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Title: Complete genome sequence of Intrasporangium calvum type strain (7 KIPT)

Abstract

Intrasporangium calvum Kalakoutskii et al. 1967 is the type species of the genus Intrasporangium, which belongs to the actinobacterial family Intrasporangiaceae. The species is a Gram-positive bacterium that forms a branching mycelium, which tends to break into irregular fragments. The mycelium of this strain may bear intercalary vesicles but does not contain spores. The strain described in this study is an airborne organism that was isolated from a school dining room in 1967. One particularly interesting feature of I. calvum is that the type of its menaquinone is different from all other representatives of the family Intrasporangiaceae. This is the first completed genome sequence from a member of the genus Intrasporangium and also the first sequence from the family Intrasporangiaceae. The 4,024,382 bp long genome with its 3,653 protein-coding and 57 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.

Authors:
 [1];  [2];  [3];  [1];  [1];  [1];  [2];  [2];  [2];  [2];  [1];  [1];  [1];  [1];  [1];  [4];  [4];  [5];  [5];  [5] more »;  [5];  [3];  [6];  [6];  [6];  [1];  [1];  [7];  [4];  [1];  [1];  [6];  [1] « less
+ Show Author Affiliations
  1. USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States)
  2. USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States); Los Alamos National Lab. (LANL), Los Alamos, NM (United States)
  3. Helmholtz Centre for Infection Research, Braunschweig (Germany)
  4. Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
  5. USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States); Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States)
  6. German Collection of Microorganisms and Cell Cultures, Braunschweig (Germany)
  7. USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States); Univ. of California, Davis, CA (United States)
Publication Date:
Research Org.:
Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)
Sponsoring Org.:
USDOE Office of Science (SC), Biological and Environmental Research (BER); German Research Foundation (DFG)
OSTI Identifier:
1630544
Grant/Contract Number:  
AC02-05CH11231; AC52-07NA27344; AC02-06NA25396; AC05-00OR22725; INST 599/1-2; SI 1352/1-2
Resource Type:
Accepted Manuscript
Journal Name:
Standards in Genomic Sciences
Additional Journal Information:
Journal Volume: 3; Journal Issue: 3; Journal ID: ISSN 1944-3277
Publisher:
BioMed Central
Country of Publication:
United States
Language:
English
Subject:
59 BASIC BIOLOGICAL SCIENCES; airborne; Gram-positive; non-motile; intercalary vesicles; nocardioform; Actinobacteria; Intrasporangiaceae; GEBA

