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Title: Complete genome sequence of Arcanobacterium haemolyticum type strain (11018T)

Abstract

Arcanobacterium haemolyticum (ex MacLean et al. 1946) Collins et al. 1983 is the type species of the genus Arcanobacterium, which belongs to the family Actinomycetaceae. The strain is of interest because it is an obligate parasite of the pharynx of humans and farm animal; occasionally, it causes pharyngeal or skin lesions. It is a Gram-positive, nonmotile and non-sporulating bacterium. The strain described in this study was isolated from infections amongst American soldiers of certain islands of the North and West Pacific. This is the first completed sequence of a member of the genus Arcanobacterium and the ninth type strain genome from the family Actinomycetaceae. The 1,986,154 bp long genome with its 1,821 protein-coding and 64 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.

Authors:
 [1];  [2];  [3];  [3];  [3];  [3];  [3];  [3];  [2];  [2];  [2];  [2];  [2];  [3];  [3];  [3];  [3];  [3];  [3];  [4] more »;  [4];  [5];  [5];  [5];  [5];  [1];  [6];  [6];  [6];  [3];  [3];  [7];  [4];  [3];  [3];  [6] « less
+ Show Author Affiliations
  1. Helmholtz Centre for Infection Research, Braunschweig (Germany)
  2. USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States); Los Alamos National Lab. (LANL), Los Alamos, NM (United States)
  3. USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States)
  4. Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
  5. USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States); Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States)
  6. German Collection of Microorganisms and Cell Cultures, Braunschweig (Germany)
  7. USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States); Univ. of California, Davis, CA (United States)
Publication Date:
Research Org.:
Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)
Sponsoring Org.:
USDOE Office of Science (SC), Biological and Environmental Research (BER); German Research Foundation (DFG)
OSTI Identifier:
1630535
Grant/Contract Number:  
AC02-05CH11231; AC52-07NA27344; AC02-06NA25396; AC05-00OR22725; INST 599/1-1; SI 1352/1-2
Resource Type:
Accepted Manuscript
Journal Name:
Standards in Genomic Sciences
Additional Journal Information:
Journal Volume: 3; Journal Issue: 2; Journal ID: ISSN 1944-3277
Publisher:
BioMed Central
Country of Publication:
United States
Language:
English
Subject:
59 BASIC BIOLOGICAL SCIENCES; obligate parasite; human pathogen; pharyngeal lesions; skin lesions; facultative anaerove; Actinomycetacaea; Actinobaceria; GEBA

