Kinetics of calcite precipitation by ureolytic bacteria under aerobic and anaerobic conditions
Abstract
The kinetics of urea hydrolysis (ureolysis) and induced calcium carbonate(CaCO3) precipitation for engineering use in the subsurface was investigated under aerobic conditions using Sporosarcina pasteurii (ATCC strain 11859) as well as Bacillus sphaericus strains 21776 and 21787. All bacterial strains showed ureolytic activity inducing CaCO3 precipitation aerobically. Rate constants not normalized to biomass demonstrated slightly higher-rate coefficients for both ureolysis (kurea) and CaCO3 precipitation (kprecip) for B. sphaericus 21776 (kurea=0.10±0.03 h-1, kprecip=0.60±0.34 h-1) compared to S. pasteurii (kurea=0.07±0.02 h-1, kprecip=0.25±0.02 h-1), though these differences were not statistically significantly different. B. sphaericus 21787 showed little ureolytic activity but was still capable of inducing some CaCO3 precipitation. Cell growth appeared to be inhibited during the period of CaCO3 precipitation. Transmission electron microscopy (TEM) images suggest this is due to the encasement of cells and was reflected in lower kurea values observed in the presence of dissolved Ca. However, biomass regrowth could be observed after CaCO3 precipitation ceased, which suggests that ureolysis-induced CaCO3 precipitation is not necessarily lethal for the entire population. The kinetics of ureolysis and CaCO3 precipitation with S. pasteurii was further analyzed under anaerobic conditions. Rate coefficients obtained in anaerobic environments were comparable to those under aerobic conditions; however, no cell growth was observed under anaerobic conditions with $$NO_3^-,SO_4^{2-}$$ or Fe3+ as potential terminal electron acceptors. These data suggest that the initial rates of ureolysis and ureolysis-induced CaCO3 precipitation are not significantly affected by the absence of oxygen but that long-term ureolytic activity might require the addition of suitable electron acceptors. Variations in the ureolytic capabilities and associated rates of CaCO3 precipitation between strains must be fully considered in subsurface engineering strategies that utilize microbial amendments.
- Authors:
-
- Aberystwyth Univ. (United Kingdom); Montana State Univ., Bozeman, MT (United States)
- Montana State Univ., Bozeman, MT (United States)
- Publication Date:
- Research Org.:
- Montana State Univ., Bozeman, MT (United States)
- Sponsoring Org.:
- USDOE Office of Fossil Energy (FE); European Union Marie-Curie Reintegration Grant; National Science Foundation (NSF)
- OSTI Identifier:
- 1614106
- Grant/Contract Number:
- FC26-04NT42262; FE0004478; FE0009599; FG02-08ER46527; FG02-09ER64758; 277005; DMS-0934696; W911NF0510255
- Resource Type:
- Accepted Manuscript
- Journal Name:
- Biogeosciences (Online)
- Additional Journal Information:
- Journal Name: Biogeosciences (Online); Journal Volume: 16; Journal Issue: 10; Journal ID: ISSN 1726-4189
- Publisher:
- European Geosciences Union
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 58 GEOSCIENCES; 59 BASIC BIOLOGICAL SCIENCES; environmental sciences & ecology; geology
Citation Formats
Mitchell, Andrew C., Espinosa-Ortiz, Erika J., Parks, Stacy L., Phillips, Adrienne J., Cunningham, Alfred B., and Gerlach, Robin. Kinetics of calcite precipitation by ureolytic bacteria under aerobic and anaerobic conditions. United States: N. p., 2019.
Web. doi:10.5194/bg-16-2147-2019.
Mitchell, Andrew C., Espinosa-Ortiz, Erika J., Parks, Stacy L., Phillips, Adrienne J., Cunningham, Alfred B., & Gerlach, Robin. Kinetics of calcite precipitation by ureolytic bacteria under aerobic and anaerobic conditions. United States. https://doi.org/10.5194/bg-16-2147-2019
Mitchell, Andrew C., Espinosa-Ortiz, Erika J., Parks, Stacy L., Phillips, Adrienne J., Cunningham, Alfred B., and Gerlach, Robin. Thu .
"Kinetics of calcite precipitation by ureolytic bacteria under aerobic and anaerobic conditions". United States. https://doi.org/10.5194/bg-16-2147-2019. https://www.osti.gov/servlets/purl/1614106.
