Unveiling a classical mutant in the context of the GH3 β-glucosidase family in Neurospora crassa
Abstract
Classical fungal mutant strains obtained by mutagenesis have helped to elucidate fundamental metabolic pathways in the past. In the filamentous fungus Neurospora crassa, the gluc-1 strain was isolated long ago and characterized by its low level of β-glucosidase activity, which is essential for the degradation of cellulose, the most abundant biopolymer on Earth and the main polymeric component of the plant cell wall. Based on genomic resequencing, we hypothesized that the causative mutation resides in the β-glucosidase gene gh3-3 (bgl6, NCU08755). In this work, growth patterns, enzymatic activities and sugar utilization rates were analyzed in several mutant and overexpression strains related to gluc-1 and gh3-3. In addition, different mutants affected in the degradation and transport of cellobiose were analyzed. While overexpression of gh3-3 led to the recovery of β-glucosidase activity in the gluc-1 mutant, as well as normal utilization of cellobiose, the full gene deletion strain Δgh3-3 was found to behave differently than gluc-1 with lower secreted β-glucosidase activity, indicating a dominant role of the amino acid substitution in the point mutated gh3-3 gene of gluc-1. Our results furthermore confirm that GH3-3 is the major extracellular β-glucosidase in N. crassa and demonstrate that the two cellodextrin transporters CDT-1 and CDT-2more »
- Authors:
-
- Technical University of Munich (Germany)
- Joint BioEnergy Institute (JBEI), Emeryville, CA (United States); Pacific Northwest National Laboratory (PNNL), Richland, WA (United States)
- Pacific Northwest National Laboratory (PNNL), Richland, WA (United States)
- Chinese Academy of Sciences (CAS), Tianjin (China); National Technology Innovation Center of Synthetic Biology, Tianjin (China)
- Publication Date:
- Research Org.:
- Pacific Northwest National Laboratory (PNNL), Richland, WA (United States)
- Sponsoring Org.:
- USDOE
- OSTI Identifier:
- 2282268
- Report Number(s):
- PNNL-SA-194079
Journal ID: ISSN 2191-0855
- Grant/Contract Number:
- AC05-76RL01830
- Resource Type:
- Accepted Manuscript
- Journal Name:
- AMB Express
- Additional Journal Information:
- Journal Volume: 14; Journal Issue: 1; Journal ID: ISSN 2191-0855
- Publisher:
- Springer
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 60 APPLIED LIFE SCIENCES; β-glucosidase; gluc-1 mutant; Neurospora crassa; Cellobiose utilization
Citation Formats
Zhang, Yuxin, Nada, Basant, Baker, Scott E., Evans, James E., Tian, Chaoguang, Benz, J. Philipp, and Tamayo, Elisabeth. Unveiling a classical mutant in the context of the GH3 β-glucosidase family in Neurospora crassa. United States: N. p., 2024.
Web. doi:10.1186/s13568-023-01658-0.
Zhang, Yuxin, Nada, Basant, Baker, Scott E., Evans, James E., Tian, Chaoguang, Benz, J. Philipp, & Tamayo, Elisabeth. Unveiling a classical mutant in the context of the GH3 β-glucosidase family in Neurospora crassa. United States. https://doi.org/10.1186/s13568-023-01658-0
Zhang, Yuxin, Nada, Basant, Baker, Scott E., Evans, James E., Tian, Chaoguang, Benz, J. Philipp, and Tamayo, Elisabeth. Fri .
"Unveiling a classical mutant in the context of the GH3 β-glucosidase family in Neurospora crassa". United States. https://doi.org/10.1186/s13568-023-01658-0. https://www.osti.gov/servlets/purl/2282268.
