DOE PAGES title logo U.S. Department of Energy
Office of Scientific and Technical Information

Title: A Genomic Island of Vibrio cholerae Encodes a Three-Component Cytotoxin with Monomer and Protomer Forms Structurally Similar to Alpha-Pore-Forming Toxins

Abstract

Alpha-pore-forming toxins (α-PFTs) are secreted by many species of bacteria, including Escherichia coli, Aeromonas hydrophila, and Bacillus thuringiensis, as part of their arsenal of virulence factors, and are often cytotoxic. In particular, for α-PFTs, the membrane-spanning channel they form is composed of hydrophobic α-helices. These toxins oligomerize at the surface of target cells and transition from a soluble to a protomer state in which they expose their hydrophobic regions and insert into the membrane to form a pore. The pores may be composed of homooligomers of one component or heterooligomers with two or three components, resulting in bi- or tripartite toxins. The multicomponent α-PFTs are often expressed from a single operon. Recently, motility-associated killing factor A (MakA), an α-PFT, was discovered in Vibrio cholerae. We report that makA is found on the V. cholerae GI-10 genomic island within an operon containing genes for two other potential α-PFTs, MakB and MakE. We determined the X-ray crystal structures for MakA, MakB, and MakE and demonstrated that all three are structurally related to the α-PFT family in the soluble state, and we modeled their protomer state based on the α-PFT AhlB from A. hydrophila. We found that MakA alone is cytotoxic at micromolarmore » concentrations. However, combining MakA with MakB and MakE is cytotoxic at nanomolar concentrations, with specificity for J774 macrophage cells. Our data suggest that MakA, -B, and -E are α-PFTs that potentially act as a tripartite pore-forming toxin with specificity for phagocytic cells. The bacterium Vibrio cholerae causes gastrointestinal, wound, and skin infections. The motility-associated killing factor A (MakA) was recently shown to be cytotoxic against colon, prostate, and other cancer cells. However, at the outset of this study, the capacity of MakA to damage cells in combination with other Mak proteins encoded in the same operon had not been elucidated. We determined the structures of three Mak proteins and established that they are structurally related to the α-PFTs. Compared to MakA alone, the combination of all three toxins was more potent specifically in mouse macrophages. This study highlights the idea that the Mak toxins are selectively cytotoxic and thus may function as a tripartite toxin with cell type specificity.« less

Authors:
 [1];  [2];  [1];  [2];  [1];  [2];  [2];  [2];  [1];  [3];  [3];  [2]; ORCiD logo [1]
  1. Northwestern University, Chicago, IL (United States)
  2. University of Chicago, IL (United States); Argonne National Laboratory (ANL), Lemont, IL (United States)
  3. University of California, Riverside, CA (United States)
Publication Date:
Research Org.:
Argonne National Laboratory (ANL), Argonne, IL (United States)
Sponsoring Org.:
USDOE Office of Science (SC), Biological and Environmental Research (BER); National Institute of Allergy and Infectious Diseases (NIAID); National Institutes of Health (NIH); Department of Health and Human Services
OSTI Identifier:
1909700
Grant/Contract Number:  
AC02-06CH11357; HHSN272201700060C; R01 AI092825-09; R01 AI092825-S1; K99 GM143571-01; T32 GM008382
Resource Type:
Accepted Manuscript
Journal Name:
Journal of Bacteriology
Additional Journal Information:
Journal Volume: 204; Journal Issue: 5; Journal ID: ISSN 0021-9193
Publisher:
American Society for Microbiology
Country of Publication:
United States
Language:
English
Subject:
59 BASIC BIOLOGICAL SCIENCES; Vibrio cholerae; apoptosis; cell biology; cytotoxins; macrophages; pore-forming toxins; three-dimensional structure

