Genome sequence of the clover-nodulating Rhizobium leguminosarum bv. trifolii strain SRDI565.

Reeve, Wayne; Drew, Elizabeth; Ballard, Ross; Melino, Vanessa; Tian, Rui; De Meyer, Sofie; Brau, Lambert; Ninawi, Mohamed; Teshima, Hazuki; Goodwin, Lynne; Chain, Patrick; Liolios, Konstantinos; Pati, Amrita; Mavromatis, Konstantinos; Ivanova, Natalia; Markowitz, Victor; Woyke, Tanja; Kyrpides, Nikos

doi:10.4056/sigs.4468250

Title: Genome sequence of the clover-nodulating Rhizobium leguminosarum bv. trifolii strain SRDI565.

Journal Article · Sun Dec 15 00:00:00 EST 2013 · Standards in Genomic Sciences

DOI:https://doi.org/10.4056/sigs.4468250· OSTI ID:1628671

Reeve, Wayne ^[1]; Drew, Elizabeth ^[2]; Ballard, Ross ^[2]; Melino, Vanessa ^[1]; Tian, Rui ^[1]; De Meyer, Sofie ^[1]; Brau, Lambert ^[3]; Ninawi, Mohamed ^[1]; Teshima, Hazuki ^[4]; Goodwin, Lynne ^[4]; Chain, Patrick ^[4]; Liolios, Konstantinos ^[5]; Pati, Amrita ^[5]; Mavromatis, Konstantinos ^[5]; Ivanova, Natalia ^[5]; Markowitz, Victor ^[6]; Woyke, Tanja ^[5]; Kyrpides, Nikos ^[5]

Murdoch Univ., WA (Australia). Centre for Rhizobium Studies
South Australian Research and Development Inst., Urrbrae (Australia)
Deakin Univ., Melbourne, VIC (Australia). Faculty of Science and Technology. School of Life and Environmental Sciences
Los Alamos National Lab. (LANL), Los Alamos, NM (United States). Biosciences Division
USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States)
Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States). Biological Data Management and Technology Center

Rhizobium leguminosarum bv. trifolii SRDI565 (syn. N8-J) is an aerobic, motile, Gramnegative, non-spore-forming rod. SRDI565 was isolated from a nodule recovered from the roots of the annual clover Trifolium subterraneum subsp. subterraneum grown in the greenhouse and inoculated with soil collected from New South Wales, Australia. SRDI565 has a broad host range for nodulation within the clover genus, however N2-fixation is sub-optimal with some Trifolium species and ineffective with others. Here we describe the features of R. leguminosarum bv. trifolii strain SRDI565, together with genome sequence information and annotation. The 6,905,599 bp high-quality-draft genome is arranged into 7 scaffolds of 7 contigs, contains 6,750 protein-coding genes and 86 RNA-only encoding genes, and is one of 100 rhizobial genomes sequenced as part of the DOE Joint Genome Institute 2010 Genomic Encyclopedia for Bacteria and Archaea-Root Nodule Bacteria (GEBA-RNB) project.

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Research Organization:: Los Alamos National Laboratory (LANL), Los Alamos, NM (United States); Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States); Lawrence Livermore National Laboratory (LLNL), Livermore, CA (United States)

Sponsoring Organization:: USDOE Office of Science (SC)

Grant/Contract Number:: AC52-06NA25396; AC02-05CH11231; AC52-07NA27344

OSTI ID:: 1628671

Journal Information:: Standards in Genomic Sciences, Vol. 9, Issue 2; ISSN 1944-3277

Publisher:: BioMed CentralCopyright Statement

Country of Publication:: United States

Language:: English

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A sulfoglycolytic Entner-Doudoroff pathway in Rhizobium leguminosarum bv. trifolii SRDI565 Li, Jinling; Epa, Ruwan; Scott, Nichollas E. Applied and Environmental Microbiology https://doi.org/10.1101/2019.12.17.868638	posted_content	December 2019
A Sulfoglycolytic Entner-Doudoroff Pathway in Rhizobium leguminosarum bv. trifolii SRDI565 Li, Jinling; Epa, Ruwan; Scott, Nichollas E. Applied and Environmental Microbiology, Vol. 86, Issue 15 https://doi.org/10.1128/aem.00750-20	journal	July 2020

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