@article{osti_2282268,
title = {Unveiling a classical mutant in the context of the GH3 β-glucosidase family in Neurospora crassa},
author = {Zhang, Yuxin and Nada, Basant and Baker, Scott E. and Evans, James E. and Tian, Chaoguang and Benz, J. Philipp and Tamayo, Elisabeth},
abstractNote = {Classical fungal mutant strains obtained by mutagenesis have helped to elucidate fundamental metabolic pathways in the past. In the filamentous fungus Neurospora crassa, the gluc-1 strain was isolated long ago and characterized by its low level of β-glucosidase activity, which is essential for the degradation of cellulose, the most abundant biopolymer on Earth and the main polymeric component of the plant cell wall. Based on genomic resequencing, we hypothesized that the causative mutation resides in the β-glucosidase gene gh3-3 (bgl6, NCU08755). In this work, growth patterns, enzymatic activities and sugar utilization rates were analyzed in several mutant and overexpression strains related to gluc-1 and gh3-3. In addition, different mutants affected in the degradation and transport of cellobiose were analyzed. While overexpression of gh3-3 led to the recovery of β-glucosidase activity in the gluc-1 mutant, as well as normal utilization of cellobiose, the full gene deletion strain Δgh3-3 was found to behave differently than gluc-1 with lower secreted β-glucosidase activity, indicating a dominant role of the amino acid substitution in the point mutated gh3-3 gene of gluc-1. Our results furthermore confirm that GH3-3 is the major extracellular β-glucosidase in N. crassa and demonstrate that the two cellodextrin transporters CDT-1 and CDT-2 are essential for growth on cellobiose when the three main N. crassa β-glucosidases are absent. Overall, these findings provide valuable insight into the mechanisms of cellulose utilization in filamentous fungi, being an essential step in the efficient production of biorefinable sugars from agricultural and forestry plant biomass.},
doi = {10.1186/s13568-023-01658-0},
journal = {AMB Express},
number = 1,
volume = 14,
place = {United States},
year = {Fri Jan 05 00:00:00 EST 2024},
month = {Fri Jan 05 00:00:00 EST 2024}
}
Works referenced in this record:
Cellodextrin Transport in Yeast for Improved Biofuel Production
journal, September 2010
- Galazka, J. M.; Tian, C.; Beeson, W. T.
- Science, Vol. 330, Issue 6000
Clustal Omega for making accurate alignments of many protein sequences: Clustal Omega for Many Protein Sequences
journal, October 2017
- Sievers, Fabian; Higgins, Desmond G.
- Protein Science, Vol. 27, Issue 1
Random and direct mutagenesis to enhance protein secretion inAshbya gossypii
journal, September 2013
- Ribeiro, Orquídea; Magalhães, Frederico; Aguiar, Tatiana Q.
- Bioengineered, Vol. 4, Issue 5
Novel enzymes for the degradation of cellulose
journal, January 2012
- Horn, Svein; Vaaje-Kolstad, Gustav; Westereng, Bjørge
- Biotechnology for Biofuels, Vol. 5, Issue 1, Article No. 45
The Putative Cellodextrin Transporter-like Protein CLP1 Is Involved in Cellulase Induction in Neurospora crassa
journal, November 2014
- Cai, Pengli; Wang, Bang; Ji, Jingxiao
- Journal of Biological Chemistry, Vol. 290, Issue 2
Automated comparative protein structure modeling with SWISS-MODEL and Swiss-PdbViewer: A historical perspective
journal, June 2009
- Guex, Nicolas; Peitsch, Manuel C.; Schwede, Torsten
- ELECTROPHORESIS, Vol. 30, Issue S1
Dissecting Cellular Function and Distribution of β-Glucosidases in Trichoderma reesei
journal, June 2021
- Pang, Ai-Ping; Wang, Haiyan; Luo, Yongsheng
- mBio, Vol. 12, Issue 3
Network of nutrient-sensing pathways and a conserved kinase cascade integrate osmolarity and carbon sensing in Neurospora crassa
journal, September 2017
- Huberman, Lori B.; Coradetti, Samuel T.; Glass, N. Louise
- Proceedings of the National Academy of Sciences, Vol. 114, Issue 41
Deletion of bglC triggers a genetic compensation response by awakening the expression of alternative beta-glucosidase
journal, October 2020
- Deflandre, Benoit; Thiébaut, Noémie; Planckaert, Sören
- Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms, Vol. 1863, Issue 10
RIP: the evolutionary cost of genome defense
journal, September 2004
- Galagan, James E.; Selker, Eric U.