Citation Formats

Herrera, Alfa, Kim, Youngchang, Chen, Jiexi, Jedrzejczak, Robert, Shukla, Shantanu, Maltseva, Natalia, Joachimiak, Grazyna, Welk, Lukas, Wiersum, Grant, Jaroszewski, Lukasz, Godzik, Adam, Joachimiak, Andrzej, and Satchell, Karla F. A Genomic Island of Vibrio cholerae Encodes a Three-Component Cytotoxin with Monomer and Protomer Forms Structurally Similar to Alpha-Pore-Forming Toxins. United States: N. p., 2022. Web. doi:10.1128/jb.00555-21.
Herrera, Alfa, Kim, Youngchang, Chen, Jiexi, Jedrzejczak, Robert, Shukla, Shantanu, Maltseva, Natalia, Joachimiak, Grazyna, Welk, Lukas, Wiersum, Grant, Jaroszewski, Lukasz, Godzik, Adam, Joachimiak, Andrzej, & Satchell, Karla F. A Genomic Island of Vibrio cholerae Encodes a Three-Component Cytotoxin with Monomer and Protomer Forms Structurally Similar to Alpha-Pore-Forming Toxins. United States. https://doi.org/10.1128/jb.00555-21
Herrera, Alfa, Kim, Youngchang, Chen, Jiexi, Jedrzejczak, Robert, Shukla, Shantanu, Maltseva, Natalia, Joachimiak, Grazyna, Welk, Lukas, Wiersum, Grant, Jaroszewski, Lukasz, Godzik, Adam, Joachimiak, Andrzej, and Satchell, Karla F. Mon . "A Genomic Island of Vibrio cholerae Encodes a Three-Component Cytotoxin with Monomer and Protomer Forms Structurally Similar to Alpha-Pore-Forming Toxins". United States. https://doi.org/10.1128/jb.00555-21. https://www.osti.gov/servlets/purl/1909700.
@article{osti_1909700,
title = {A Genomic Island of Vibrio cholerae Encodes a Three-Component Cytotoxin with Monomer and Protomer Forms Structurally Similar to Alpha-Pore-Forming Toxins},
author = {Herrera, Alfa and Kim, Youngchang and Chen, Jiexi and Jedrzejczak, Robert and Shukla, Shantanu and Maltseva, Natalia and Joachimiak, Grazyna and Welk, Lukas and Wiersum, Grant and Jaroszewski, Lukasz and Godzik, Adam and Joachimiak, Andrzej and Satchell, Karla F.},
abstractNote = {Alpha-pore-forming toxins (α-PFTs) are secreted by many species of bacteria, including Escherichia coli, Aeromonas hydrophila, and Bacillus thuringiensis, as part of their arsenal of virulence factors, and are often cytotoxic. In particular, for α-PFTs, the membrane-spanning channel they form is composed of hydrophobic α-helices. These toxins oligomerize at the surface of target cells and transition from a soluble to a protomer state in which they expose their hydrophobic regions and insert into the membrane to form a pore. The pores may be composed of homooligomers of one component or heterooligomers with two or three components, resulting in bi- or tripartite toxins. The multicomponent α-PFTs are often expressed from a single operon. Recently, motility-associated killing factor A (MakA), an α-PFT, was discovered in Vibrio cholerae. We report that makA is found on the V. cholerae GI-10 genomic island within an operon containing genes for two other potential α-PFTs, MakB and MakE. We determined the X-ray crystal structures for MakA, MakB, and MakE and demonstrated that all three are structurally related to the α-PFT family in the soluble state, and we modeled their protomer state based on the α-PFT AhlB from A. hydrophila. We found that MakA alone is cytotoxic at micromolar concentrations. However, combining MakA with MakB and MakE is cytotoxic at nanomolar concentrations, with specificity for J774 macrophage cells. Our data suggest that MakA, -B, and -E are α-PFTs that potentially act as a tripartite pore-forming toxin with specificity for phagocytic cells. The bacterium Vibrio cholerae causes gastrointestinal, wound, and skin infections. The motility-associated killing factor A (MakA) was recently shown to be cytotoxic against colon, prostate, and other cancer cells. However, at the outset of this study, the capacity of MakA to damage cells in combination with other Mak proteins encoded in the same operon had not been elucidated. We determined the structures of three Mak proteins and established that they are structurally related to the α-PFTs. Compared to MakA alone, the combination of all three toxins was more potent specifically in mouse macrophages. This study highlights the idea that the Mak toxins are selectively cytotoxic and thus may function as a tripartite toxin with cell type specificity.},
doi = {10.1128/jb.00555-21},
journal = {Journal of Bacteriology},
number = 5,
volume = 204,
place = {United States},
year = {Mon Apr 18 00:00:00 EDT 2022},
month = {Mon Apr 18 00:00:00 EDT 2022}
}

