CD8+ T cells control SIV infection using both cytolytic effects and non-cytolytic suppression of virus production
Abstract
Whether CD8+ T lymphocytes control human immunodeficiency virus infection by cytopathic or non-cytopathic mechanisms is not fully understood. Multiple studies highlighted non-cytopathic effects, but one hypothesis is that cytopathic effects of CD8+ T cells occur before viral production. Here, to examine the role of CD8+ T cells prior to virus production, we treated SIVmac251-infected macaques with an integrase inhibitor combined with a CD8-depleting antibody, or with either reagent alone. We analyzed the ensuing viral dynamics using a mathematical model that included infected cells pre- and post- viral DNA integration to compare different immune effector mechanisms. Macaques receiving the integrase inhibitor alone experienced greater viral load decays, reaching lower nadirs on treatment, than those treated also with the CD8-depleting antibody. Models including CD8+ cell-mediated reduction of viral production (non-cytolytic) were found to best explain the viral profiles across all macaques, in addition an effect in killing infected cells pre-integration (cytolytic) was supported in some of the best models. Our results suggest that CD8+ T cells have both a cytolytic effect on infected cells before viral integration, and a direct, non-cytolytic effect by suppressing viral production.
- Authors:
-
- Univ. of Pittsburgh, PA (United States)
- Fred Hutchinson Cancer Research Center, Seattle, WA (United States)
- Los Alamos National Laboratory (LANL), Los Alamos, NM (United States)
- Los Alamos National Laboratory (LANL), Los Alamos, NM (United States); Univ. of Lisbon (Portugal). Biomathematics Laboratory
- Publication Date:
- Research Org.:
- Los Alamos National Laboratory (LANL), Los Alamos, NM (United States)
- Sponsoring Org.:
- USDOE National Nuclear Security Administration (NNSA); National Institutes of Health (NIH); Fundação para a Ciência e Tecnologia
- OSTI Identifier:
- 2222620
- Report Number(s):
- LA-UR-21-32239
Journal ID: ISSN 2041-1723
- Grant/Contract Number:
- 89233218CNA000001; P01 AI169615; R01 AI152703; R01 AI104373; UM1 AI164561; R01 AI028433; R01 OD011095; R01 AI150500; R01 HL117715; R01 AI119346; R01 DK119936; DK131476; T32 AI065380; T32 AI060525; PTDC/MAT-APL/31602/2017
- Resource Type:
- Accepted Manuscript
- Journal Name:
- Nature Communications
- Additional Journal Information:
- Journal Volume: 14; Journal Issue: 1; Journal ID: ISSN 2041-1723
- Publisher:
- Nature Publishing Group
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 59 BASIC BIOLOGICAL SCIENCES; biological science; simian immunodeficiency virus; rhesus macaques; integrase inhibitor; raltegravir; CD8+ cell depletion; viral dynamics; CTLs; cytotoxic
Citation Formats
Policicchio, Benjamin B., Cardozo-Ojeda, Erwing Fabian, Xu, Cuiling, Ma, Dongzhu, He, Tianyu, Raehtz, Kevin D., Sivanandham, Ranjit, Kleinman, Adam J., Perelson, Alan S., Apetrei, Cristian, Pandrea, Ivona, and Ribeiro, Ruy M. CD8+ T cells control SIV infection using both cytolytic effects and non-cytolytic suppression of virus production. United States: N. p., 2023.
Web. doi:10.1038/s41467-023-42435-8.
Policicchio, Benjamin B., Cardozo-Ojeda, Erwing Fabian, Xu, Cuiling, Ma, Dongzhu, He, Tianyu, Raehtz, Kevin D., Sivanandham, Ranjit, Kleinman, Adam J., Perelson, Alan S., Apetrei, Cristian, Pandrea, Ivona, & Ribeiro, Ruy M. CD8+ T cells control SIV infection using both cytolytic effects and non-cytolytic suppression of virus production. United States. https://doi.org/10.1038/s41467-023-42435-8
Policicchio, Benjamin B., Cardozo-Ojeda, Erwing Fabian, Xu, Cuiling, Ma, Dongzhu, He, Tianyu, Raehtz, Kevin D., Sivanandham, Ranjit, Kleinman, Adam J., Perelson, Alan S., Apetrei, Cristian, Pandrea, Ivona, and Ribeiro, Ruy M. Fri .
