skip to main content
OSTI.GOV title logo U.S. Department of Energy
Office of Scientific and Technical Information

Title: In vitro methods for processing lignin and other aromatic compounds

Patent ·
OSTI ID:1771603

Enzymes for depolymerizing lignin. The enzymes include dehydrogenases, β-etherases, and glutathione lyases. The dehydrogenases can comprise one or more or LigD, LigO, LigN, and LigL. The β-etherases can comprise one or more of LigE, LigF, LigP, and BaeA. The glutathione lyases can comprise any one or more of LigG and a number of non-stereospecific, optionally recombinant glutathione lyases derived from Sphingobium sp. SYK-6, Novosphingobium aromaticivorans, Escherichia coli, Streptococcus sanguinis, Phanerochaete chrysosporium, and other microorganisms. The enzymes can be combined in compositions and/or used in methods of processing lignin or other aromatic compounds in vitro.

Research Organization:
Univ. of Wisconsin, Madison, WI (United States)
Sponsoring Organization:
USDOE
DOE Contract Number:
FC02-07ER64494; SC0018409
Assignee:
Wisconsin Alumni Research Foundation (Madison, WI)
Patent Number(s):
10,829,745
Application Number:
16/103,275
OSTI ID:
1771603
Resource Relation:
Patent File Date: 08/14/2018
Country of Publication:
United States
Language:
English

References (77)