Works referenced in this record:

A Family of LIC Vectors for High-Throughput Cloning and Purification of Proteins
book, January 2009


VCGIDB: A Database and Web Resource for the Genomic Islands from Vibrio cholerae
journal, November 2019


New LIC vectors for production of proteins from genes containing rare codons
journal, September 2013

  • Eschenfeldt, William H.; Makowska-Grzyska, Magdalena; Stols, Lucy
  • Journal of Structural and Functional Genomics, Vol. 14, Issue 4
  • DOI: 10.1007/s10969-013-9163-9

Tripartite Hemolysin BL from Bacillus cereus
journal, January 1997

  • Beecher, Douglas J.; Wong, AmyC. L.
  • Journal of Biological Chemistry, Vol. 272, Issue 1
  • DOI: 10.1074/jbc.272.1.233

Membrane insertion of α-xenorhabdolysin in near-atomic detail
journal, July 2018


Protein-lipid interaction at low pH induces oligomerization of the MakA cytotoxin from Vibrio cholerae
journal, February 2022


Interpersonal Gut Microbiome Variation Drives Susceptibility and Resistance to Cholera Infection
journal, June 2020


Structure and mechanism of the two-component α-helical pore-forming toxin YaxAB
journal, May 2018


HKL -3000: the integration of data reduction and structure solution – from diffraction images to an initial model in minutes
journal, July 2006

  • Minor, Wladek; Cymborowski, Marcin; Otwinowski, Zbyszek
  • Acta Crystallographica Section D Biological Crystallography, Vol. 62, Issue 8
  • DOI: 10.1107/S0907444906019949

Flagella-mediated secretion of a novel Vibrio cholerae cytotoxin affecting both vertebrate and invertebrate hosts
journal, June 2018


X-ray crystal structure of the B component of Hemolysin BL fromBacillus cereus
journal, January 2008

  • Madegowda, Mahendra; Eswaramoorthy, Subramaniam; Burley, Stephen K.
  • Proteins: Structure, Function, and Bioinformatics, Vol. 71, Issue 2
  • DOI: 10.1002/prot.21888

Coot model-building tools for molecular graphics
journal, November 2004

  • Emsley, Paul; Cowtan, Kevin
  • Acta Crystallographica Section D Biological Crystallography, Vol. 60, Issue 12, p. 2126-2132
  • DOI: 10.1107/S0907444904019158

Ligation-independent cloning of PCR products (LIC-PCR)
journal, January 1990

  • Aslanidis, Charalampos; de Jong, Pieter J.
  • Nucleic Acids Research, Vol. 18, Issue 20
  • DOI: 10.1093/nar/18.20.6069

A multicomponent toxin from Bacillus cereus incites inflammation and shapes host outcome via the NLRP3 inflammasome
journal, December 2018


Improved side-chain torsion potentials for the Amber ff99SB protein force field
journal, January 2010

  • Lindorff-Larsen, Kresten; Piana, Stefano; Palmo, Kim
  • Proteins: Structure, Function, and Bioinformatics
  • DOI: 10.1002/prot.22711

Vibrio cholerae cytotoxin MakA induces noncanonical autophagy resulting in the spatial inhibition of canonical autophagy
journal, January 2020

  • Corkery, Dale P.; Nadeem, Aftab; Aung, Kyaw Min
  • Journal of Cell Science
  • DOI: 10.1242/jcs.252015

PHENIX: a comprehensive Python-based system for macromolecular structure solution
journal, January 2010

  • Adams, Paul D.; Afonine, Pavel V.; Bunkóczi, Gábor
  • Acta Crystallographica Section D Biological Crystallography, Vol. 66, Issue 2, p. 213-221
  • DOI: 10.1107/S0907444909052925