Citation Formats

Yasawong, Montri, Teshima, Hazuki, Lapidus, Alla, Nolan, Matt, Lucas, Susan, Glavina Del Rio, Tijana, Tice, Hope, Cheng, Jan-Fang, Bruce, David, Detter, Chris, Tapia, Roxanne, Han, Cliff, Goodwin, Lynne, Pitluck, Sam, Liolios, Konstantinos, Ivanova, Natalia, Mavromatis, Konstantinos, Mikhailova, Natalia, Pati, Amrita, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia D., Rohde, Manfred, Sikorski, Johannes, Pukall, Rüdiger, Göker, Markus, Woyke, Tanja, Bristow, James, Eisen, Jonathan A., Markowitz, Victor, Hugenholtz, Philip, Kyrpides, Nikos C., and Klenk, Hans-Peter. Complete genome sequence of Arcanobacterium haemolyticum type strain (11018T). United States: N. p., 2010. Web. doi:10.4056/sigs.1123072.
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Yasawong, Montri, Teshima, Hazuki, Lapidus, Alla, Nolan, Matt, Lucas, Susan, Glavina Del Rio, Tijana, Tice, Hope, Cheng, Jan-Fang, Bruce, David, Detter, Chris, Tapia, Roxanne, Han, Cliff, Goodwin, Lynne, Pitluck, Sam, Liolios, Konstantinos, Ivanova, Natalia, Mavromatis, Konstantinos, Mikhailova, Natalia, Pati, Amrita, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia D., Rohde, Manfred, Sikorski, Johannes, Pukall, Rüdiger, Göker, Markus, Woyke, Tanja, Bristow, James, Eisen, Jonathan A., Markowitz, Victor, Hugenholtz, Philip, Kyrpides, Nikos C., & Klenk, Hans-Peter. Complete genome sequence of Arcanobacterium haemolyticum type strain (11018T). United States. https://doi.org/10.4056/sigs.1123072
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Yasawong, Montri, Teshima, Hazuki, Lapidus, Alla, Nolan, Matt, Lucas, Susan, Glavina Del Rio, Tijana, Tice, Hope, Cheng, Jan-Fang, Bruce, David, Detter, Chris, Tapia, Roxanne, Han, Cliff, Goodwin, Lynne, Pitluck, Sam, Liolios, Konstantinos, Ivanova, Natalia, Mavromatis, Konstantinos, Mikhailova, Natalia, Pati, Amrita, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia D., Rohde, Manfred, Sikorski, Johannes, Pukall, Rüdiger, Göker, Markus, Woyke, Tanja, Bristow, James, Eisen, Jonathan A., Markowitz, Victor, Hugenholtz, Philip, Kyrpides, Nikos C., and Klenk, Hans-Peter. Sun . "Complete genome sequence of Arcanobacterium haemolyticum type strain (11018T)". United States. https://doi.org/10.4056/sigs.1123072. https://www.osti.gov/servlets/purl/1630535.
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@article{osti_1630535,
title = {Complete genome sequence of Arcanobacterium haemolyticum type strain (11018T)},
author = {Yasawong, Montri and Teshima, Hazuki and Lapidus, Alla and Nolan, Matt and Lucas, Susan and Glavina Del Rio, Tijana and Tice, Hope and Cheng, Jan-Fang and Bruce, David and Detter, Chris and Tapia, Roxanne and Han, Cliff and Goodwin, Lynne and Pitluck, Sam and Liolios, Konstantinos and Ivanova, Natalia and Mavromatis, Konstantinos and Mikhailova, Natalia and Pati, Amrita and Chen, Amy and Palaniappan, Krishna and Land, Miriam and Hauser, Loren and Chang, Yun-Juan and Jeffries, Cynthia D. and Rohde, Manfred and Sikorski, Johannes and Pukall, Rüdiger and Göker, Markus and Woyke, Tanja and Bristow, James and Eisen, Jonathan A. and Markowitz, Victor and Hugenholtz, Philip and Kyrpides, Nikos C. and Klenk, Hans-Peter},
abstractNote = {Arcanobacterium haemolyticum (ex MacLean et al. 1946) Collins et al. 1983 is the type species of the genus Arcanobacterium, which belongs to the family Actinomycetaceae. The strain is of interest because it is an obligate parasite of the pharynx of humans and farm animal; occasionally, it causes pharyngeal or skin lesions. It is a Gram-positive, nonmotile and non-sporulating bacterium. The strain described in this study was isolated from infections amongst American soldiers of certain islands of the North and West Pacific. This is the first completed sequence of a member of the genus Arcanobacterium and the ninth type strain genome from the family Actinomycetaceae. The 1,986,154 bp long genome with its 1,821 protein-coding and 64 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.},
doi = {10.4056/sigs.1123072},
journal = {Standards in Genomic Sciences},
number = 2,
volume = 3,
place = {United States},
year = {Sun Oct 31 00:00:00 EDT 2010},
month = {Sun Oct 31 00:00:00 EDT 2010}
}
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Journal Article:
Free Publicly Available Full Text
Publisher's Version of Record
https://doi.org/10.4056/sigs.1123072
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Cited by: 5 works
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Figures / Tables:

Figure 1 Figure 1: Phylogenetic tree highlighting the position of A. haemolyticum strain 11018T relative to the type strains of the other species within the genus Arcanobacterium and to the type strains of the other genera within the family Actinomycetaceae. The trees were inferred from 1,388 aligned characters of the 16S rRNAmore » gene sequence under the maximum likelihood criterion and rooted in accordance with the current taxonomy. The branches are scaled in terms of the expected number of substitutions per site. Numbers above branches are support values from 1,000 bootstrap replicates if larger than 60%. Lineages with type strain genome sequencing projects registered in GOLD are shown in blue, published genomes in bold.« less
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    Works referencing / citing this record:

    Phenotypic and genotypic characteristics of Arcanobacterium haemolyticum isolated from clinical samples in a Danish hospital
    journal, February 2014

    • Sammra, Osama; Friis-Møller, Alice; Balbutskaya, Anna
    • Folia Microbiologica, Vol. 59, Issue 5
    • DOI: 10.1007/s12223-014-0308-4

    Phylogenomics and Evolutionary Dynamics of the Family Actinomycetaceae
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    • Zhao, Kelei; Li, Wujiao; Kang, Chunlan
    • Genome Biology and Evolution, Vol. 6, Issue 10
    • DOI: 10.1093/gbe/evu211

    Phylogenetic Framework and Molecular Signatures for the Main Clades of the Phylum Actinobacteria
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    • Gao, B.; Gupta, R. S.
    • Microbiology and Molecular Biology Reviews, Vol. 76, Issue 1
    • DOI: 10.1128/mmbr.05011-11

    Arcanolysin is a cholesterol-dependent cytolysin of the human pathogen Arcanobacterium haemolyticum
    journal, January 2011

    • Jost, B. Helen; Lucas, Erynn A.; Billington, Stephen J.
    • BMC Microbiology, Vol. 11, Issue 1
    • DOI: 10.1186/1471-2180-11-239
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