"CD8+ T cells control SIV infection using both cytolytic effects and non-cytolytic suppression of virus production". United States. https://doi.org/10.1038/s41467-023-42435-8. https://www.osti.gov/servlets/purl/2222620.
@article{osti_2222620,
title = {CD8+ T cells control SIV infection using both cytolytic effects and non-cytolytic suppression of virus production},
author = {Policicchio, Benjamin B. and Cardozo-Ojeda, Erwing Fabian and Xu, Cuiling and Ma, Dongzhu and He, Tianyu and Raehtz, Kevin D. and Sivanandham, Ranjit and Kleinman, Adam J. and Perelson, Alan S. and Apetrei, Cristian and Pandrea, Ivona and Ribeiro, Ruy M.},
abstractNote = {Whether CD8+ T lymphocytes control human immunodeficiency virus infection by cytopathic or non-cytopathic mechanisms is not fully understood. Multiple studies highlighted non-cytopathic effects, but one hypothesis is that cytopathic effects of CD8+ T cells occur before viral production. Here, to examine the role of CD8+ T cells prior to virus production, we treated SIVmac251-infected macaques with an integrase inhibitor combined with a CD8-depleting antibody, or with either reagent alone. We analyzed the ensuing viral dynamics using a mathematical model that included infected cells pre- and post- viral DNA integration to compare different immune effector mechanisms. Macaques receiving the integrase inhibitor alone experienced greater viral load decays, reaching lower nadirs on treatment, than those treated also with the CD8-depleting antibody. Models including CD8+ cell-mediated reduction of viral production (non-cytolytic) were found to best explain the viral profiles across all macaques, in addition an effect in killing infected cells pre-integration (cytolytic) was supported in some of the best models. Our results suggest that CD8+ T cells have both a cytolytic effect on infected cells before viral integration, and a direct, non-cytolytic effect by suppressing viral production.},
doi = {10.1038/s41467-023-42435-8},
journal = {Nature Communications},
number = 1,
volume = 14,
place = {United States},
year = {Fri Oct 20 00:00:00 EDT 2023},
month = {Fri Oct 20 00:00:00 EDT 2023}
}
Works referenced in this record:
Early Antigen Presentation of Protective HIV-1 KF11Gag and KK10Gag Epitopes from Incoming Viral Particles Facilitates Rapid Recognition of Infected Cells by Specific CD8+T Cells
journal, March 2013
- Kløverpris, Henrik N.; Payne, Rebecca P.; Sacha, Jonah B.
- Journal of Virology, Vol. 87, Issue 5
Parameter estimation and uncertainty quantification for systems biology models
journal, December 2019
- Mitra, Eshan D.; Hlavacek, William S.
- Current Opinion in Systems Biology, Vol. 18
Driving the Model to Its Limit: Profile Likelihood Based Model Reduction
journal, September 2016
- Maiwald, Tim; Hass, Helge; Steiert, Bernhard
- PLOS ONE, Vol. 11, Issue 9
Does Cytolysis by CD8 + T Cells Drive Immune Escape in HIV Infection?
journal, September 2010
- Balamurali, Mehala; Petravic, Janka; Loh, Liyen
- The Journal of Immunology, Vol. 185, Issue 9
A Nonhuman Primate Model for the Selective Elimination of CD8+ Lymphocytes Using a Mouse-Human Chimeric Monoclonal Antibody
journal, June 1999
- Schmitz, Jörn E.; Simon, Meredith A.; Kuroda, Marcelo J.