The assembly dynamics of the cytolytic pore toxin ClyA
journal, February 2015

  • Benke, Stephan; Roderer, Daniel; Wunderlich, Bengt
  • Nature Communications, Vol. 6, Issue 1
  • DOI: 10.1038/ncomms7198

PROCHECK: a program to check the stereochemical quality of protein structures
journal, April 1993

  • Laskowski, R. A.; MacArthur, M. W.; Moss, D. S.
  • Journal of Applied Crystallography, Vol. 26, Issue 2
  • DOI: 10.1107/S0021889892009944

A tripartite cytolytic toxin formed by Vibrio cholerae proteins with flagellum-facilitated secretion
journal, November 2021

  • Nadeem, Aftab; Nagampalli, Raghavendra; Toh, Eric
  • Proceedings of the National Academy of Sciences, Vol. 118, Issue 47
  • DOI: 10.1073/pnas.2111418118

Comparative genomics reveals mechanism for short-term and long-term clonal transitions in pandemic Vibrio cholerae
journal, August 2009

  • Chun, J.; Grim, C. J.; Hasan, N. A.
  • Proceedings of the National Academy of Sciences, Vol. 106, Issue 36
  • DOI: 10.1073/pnas.0907787106

The Crystal Structure of Bacillus cereus HblL1
journal, March 2021

  • Worthy, Harley L.; Williamson, Lainey J.; Auhim, Husam Sabah
  • Toxins, Vol. 13, Issue 4
  • DOI: 10.3390/toxins13040253

High-throughput protein purification and quality assessment for crystallization
journal, September 2011


GROMACS 4.5: a high-throughput and highly parallel open source molecular simulation toolkit
journal, February 2013


The pesticidal Cry6Aa toxin from Bacillus thuringiensis is structurally similar to HlyE-family alpha pore-forming toxins
journal, August 2016


Identification and structural analysis of the tripartite α-pore forming toxin of Aeromonas hydrophila
journal, July 2019

  • Wilson, Jason S.; Churchill-Angus, Alicia M.; Davies, Simon P.
  • Nature Communications, Vol. 10, Issue 1
  • DOI: 10.1038/s41467-019-10777-x

An expression vector tailored for large-scale, high-throughput purification of recombinant proteins
journal, June 2006

  • Donnelly, Mark I.; Zhou, Min; Millard, Cynthia Sanville
  • Protein Expression and Purification, Vol. 47, Issue 2
  • DOI: 10.1016/j.pep.2005.12.011

Characterisation of a tripartite α-pore forming toxin from Serratia marcescens
journal, March 2021

  • Churchill-Angus, Alicia M.; Schofield, Thomas H. B.; Marlow, Thomas R.
  • Scientific Reports, Vol. 11, Issue 1
  • DOI: 10.1038/s41598-021-85726-0

Structure of the NheA Component of the Nhe Toxin from Bacillus cereus: Implications for Function
journal, September 2013


Structural and Mechanistic Features of ClyA-Like α-Pore-Forming Toxins
journal, August 2018


Phosphatidic acid-mediated binding and mammalian cell internalization of the Vibrio cholerae cytotoxin MakA
journal, March 2021


Production of selenomethionine-labeled proteins in two-liter plastic bottles for structure determination
journal, March 2004


Quorum Sensing Negatively Regulates Hemolysin Transcriptionally and Posttranslationally in Vibrio cholerae
journal, January 2010


Genetic and Phenotypic Diversity of Quorum-Sensing Systems in Clinical and Environmental Isolates of Vibrio cholerae
journal, February 2006


Assembly mechanism of the α-pore–forming toxin cytolysin A from Escherichia coli
journal, June 2017

  • Roderer, Daniel; Glockshuber, Rudi
  • Philosophical Transactions of the Royal Society B: Biological Sciences, Vol. 372, Issue 1726
  • DOI: 10.1098/rstb.2016.0211

Infectious diarrhea: Cellular and molecular mechanisms
journal, January 2010