a Verrucomicrobium Isolated from the Populus deltoides Rhizosphere Mircea Podar, Joel Turner, Leah H. Burdick, Dale A. Pelletier Microbiology Resource Announcements Jul 2020, 9 (27) e00617-20; DOI: 10.1128/MRA.00617-20
Country of Publication:
United States
Language:
English

References (11)

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Identification, variation and transcription of pneumococcal repeat sequences journal February 2011
DNA–DNA hybridization values and their relationship to whole-genome sequence similarities journal January 2007
Efficiently gap-filling reaction networks journal June 2014
High-throughput ANI Analysis of 90K Prokaryotic Genomes Reveals Clear Species Boundaries posted_content October 2017
Prodigal: prokaryotic gene recognition and translation initiation site identification journal March 2010
The RAST Server: Rapid Annotations using Subsystems Technology journal January 2008
High-throughput generation, optimization and analysis of genome-scale metabolic models journal August 2010
RASTtk: A modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes journal February 2015
NCBI prokaryotic genome annotation pipeline journal June 2016
The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST) journal November 2013

Similar Records

Complete Genome Sequence of the Novel Roseimicrobium sp. Strain ORNL1, a Verrucomicrobium Isolated from the Populus deltoides Rhizosphere
Journal Article · Thu Jul 02 00:00:00 EDT 2020 · Microbiology Resource Announcements · OSTI ID:1637512
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Related Subjects

59 BASIC BIOLOGICAL SCIENCES
bioinformatics
genome
genome announcement