- The American Journal of Pathology, Vol. 154, Issue 6
CD8+ lymphocyte control of SIV infection during antiretroviral therapy
journal, October 2018
- Cao, Youfang; Cartwright, Emily K.; Silvestri, Guido
- PLOS Pathogens, Vol. 14, Issue 10
CD8 + Memory T Cells Appear Exhausted within Hours of Acute Virus Infection
journal, September 2013
- Hosking, Martin P.; Flynn, Claudia T.; Botten, Jason
- The Journal of Immunology, Vol. 191, Issue 8
Human immunodeficiency virus genetic variation that can escape cytotoxic T cell recognition
journal, December 1991
- Phillips, Rodney E.; Rowland-Jones, Sarah; Nixon, Douglas F.
- Nature, Vol. 354, Issue 6353
Increased Natural Killer Cell Activity in Viremic HIV-1 Infection
journal, October 2004
- Alter, Galit; Malenfant, Jessica M.; Delabre, Rosemary M.
- The Journal of Immunology, Vol. 173, Issue 8
Temporal association of cellular immune responses with the initial control of viremia in primary human immunodeficiency virus type 1 syndrome.
journal, January 1994
- Koup, R. A.; Safrit, J. T.; Cao, Y.
- Journal of Virology, Vol. 68, Issue 7
Modeling SIV kinetics supports that cytotoxic response drives natural control and unravels heterogeneous populations of infected cells
posted_content, January 2020
- Madelain, V.; Passaes, C.; Millet, A.
Differential Impact of In Vivo CD8 + T Lymphocyte Depletion in Controller versus Progressor Simian Immunodeficiency Virus-Infected Macaques
journal, June 2015
- Chowdhury, Ankita; Hayes, Timothy L.; Bosinger, Steven E.
- Journal of Virology, Vol. 89, Issue 17
CD8+ lymphocytes can control HIV infection in vitro by suppressing virus replication
journal, December 1986
- Walker, C.; Moody, D.; Stites, D.
- Science, Vol. 234, Issue 4783
CAF-Mediated Human Immunodeficiency Virus (HIV) Type 1 Transcriptional Inhibition Is Distinct from α-Defensin-1 HIV Inhibition
journal, June 2003
- Chang, Theresa Li-Yun; François, Fleur; Mosoian, Arevik
- Journal of Virology, Vol. 77, Issue 12
In Vivo CD8+ T-Cell Suppression of SIV Viremia Is Not Mediated by CTL Clearance of Productively Infected Cells
journal, January 2010
- Wong, Joseph K.; Strain, Matthew C.; Porrata, Rodin
- PLoS Pathogens, Vol. 6, Issue 1
Why Don't CD8+ T Cells Reduce the Lifespan of SIV-Infected Cells In Vivo?
journal, September 2011
- Elemans, Marjet; Seich al Basatena, Nafisa-Katrin; Klatt, Nichole R.
- PLoS Computational Biology, Vol. 7, Issue 9
CD8+ Lymphocytes Control Viral Replication in SIVmac239-Infected Rhesus Macaques without Decreasing the Lifespan of Productively Infected Cells
journal, January 2010
- Klatt, Nichole R.; Shudo, Emi; Ortiz, Alex M.
- PLoS Pathogens, Vol. 6, Issue 1
HIV-1 Nef protein protects infected primary cells against killing by cytotoxic T lymphocytes
journal, January 1998
- Collins, Kathleen L.; Chen, Benjamin K.; Kalams, Spyros A.
- Nature, Vol. 391, Issue 6665
Multi-dose Romidepsin Reactivates Replication Competent SIV in Post-antiretroviral Rhesus Macaque Controllers
journal, September 2016
- Policicchio, Benjamin B.; Xu, Cuiling; Brocca-Cofano, Egidio
- PLOS Pathogens, Vol. 12, Issue 9
Can Non-lytic CD8+ T Cells Drive HIV-1 Escape?
journal, November 2013
- Seich al Basatena, Nafisa-Katrin; Chatzimichalis, Konstantinos; Graw, Frederik
- PLoS Pathogens, Vol. 9, Issue 11
Gag-Specific CD8 + T Lymphocytes Recognize Infected Cells before AIDS-Virus Integration and Viral Protein Expression
journal, February 2007
- Sacha, Jonah B.; Chung, Chungwon; Rakasz, Eva G.