- Trends in Genetics, Vol. 20, Issue 9
Functional diversity of family 3 β-glucosidases from thermophilic cellulolytic fungus Humicola insolens Y1
journal, June 2016
- Xia, Wei; Bai, Yingguo; Cui, Ying
- Scientific Reports, Vol. 6, Issue 1
Analysis of a conserved cellulase transcriptional regulator reveals inducer-independent production of cellulolytic enzymes in Neurospora crassa
journal, June 2013
- Coradetti, Samuel T.; Xiong, Yi; Glass, N. Louise
- MicrobiologyOpen, Vol. 2, Issue 4
Crystal Structure of a GH3 β-Glucosidase from the Thermophilic Fungus Chaetomium thermophilum
journal, November 2019
- Mohsin, Imran; Poudel, Nirmal; Li, Duo-Chuan
- International Journal of Molecular Sciences, Vol. 20, Issue 23
Production of a high-efficiency cellulase complex via β-glucosidase engineering in Penicillium oxalicum
journal, March 2016
- Yao, Guangshan; Wu, Ruimei; Kan, Qinbiao
- Biotechnology for Biofuels, Vol. 9, Issue 1
Improvement of cellulase activity in Trichoderma reesei by heterologous expression of a beta-glucosidase gene from Penicillium decumbens
journal, September 2011
- Ma, Liang; Zhang, Jun; Zou, Gen
- Enzyme and Microbial Technology, Vol. 49, Issue 4
Identification of a common secondary mutation in the
Neurospora crassa
knockout collection conferring a cell fusion-defective phenotype
journal, October 2023
- Montenegro-Montero, Alejandro; Goity, Alejandra; Canessa, Paulo F.
- Microbiology Spectrum, Vol. 11, Issue 5
The putative β-glucosidase BGL3I regulates cellulase induction in Trichoderma reesei
journal, November 2018
- Zou, Gen; Jiang, Yanping; Liu, Rui
- Biotechnology for Biofuels, Vol. 11, Issue 1
MEGA11: Molecular Evolutionary Genetics Analysis Version 11
journal, April 2021
- Tamura, Koichiro; Stecher, Glen; Kumar, Sudhir
- Molecular Biology and Evolution, Vol. 38, Issue 7
The role of morphological changes in algae adaptation to nutrient stress at the single-cell level
journal, February 2021
- Yan, Peng; Guo, Jin-song; Zhang, Ping
- Science of The Total Environment, Vol. 754
Structural studies of a glycoside hydrolase family 3 β-glucosidase from the model fungusNeurospora crassa
journal, November 2018
- Karkehabadi, Saeid; Hansson, Henrik; Mikkelsen, Nils Egil
- Acta Crystallographica Section F Structural Biology Communications, Vol. 74, Issue 12
Identifying the gluc-1 and gluc-2 mutations in Neurospora crassa by genome resequencing
journal, October 2022
- McCluskey, Kevin; Baker, Scott E.
- Journal of Genetics, Vol. 101, Issue 2
Enabling a Community to Dissect an Organism: Overview of the Neurospora Functional Genomics Project
book, March 2007
- Dunlap, Jay C.; Borkovich, Katherine A.; Henn, Matthew R.
- Fungal Genomics
Cellulase of Neurospora crassa
journal, April 1977
- Eberhart, B. M.; Beck, R. S.; Goolsby, K. M.