@article{osti_1614106,
title = {Kinetics of calcite precipitation by ureolytic bacteria under aerobic and anaerobic conditions},
author = {Mitchell, Andrew C. and Espinosa-Ortiz, Erika J. and Parks, Stacy L. and Phillips, Adrienne J. and Cunningham, Alfred B. and Gerlach, Robin},
abstractNote = {The kinetics of urea hydrolysis (ureolysis) and induced calcium carbonate(CaCO3) precipitation for engineering use in the subsurface was investigated under aerobic conditions using Sporosarcina pasteurii (ATCC strain 11859) as well as Bacillus sphaericus strains 21776 and 21787. All bacterial strains showed ureolytic activity inducing CaCO3 precipitation aerobically. Rate constants not normalized to biomass demonstrated slightly higher-rate coefficients for both ureolysis (kurea) and CaCO3 precipitation (kprecip) for B. sphaericus 21776 (kurea=0.10±0.03 h-1, kprecip=0.60±0.34 h-1) compared to S. pasteurii (kurea=0.07±0.02 h-1, kprecip=0.25±0.02 h-1), though these differences were not statistically significantly different. B. sphaericus 21787 showed little ureolytic activity but was still capable of inducing some CaCO3 precipitation. Cell growth appeared to be inhibited during the period of CaCO3 precipitation. Transmission electron microscopy (TEM) images suggest this is due to the encasement of cells and was reflected in lower kurea values observed in the presence of dissolved Ca. However, biomass regrowth could be observed after CaCO3 precipitation ceased, which suggests that ureolysis-induced CaCO3 precipitation is not necessarily lethal for the entire population. The kinetics of ureolysis and CaCO3 precipitation with S. pasteurii was further analyzed under anaerobic conditions. Rate coefficients obtained in anaerobic environments were comparable to those under aerobic conditions; however, no cell growth was observed under anaerobic conditions with $NO_3^-,SO_4^{2-}$ or Fe3+ as potential terminal electron acceptors. These data suggest that the initial rates of ureolysis and ureolysis-induced CaCO3 precipitation are not significantly affected by the absence of oxygen but that long-term ureolytic activity might require the addition of suitable electron acceptors. Variations in the ureolytic capabilities and associated rates of CaCO3 precipitation between strains must be fully considered in subsurface engineering strategies that utilize microbial amendments.},
doi = {10.5194/bg-16-2147-2019},
journal = {Biogeosciences (Online)},
number = 10,
volume = 16,
place = {United States},
year = {Thu May 23 00:00:00 EDT 2019},
month = {Thu May 23 00:00:00 EDT 2019}
}
Web of Science
Works referenced in this record:
Imaging Biologically Induced Mineralization in Fully Hydrated Flow Systems
journal, August 2011
- Schultz, Logan; Pitts, Betsey; Mitchell, Andrew C.
- Microscopy Today, Vol. 19, Issue 5
Thermodynamics of aqueous urea solutions
journal, January 1967
- Stokes, Rh
- Australian Journal of Chemistry, Vol. 20, Issue 10
The crystal structure of urease from Klebsiella aerogenes
journal, May 1995
- Jabri, E.; Carr, M.; Hausinger, R.
- Science, Vol. 268, Issue 5213
Inhibition of Sporosarcina pasteurii under Anoxic Conditions: Implications for Subsurface Carbonate Precipitation and Remediation via Ureolysis
journal, July 2012
- Martin, Derek; Dodds, Kevin; Ngwenya, Bryne T.
- Environmental Science & Technology, Vol. 46, Issue 15
Microbially mediated plugging of porous media and the impact of differing injection strategies
journal, May 2012
- Tobler, Dominique J.; Maclachlan, Erica; Phoenix, Vernon R.
- Ecological Engineering, Vol. 42
Potential CO 2 Leakage Reduction through Biofilm-Induced Calcium Carbonate Precipitation
journal, August 2012
- Phillips, Adrienne J.; Lauchnor, Ellen; Eldring, Joachim (Joe)
- Environmental Science & Technology, Vol. 47, Issue 1
Influence of carbon sources and electron shuttles on ferric iron reduction by Cellulomonas sp. strain ES6
journal, February 2011
- Gerlach, Robin; Field, Erin K.; Viamajala, Sridhar
- Biodegradation, Vol. 22, Issue 5
Effects of environmental factors on microbial induced calcium carbonate precipitation: Environmental factors on MICP
journal, June 2011
- Mortensen, B. M.; Haber, M. J.; DeJong, J. T.