- The Journal of Immunology, Vol. 178, Issue 5
Suppression of simian immunodeficiency virus replication in vitro by CD8+ lymphocytes.
journal, April 1988
- Kannagi, M.; Chalifoux, L. V.; Lord, C. I.
- The Journal of Immunology, Vol. 140, Issue 7
Determination of virus burst size in vivo using a single-cycle SIV in rhesus macaques
journal, November 2007
- Chen, H. Y.; Di Mascio, M.; Perelson, A. S.
- Proceedings of the National Academy of Sciences, Vol. 104, Issue 48
Canonical Wnts Mediate CD8 + T Cell Noncytolytic Anti–HIV-1 Activity and Correlate with HIV-1 Clinical Status
journal, September 2020
- Wallace, Jennillee; Narasipura, Srinivas D.; Sha, Beverly E.
- The Journal of Immunology, Vol. 205, Issue 8
Functional Cure of SIVagm Infection in Rhesus Macaques Results in Complete Recovery of CD4+ T Cells and Is Reverted by CD8+ Cell Depletion
journal, August 2011
- Pandrea, Ivona; Gaufin, Thaidra; Gautam, Rajeev
- PLoS Pathogens, Vol. 7, Issue 8
Escape of Human Immunodeficiency Virus from Immune Control
journal, April 1997
- McMichael, Andrew J.; Phillips, Rodney E.
- Annual Review of Immunology, Vol. 15, Issue 1
Innate, non-cytolytic CD8+ T cell-mediated suppression of HIV replication by MHC-independent inhibition of virus transcription
journal, September 2020
- Zanoni, Michelle; Palesch, David; Pinacchio, Claudia
- PLOS Pathogens, Vol. 16, Issue 9
HIV preferentially infects HIV-specific CD4+ T cells
journal, May 2002
- Douek, Daniel C.; Brenchley, Jason M.; Betts, Michael R.
- Nature, Vol. 417, Issue 6884
Biologically-Directed Modeling Reflects Cytolytic Clearance of SIV-Infected Cells In Vivo in Macaques
journal, September 2012
- Wick, W. David; Yang, Otto O.
- PLoS ONE, Vol. 7, Issue 9
Role of CD8+ Lymphocytes in Control of Simian Immunodeficiency Virus Infection and Resistance to Rechallenge after Transient Early Antiretroviral Treatment
journal, November 2001
- Lifson, J. D.; Rossio, J. L.; Piatak, M.
- Journal of Virology, Vol. 75, Issue 21
Characterization of CD56–/CD16+natural killer (NK) cells: A highly dysfunctional NK subset expanded in HIV-infected viremic individuals
journal, February 2005
- Mavilio, Domenico; Lombardo, Gabriella; Benjamin, Janet
- Proceedings of the National Academy of Sciences, Vol. 102, Issue 8
Perforin and the granule exocytosis cytotoxicity pathway
journal, October 2003
- Catalfamo, Marta; Henkart, Pierre A.
- Current Opinion in Immunology, Vol. 15, Issue 5
Identification of RANTES, MIP-1alpha, and MIP-1beta as the Major HIV-Suppressive Factors Produced by CD8+ T Cells
journal, December 1995
- Cocchi, F.; DeVico, A. L.; Garzino-Demo, A.
- Science, Vol. 270, Issue 5243
The presence of protective cytotoxic T lymphocytes does not correlate with shorter lifespans of productively infected cells in HIV-1 infection
journal, January 2016
- Spits, Hilde B.; Mudrikova, Tania; Schellens, Ingrid M. M.