Citation Formats

Glavina Del Rio, Tijana, Chertkov, Olga, Yasawong, Montri, Lucas, Susan, Deshpande, Shweta, Cheng, Jan-Fang, Detter, Chris, Tapia, Roxanne, Han, Cliff, Goodwin, Lynne, Pitluck, Sam, Liolios, Konstantinos, Ivanova, Natalia, Mavromatis, Konstantinos, Pati, Amrita, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia D., Rohde, Manfred, Pukall, Rüdiger, Sikorski, Johannes, Göker, Markus, Woyke, Tanja, Bristow, James, Eisen, Jonathan A., Markowitz, Victor, Hugenholtz, Philip, Kyrpides, Nikos C., Klenk, Hans-Peter, and Lapidus, Alla. Complete genome sequence of Intrasporangium calvum type strain (7 KIPT). United States: N. p., 2010. Web. doi:10.4056/sigs.1263355.
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Glavina Del Rio, Tijana, Chertkov, Olga, Yasawong, Montri, Lucas, Susan, Deshpande, Shweta, Cheng, Jan-Fang, Detter, Chris, Tapia, Roxanne, Han, Cliff, Goodwin, Lynne, Pitluck, Sam, Liolios, Konstantinos, Ivanova, Natalia, Mavromatis, Konstantinos, Pati, Amrita, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia D., Rohde, Manfred, Pukall, Rüdiger, Sikorski, Johannes, Göker, Markus, Woyke, Tanja, Bristow, James, Eisen, Jonathan A., Markowitz, Victor, Hugenholtz, Philip, Kyrpides, Nikos C., Klenk, Hans-Peter, & Lapidus, Alla. Complete genome sequence of Intrasporangium calvum type strain (7 KIPT). United States. https://doi.org/10.4056/sigs.1263355
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Glavina Del Rio, Tijana, Chertkov, Olga, Yasawong, Montri, Lucas, Susan, Deshpande, Shweta, Cheng, Jan-Fang, Detter, Chris, Tapia, Roxanne, Han, Cliff, Goodwin, Lynne, Pitluck, Sam, Liolios, Konstantinos, Ivanova, Natalia, Mavromatis, Konstantinos, Pati, Amrita, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia D., Rohde, Manfred, Pukall, Rüdiger, Sikorski, Johannes, Göker, Markus, Woyke, Tanja, Bristow, James, Eisen, Jonathan A., Markowitz, Victor, Hugenholtz, Philip, Kyrpides, Nikos C., Klenk, Hans-Peter, and Lapidus, Alla. Fri . "Complete genome sequence of Intrasporangium calvum type strain (7 KIPT)". United States. https://doi.org/10.4056/sigs.1263355. https://www.osti.gov/servlets/purl/1630544.
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@article{osti_1630544,
title = {Complete genome sequence of Intrasporangium calvum type strain (7 KIPT)},
author = {Glavina Del Rio, Tijana and Chertkov, Olga and Yasawong, Montri and Lucas, Susan and Deshpande, Shweta and Cheng, Jan-Fang and Detter, Chris and Tapia, Roxanne and Han, Cliff and Goodwin, Lynne and Pitluck, Sam and Liolios, Konstantinos and Ivanova, Natalia and Mavromatis, Konstantinos and Pati, Amrita and Chen, Amy and Palaniappan, Krishna and Land, Miriam and Hauser, Loren and Chang, Yun-Juan and Jeffries, Cynthia D. and Rohde, Manfred and Pukall, Rüdiger and Sikorski, Johannes and Göker, Markus and Woyke, Tanja and Bristow, James and Eisen, Jonathan A. and Markowitz, Victor and Hugenholtz, Philip and Kyrpides, Nikos C. and Klenk, Hans-Peter and Lapidus, Alla},
abstractNote = {Intrasporangium calvum Kalakoutskii et al. 1967 is the type species of the genus Intrasporangium, which belongs to the actinobacterial family Intrasporangiaceae. The species is a Gram-positive bacterium that forms a branching mycelium, which tends to break into irregular fragments. The mycelium of this strain may bear intercalary vesicles but does not contain spores. The strain described in this study is an airborne organism that was isolated from a school dining room in 1967. One particularly interesting feature of I. calvum is that the type of its menaquinone is different from all other representatives of the family Intrasporangiaceae. This is the first completed genome sequence from a member of the genus Intrasporangium and also the first sequence from the family Intrasporangiaceae. The 4,024,382 bp long genome with its 3,653 protein-coding and 57 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.},
doi = {10.4056/sigs.1263355},
journal = {Standards in Genomic Sciences},
number = 3,
volume = 3,
place = {United States},
year = {Fri Dec 31 00:00:00 EST 2010},
month = {Fri Dec 31 00:00:00 EST 2010}
}
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Journal Article:
Free Publicly Available Full Text
Publisher's Version of Record
https://doi.org/10.4056/sigs.1263355
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Cited by: 3 works
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Figures / Tables:

Figure 1 Figure 1: Phylogenetic tree highlighting the position of I. calvum 7 KIPT relative to the type strains of the genera within the family Intrasporangiaceae. The trees were inferred from 1,406 aligned characters of the 16S rRNA gene sequence under the maximum likelihood criterion and rooted with the type strains ofmore » the genera within the family Kineosporiaceae. The branches are scaled in terms of the expected number of substitutions per site. Numbers above branches are support values from 650 bootstrap replicates if larger than 60%. Lineages with type strain genome sequencing projects registered in GOLD are shown in blue, published genomes in bold.« less
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    Works referencing / citing this record:

    A real-time multiplexed microbial growth intervalometer for capturing high resolution growth curves
    posted_content, January 2019

    • Vuono, David C.; Lipp, Bruce; Staub, Carl
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    Resource Concentration Modulates the Fate of Dissimilated Nitrogen in a Dual-Pathway Actinobacterium
    journal, January 2019

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