- Journal of Bacteriology, Vol. 130, Issue 1
Enzymatic assembly of DNA molecules up to several hundred kilobases
journal, April 2009
- Gibson, Daniel G.; Young, Lei; Chuang, Ray-Yuan
- Nature Methods, Vol. 6, Issue 5, p. 343-345
Studies on sugar transporter CRT1 reveal new characteristics that are critical for cellulase induction in Trichoderma reesei
journal, September 2020
- Havukainen, Sami; Valkonen, Mari; Koivuranta, Kari
- Biotechnology for Biofuels, Vol. 13, Issue 1
Adaptation of dinitrosalicylic acid method to microtiter plates
journal, January 2010
- Gonçalves, Cristiana; Rodriguez-Jasso, Rosa Maria; Gomes, Nelma
- Analytical Methods, Vol. 2, Issue 12
The role of morphological changes in Microcystis adaptation to nutrient availability at the colonial level
journal, June 2022
- Feng, Ganyu; Zhu, Wei; Duan, Zhipeng
- Harmful Algae, Vol. 115
Rediscovery by Whole Genome Sequencing: Classical Mutations and Genome Polymorphisms in Neurospora crassa
journal, September 2011
- McCluskey, Kevin; Wiest, Aric E.; Grigoriev, Igor V.
- G3: Genes|Genomes|Genetics, Vol. 1, Issue 4
Tools for Fungal Proteomics: Multifunctional Neurospora Vectors for Gene Replacement, Protein Expression and Protein Purification
journal, January 2009
- Honda, Shinji; Selker, Eric U.
- Genetics, Vol. 182, Issue 1
Analysis of carbohydrate-active enzymes and sugar transporters in Penicillium echinulatum: A genome-wide comparative study of the fungal lignocellulolytic system
journal, May 2022
- Lenz, Alexandre Rafael; Balbinot, Eduardo; Souza de Oliveira, Nikael
- Gene, Vol. 822
Cellulase production by Neurospora crassa on wheat straw
journal, August 1999
- Romero, M. D.; Aguado, J.; González, L.
- Enzyme and Microbial Technology, Vol. 25, Issue 3-5
Evidence of a Critical Role for Cellodextrin Transporte 2 (CDT-2) in Both Cellulose and Hemicellulose Degradation and Utilization in Neurospora crassa
journal, February 2014
- Cai, Pengli; Gu, Ruimeng; Wang, Bang
- PLoS ONE, Vol. 9, Issue 2
Morphological changes in response to environmental stresses in the fungal plant pathogen Zymoseptoria tritici
journal, July 2019
- Francisco, Carolina Sardinha; Ma, Xin; Zwyssig, Maria Manuela
- Scientific Reports, Vol. 9, Issue 1
Induction of lignocellulose-degrading enzymes in Neurospora crassa by cellodextrins
journal, April 2012
- Znameroski, E. A.; Coradetti, S. T.; Roche, C. M.
- Proceedings of the National Academy of Sciences, Vol. 109, Issue 16
Use of Dinitrosalicylic Acid Reagent for Determination of Reducing Sugar
journal, March 1959
- Miller, G. L.
- Analytical Chemistry, Vol. 31, Issue 3
β-GLUCOSIDASE SYSTEM OF
NEUROSPORA CRASSA
I. β-
journal, April 1964
- Eberhart, Bruce; Cross, David F.; Chase, Lewis R.
- Journal of Bacteriology, Vol. 87, Issue 4
Evidence for Transceptor Function of Cellodextrin Transporters in Neurospora crassa
journal, December 2013
- Znameroski, Elizabeth A.; Li, Xin; Tsai, Jordan C.
- Journal of Biological Chemistry, Vol. 289, Issue 5
The genome sequence of the filamentous fungus Neurospora crassa
journal, April 2003
- Galagan, James E.; Calvo, Sarah E.; Borkovich, Katherine A.