- AIDS, Vol. 30, Issue 1
Control of Viremia in Simian Immunodeficiency Virus Infection by CD8+ Lymphocytes
journal, February 1999
- Schmitz, Jorn E.; Kuroda, Marcelo J.; Santra, Sampa
- Science, Vol. 283, Issue 5403, p. 857-860
Mechanisms of CD8 + T cell-mediated suppression of HIV/SIV replication
journal, March 2018
- McBrien, Julia Bergild; Kumar, Nitasha A.; Silvestri, Guido
- European Journal of Immunology, Vol. 48, Issue 6
Treatment with integrase inhibitor suggests a new interpretation of HIV RNA decay curves that reveals a subset of cells with slow integration
journal, July 2017
- Cardozo, E. Fabian; Andrade, Adriana; Mellors, John W.
- PLOS Pathogens, Vol. 13, Issue 7
Inhibition of Adaptive Immune Responses Leads to a Fatal Clinical Outcome in SIV-Infected Pigtailed Macaques but Not Vervet African Green Monkeys
journal, December 2009
- Schmitz, Jörn E.; Zahn, Roland C.; Brown, Charles R.
- PLoS Pathogens, Vol. 5, Issue 12
The dynamics of simian immunodeficiency virus after depletion of CD8+ cells
journal, August 2018
- Cardozo, Erwing Fabian; Apetrei, Cristian; Pandrea, Ivona
- Immunological Reviews, Vol. 285, Issue 1
Experimental depletion of CD8+ cells in acutely SIVagm-Infected African Green Monkeys results in increased viral replication
journal, January 2010
- Gaufin, Thaidra; Ribeiro, Ruy M.; Gautam, Rajeev
- Retrovirology, Vol. 7, Issue 1
CD8+ T cells promote HIV latency by remodeling CD4+ T cell metabolism to enhance their survival, quiescence, and stemness
journal, May 2023
- Mutascio, Simona; Mota, Talia; Franchitti, Lavinia
- Immunity, Vol. 56, Issue 5
Virus-specific CD8+ cytotoxic T-lymphocyte activity associated with control of viremia in primary human immunodeficiency virus type 1 infection.
journal, January 1994
- Borrow, P.; Lewicki, H.; Hahn, B. H.
- Journal of Virology, Vol. 68, Issue 9
Distinct HIV-1 Escape Patterns Selected by Cytotoxic T Cells with Identical Epitope Specificity
journal, February 2013
- Yagita, Yuichi; Kuse, Nozomi; Kuroki, Kimiko
- Journal of Virology, Vol. 87, Issue 4
NK cells in HIV-1 infection: evidence for their role in the control of HIV-1 infection
journal, January 2009
- Alter, G.; Altfeld, M.
- Journal of Internal Medicine, Vol. 265, Issue 1
Antiviral pressure exerted by HIV-l-specific cytotoxic T lymphocytes (CTLs) during primary infection demonstrated by rapid selection of CTL escape virus
journal, February 1997
- Borrow, Persephone; Lewicki, Hanna; Wei, Xiping
- Nature Medicine, Vol. 3, Issue 2
Decreased perforin and granzyme B expression in senescent HIV-1-specific cytotoxic T lymphocytes
journal, February 2005
- Yang, Otto O.; Lin, Holly; Dagarag, Mirabelle
- Virology, Vol. 332, Issue 1
Modeling the within-host dynamics of HIV infection
journal, September 2013
- Perelson, Alan S.; Ribeiro, Ruy M.
- BMC Biology, Vol. 11, Issue 1
Testing structural identifiability by a simple scaling method
journal, November 2020
- Castro, Mario; de Boer, Rob J.
- PLOS Computational Biology, Vol. 16, Issue 11
CD8 + Cell Depletion of SHIV89.6P-Infected Macaques Induces CD4 + T Cell Proliferation that Contributes to Increased Viral Loads
journal, September 2009
- Mueller, Yvonne M.; Do, Duc H.; Boyer, Jean D.