Structural Elements of Lignin journal September 1957
Structural and Biochemical Characterization of the Early and Late Enzymes in the Lignin β-Aryl Ether Cleavage Pathway from Sphingobium sp. SYK-6 journal March 2016
Guaiacylglycerol and its beta-Guaiacyl Ether. journal January 1955
Tricin, a Flavonoid Monomer in Monocot Lignification journal February 2015
Proposal to reclassify [Sphingomonas] xenophaga Stolz et al. 2000 and [Sphingomonas] taejonensis Lee et al. 2001 as Sphingobium xenophagum comb. nov. and Sphingopyxis taejonensis comb. nov., respectively journal March 2006
Characterization of the Cα-Dehydrogenase Gene Involved in the Cleavage of β-Aryl Ether by Pseudomonas paucimobilis journal January 1993
A Group of Sequence-Related Sphingomonad Enzymes Catalyzes Cleavage of β-Aryl Ether Linkages in Lignin β-Guaiacyl and β-Syringyl Ether Dimers journal October 2014
Towards automated crystallographic structure refinement with phenix.refine journal March 2012
Biochemical transformation of lignin for deriving valued commodities from lignocellulose journal June 2017
The Kinetics of the Synthesis of Photopigments in Rhodopseudomonas spheroides journal September 1962
Stereochemical Features of Glutathione-dependent Enzymes in the Sphingobium sp. Strain SYK-6 β-Aryl Etherase Pathway journal February 2014
Phaser crystallographic software journal July 2007
Maize Tricin-Oligolignol Metabolites and their Implications for Monocot Lignification journal April 2016
Kinetic studies of pigment synthesis by non-sulfur purple bacteria journal February 1957
Large-Scale Determination of Sequence, Structure, and Function Relationships in Cytosolic Glutathione Transferases across the Biosphere journal April 2014
A bacterial enzyme degrading the model lignin compound β-etherase is a member of the glutathione- S -transferase superfamily journal May 1993
The Green Fluorescent Protein journal June 1998
The Aerobic Pseudomonads a Taxonomic Study journal May 1966
Host specificity of DNA produced by Escherichia coli: Bacterial mutations affecting the restriction and modification of DNA journal March 1966
Novosphingobium aromaticivorans uses a Nu-class glutathione S -transferase as a glutathione lyase in breaking the β-aryl ether bond of lignin journal February 2018
Improvement of molecular-replacement models with Sculptor journal March 2011
E.coli host strains significantly affect the quality of small scale plasmid DNA preparations used for sequencing journal January 1993
Description of Sphingomonas xenophaga sp. nov. for strains BN6(T) and N,N which degrade xenobiotic aromatic compounds journal January 2000
Construction of long DNA molecules using long PCR-based fusion of several fragments simultaneously journal January 2004
Feruloyl-CoA:monolignol transferase patent September 2016
Roles of the Enantioselective Glutathione S-Transferases in Cleavage of  -Aryl Ether journal March 2003
The Erythro/Threo Ratio of β-O-4 Structures as an Important Structural Characteristic of Lignin. Part 2. Changes in Erythro/Threo (E/T) Ratio of β-O-4 Structures during Delignification Reactions journal June 2002
Gene Splicing by Overlap Extension: Tailor-Made Genes Using the Polymerase Chain Reaction journal March 2013
Detection and localization of a new enzyme catalyzing the β-aryl ether cleavage in the soil bacterium ( Pseudomonas paucimobilis SYK-6) journal June 1989
The Marine Isolate Novosphingobium sp. PP1Y Shows Specific Adaptation to Use the Aromatic Fraction of Fuels as the Sole Carbon and Energy Source journal January 2011
Identification of the third glutathione S-transferase gene involved in the stereospecific cleavage of β-aryl ether in Sphingobium sp. strain SYK-6 journal November 2010
Hibiscus cannabinus feruloyl-coa:monolignol transferase patent November 2016
Clustal W and Clustal X version 2.0 journal September 2007
Lignin: Occurrence, Biogenesis and Biodegradation journal June 1990
Enzymatic cleavage of lignin β-O-4 aryl ether bonds via net internal hydrogen transfer journal January 2013
Combination of six enzymes of a marine Novosphingobium converts the stereoisomers of β-O-4 lignin model dimers into the respective monomers journal October 2015
A comprehensive review on vanilla flavor: Extraction, isolation and quantification of vanillin and others constituents journal January 2008
Are Lignins Optically Active? journal August 1999
Feruloyl-CoA:monolignol transferase patent November 2016
The Effects on Lignin Structure of Overexpression of Ferulate 5-Hydroxylase in Hybrid Poplar 1 journal April 2009
Recent advances in engineering proteins for biocatalysis: Engineering Proteins for Biocatalysis journal May 2014
Identification of Genes Required for Recycling Reducing Power during Photosynthetic Growth journal July 2005
Structural Characterization of Wheat Straw Lignin as Revealed by Analytical Pyrolysis, 2D-NMR, and Reductive Cleavage Methods journal December 2011
Cell-Free Protein Synthesis for Functional and Structural Studies book October 2013
Lignin chemistry?past, present and future journal January 1977
Formaldehyde stabilization facilitates lignin monomer production during biomass depolymerization journal October 2016
Chemoselective Metal-Free Aerobic Alcohol Oxidation in Lignin journal April 2013
Erythro/threo ratio ofβ-O-4 structures as an important structural characteristic of lignin. I: Improvement of ozonation method for the quantitative analysis of lignin side-chain structure journal June 2002
Analysis of the Structure and Function of YfcG from Escherichia coli Reveals an Efficient and Unique Disulfide Bond Reductase journal July 2009
Overlap extension PCR cloning: a simple and reliable way to create recombinant plasmids journal June 2010
EIGER detector: application in macromolecular crystallography journal August 2016
Aromatic-degrading Sphingomonas isolates from the deep subsurface. journal January 1995
Dehydrogenation Polymer−Cell Wall Complexes as a Model for Lignified Grass Walls journal January 1996
Small mobilizable multi-purpose cloning vectors derived from the Escherichia coli plasmids pK18 and pK19: selection of defined deletions in the chromosome of Corynebacterium glutamicum journal July 1994
Rapid cloning by homologous recombination in vivo journal January 1993
MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform journal July 2002
Genetic and Biochemical Investigations on Bacterial Catabolic Pathways for Lignin-Derived Aromatic Compounds journal January 2007
Correction to Analysis of the Structure and Function of YfcG from Escherichia coli Reveals an Efficient and Unique Disulfide Bond Reductase journal December 2010
In Vitro Enzymatic Depolymerization of Lignin with Release of Syringyl, Guaiacyl, and Tricin Units journal November 2017
Wood Based Lignin Reactions Important to the Biorefinery and Pulp and Paper Industries journal November 2012
A superior host strain for the over-expression of cloned genes using the T7 promoter based vectors journal January 1995
Method for modifying lignin structure using monolignol ferulate conjugates patent October 2013
Isolation and Characterization of a Subsurface Bacterium Capable of Growth on Toluene, Naphthalene, and Other Aromatic Compounds journal January 1991
Coot model-building tools for molecular graphics journal November 2004
PHENIX: a comprehensive Python-based system for macromolecular structure solution journal January 2010
UCSF Chimera?A visualization system for exploratory research and analysis journal January 2004
XDS journal January 2010
Structure and Function of YghU, a Nu-Class Glutathione Transferase Related to YfcG from Escherichia coli journal February 2011
Formic-acid-induced depolymerization of oxidized lignin to aromatics journal November 2014
Convenient synthesis of chiral lignin model compounds via optical resolution: four stereoisomers of guaiacylglycerol-β-guaiacyl ether and both enantiomers of 3-hydroxy-1-(4-hydroxy-3-methoxyphenyl)-2-(2-methoxyphenoxy)-propan-1-one (erone) journal February 2012
Incorporation of flavan-3-ols and gallic acid derivatives into lignin to improve biomass utilization patent April 2014
Structural Basis of Stereospecificity in the Bacterial Enzymatic Cleavage of β-Aryl Ether Bonds in Lignin journal December 2015
A Broad Host Range Mobilization System for In Vivo Genetic Engineering Transposon Mutagenesis in Gram Negative Bacteria journal November 1983
Bacterial Cleavage of an Arylglycerol-β-Aryl Ether Bond journal February 1973
Protein production by auto-induction in high-density shaking cultures journal May 2005
Identification of Three Alcohol Dehydrogenase Genes Involved in the Stereospecific Catabolism of Arylglycerol- -Aryl Ether by Sphingobium sp. Strain SYK-6 journal June 2009
Atypical features of a Ure2p glutathione transferase from Phanerochaete chrysosporium journal May 2013