- Nature, Vol. 422, Issue 6934
Using a model filamentous fungus to unravel mechanisms of lignocellulose deconstruction
journal, January 2013
- Znameroski, Elizabeth A.; Glass, N. Louise
- Biotechnology for Biofuels, Vol. 6, Issue 1
The Renaissance of Neurospora crassa: How a Classical Model System is Used for Applied Research
book, April 2016
- Seibert, Tanja; Thieme, Nils; Benz, J. Philipp
- Fungal Biology
Regulation of the lignocellulolytic response in filamentous fungi
journal, July 2016
- Huberman, Lori B.; Liu, Jason; Qin, Lina
- Fungal Biology Reviews, Vol. 30, Issue 3
Disruption of non-anchored cell wall protein NCW-1 promotes cellulase production by increasing cellobiose uptake in Neurospora crassa
journal, December 2016
- Lin, Liangcai; Chen, Yong; Li, Jingen
- Biotechnology Letters, Vol. 39, Issue 4
The F-box protein gene
exo
-
1
is a target for reverse engineering enzyme hypersecretion in filamentous fungi
journal, June 2021
- Gabriel, Raphael; Thieme, Nils; Liu, Qian
- Proceedings of the National Academy of Sciences, Vol. 118, Issue 26
The cellulase complex of Neurospora crassa: activity, stability and release
journal, July 1990
- Yazdi, M. T.; Woodward, J. R.; Radford, A.
- Journal of General Microbiology, Vol. 136, Issue 7
Unravelling the molecular basis for light modulated cellulase gene expression - the role of photoreceptors in Neurospora crassa
journal, January 2012
- Schmoll, Monika; Tian, Chaoguang; Sun, Jianping
- BMC Genomics, Vol. 13, Issue 1
SWISS-MODEL: homology modelling of protein structures and complexes
journal, May 2018
- Waterhouse, Andrew; Bertoni, Martino; Bienert, Stefan
- Nucleic Acids Research, Vol. 46, Issue W1
Direct cellobiose production from cellulose using sextuple beta-glucosidase gene deletion Neurospora crassa mutants
journal, March 2013
- Wu, Weihua; Hildebrand, Amanda; Kasuga, Takao
- Enzyme and Microbial Technology, Vol. 52, Issue 3
Dissecting cellobiose metabolic pathway and its application in biorefinery through consolidated bioprocessing in Myceliophthora thermophila
journal, November 2019
- Li, Jingen; Gu, Shuying; Zhao, Zhen
- Fungal Biology and Biotechnology, Vol. 6, Issue 1
The β-glucosidase system of Neurospora crassa
journal, October 1964
- Mahadevan, P. R.; Eberhart, Bruce
- Archives of Biochemistry and Biophysics, Vol. 108, Issue 1
Localization of the β-Glucosidases in
Neurospora crassa
journal, February 1970
- Eberhart, Bruce M.; Beck, Reta S.
- Journal of Bacteriology, Vol. 101, Issue 2
Chromosomal loci of Neurospora crassa
journal, December 1982
- Perkins, D. D.; Radford, A.; Newmeyer, D.
- Microbiological Reviews, Vol. 46, Issue 4
Systems analysis of plant cell wall degradation by the model filamentous fungus Neurospora crassa
journal, December 2009
- Tian, Chaoguang; Beeson, William T.; Iavarone, Anthony T.
- Proceedings of the National Academy of Sciences, Vol. 106, Issue 52
Functional analyses of xylanolytic enzymes involved in xylan degradation and utilization in Neurospora crassa
journal, February 2021
- Wang, Ruijie; Arioka, Manabu
- International Journal of Biological Macromolecules, Vol. 169
Location and contribution of individual β-glucosidase from Neurospora crassa to total β-glucosidase activity
journal, October 2013
- Wu, Weihua; Kasuga, Takao; Xiong, Xiaochao
- Archives of Microbiology, Vol. 195, Issue 12