- The Journal of Immunology, Vol. 183, Issue 8
Notwithstanding Circumstantial Alibis, Cytotoxic T Cells Can Be Major Killers of HIV-1-Infected Cells
journal, May 2016
- Gadhamsetty, Saikrishna; Coorens, Tim; de Boer, Rob J.
- Journal of Virology, Vol. 90, Issue 16
Administration of an Anti-CD8 Monoclonal Antibody Interferes with the Clearance of Chimeric Simian/Human Immunodeficiency Virus during Primary Infections of Rhesus Macaques
journal, January 1998
- Matano, Tetsuro; Shibata, Riri; Siemon, Christine
- Journal of Virology, Vol. 72, Issue 1
Dramatic Rise in Plasma Viremia after CD8 + T Cell Depletion in Simian Immunodeficiency Virus–infected Macaques
journal, March 1999
- Jin, Xia; Bauer, Daniel E.; Tuttleton, Sarah E.
- The Journal of Experimental Medicine, Vol. 189, Issue 6
Implications of CTL-Mediated Killing of HIV-Infected Cells during the Non-Productive Stage of Infection
journal, February 2011
- Althaus, Christian L.; De Boer, Rob J.
- PLoS ONE, Vol. 6, Issue 2
Selection and Accumulation of an HIV-1 Escape Mutant by Three Types of HIV-1-Specific Cytotoxic T Lymphocytes Recognizing Wild-Type and/or Escape Mutant Epitopes
journal, February 2012
- Akahoshi, Tomohiro; Chikata, Takayuki; Tamura, Yoshiko
- Journal of Virology, Vol. 86, Issue 4
Simian Immunodeficiency Virus Evades a Dominant Epitope-Specific Cytotoxic T Lymphocyte Response Through a Mutation Resulting in the Accelerated Dissociation of Viral Peptide and MHC Class I
journal, June 2000
- Chen, Zheng W.; Craiu, Abie; Shen, Ling
- The Journal of Immunology, Vol. 164, Issue 12
Structural and practical identifiability analysis of partially observed dynamical models by exploiting the profile likelihood
journal, June 2009
- Raue, A.; Kreutz, C.; Maiwald, T.
- Bioinformatics, Vol. 25, Issue 15
Dynamics of Simian Immunodeficiency Virus Two-Long-Terminal-Repeat Circles in the Presence and Absence of CD8 + Cells
journal, April 2018
- Policicchio, Benjamin B.; Cardozo, Erwing Fabian; Sette, Paola
- Journal of Virology, Vol. 92, Issue 13
24 Hours in the Life of HIV-1 in a T Cell Line
journal, January 2013
- Mohammadi, Pejman; Desfarges, Sébastien; Bartha, István
- PLoS Pathogens, Vol. 9, Issue 1
Fas and Fas ligand: lpr and gld mutations
journal, January 1995
- Nagata, Shigekazu; Suda, Takashi
- Immunology Today, Vol. 16, Issue 1
Escape Mutations in HIV Infection and its Impact on CD8+ T Cell Responses
journal, August 2007
- Mariola Lopez,
- Current Molecular Medicine, Vol. 7, Issue 5
CD8 + Lymphocytes Are Required for Maintaining Viral Suppression in SIV-Infected Macaques Treated with Short-Term Antiretroviral Therapy
journal, September 2016
- Cartwright, Emily K.; Spicer, Lori; Smith, S. Abigail
- Immunity, Vol. 45, Issue 3
Expression of Chemokine and Inhibitory Receptors on Natural Killer Cells: Effect of Immune Activation and HIV Viremia
journal, April 2004
- Kottilil, S.; Shin, K.; Planta, M.
- The Journal of Infectious Diseases, Vol. 189, Issue 7
The search for the CD8+ cell anti-HIV factor (CAF)
journal, December 2003
- Levy, Jay A.
- Trends in Immunology, Vol. 24, Issue 12