- Journal of Applied Microbiology, Vol. 111, Issue 2
Nitrification potential and urease activity in a mineral subsoil
journal, September 1998
- Swensen, Berit; Bakken, Lars R.
- Soil Biology and Biochemistry, Vol. 30, Issue 10-11
The Influence of Bacillus pasteurii on the Nucleation and Growth of Calcium Carbonate
journal, July 2006
- Mitchell, Andrew C.; Ferris, F. Grant
- Geomicrobiology Journal, Vol. 23, Issue 3-4
Bacteriogenic Mineral Plugging
journal, August 1996
- Ferris, F. G.; Stehmeier, L. G.; Kantzas, A.
- Journal of Canadian Petroleum Technology, Vol. 35, Issue 08
Darcy-scale modeling of microbially induced carbonate mineral precipitation in sand columns: MODELING MICP IN POROUS MEDIA
journal, July 2012
- Ebigbo, A.; Phillips, A.; Gerlach, R.
- Water Resources Research, Vol. 48, Issue 7
Formations of calcium carbonate minerals by bacteria and its multiple applications
journal, March 2016
- Anbu, Periasamy; Kang, Chang-Ho; Shin, Yu-Jin
- SpringerPlus, Vol. 5, Issue 1
Estimation of a biofilm-specific reaction rate: kinetics of bacterial urea hydrolysis in a biofilm
journal, September 2015
- Connolly, James M.; Jackson, Benjamin; Rothman, Adam P.
- npj Biofilms and Microbiomes, Vol. 1, Issue 1
Transport of Sporosarcina pasteurii in sandstone and its significance for subsurface engineering technologies
journal, March 2014
- Tobler, Dominique J.; Cuthbert, Mark O.; Phoenix, Vernon R.
- Applied Geochemistry, Vol. 42
Quantifying Biomediated Ground Improvement by Ureolysis: Large-Scale Biogrout Experiment
journal, December 2010
- van Paassen, Leon A.; Ghose, Ranajit; van der Linden, Thomas J. M.
- Journal of Geotechnical and Geoenvironmental Engineering, Vol. 136, Issue 12
A portion of the system calcium carbonate-carbon dioxide-water, with geological implications
journal, March 1952
- Miller, J. P.
- American Journal of Science, Vol. 250, Issue 3
Influence of Substrate Mineralogy on Bacterial Mineralization of Calcium Carbonate: Implications for Stone Conservation
journal, March 2012
- Rodriguez-Navarro, Carlos; Jroundi, Fadwa; Schiro, Mara
- Applied and Environmental Microbiology, Vol. 78, Issue 11
Comparison of rates of ureolysis between Sporosarcina pasteurii and an indigenous groundwater community under conditions required to precipitate large volumes of calcite
journal, June 2011
- Tobler, Dominique J.; Cuthbert, Mark O.; Greswell, Richard B.
- Geochimica et Cosmochimica Acta, Vol. 75, Issue 11
Strain-Specific Ureolytic Microbial Calcium Carbonate Precipitation
journal, August 2003
- Hammes, F.; Boon, N.; de Villiers, J.
- Applied and Environmental Microbiology, Vol. 69, Issue 8
Mineralization of bacterial surfaces
journal, October 1996
- Schultze-Lam, S.; Fortin, D.; Davis, B. S.
- Chemical Geology, Vol. 132, Issue 1-4
A Field and Modeling Study of Fractured Rock Permeability Reduction Using Microbially Induced Calcite Precipitation
journal, November 2013
- Cuthbert, Mark O.; McMillan, Lindsay A.; Handley-Sidhu, Stephanie
- Environmental Science & Technology, Vol. 47, Issue 23
Bio-deposition of a calcium carbonate layer on degraded limestone by Bacillus species
journal, February 2006
- Dick, Jan; De Windt, Wim; De Graef, Bernard
- Biodegradation, Vol. 17, Issue 4
Subscribed Content Calcium Carbonate Precipitation by Ureolytic Subsurface Bacteria
journal, October 2000
- Fujita, Y.; Ferris, F. G.; Lawson, R. D.
- Geomicrobiology Journal, Vol. 17, Issue 4
Microbially Enhanced Carbon Capture and Storage by Mineral-Trapping and Solubility-Trapping
journal, July 2010
- Mitchell, Andrew C.; Dideriksen, Knud; Spangler, Lee H.
- Environmental Science & Technology, Vol. 44, Issue 13
Controls on the rate of ureolysis and the morphology of carbonate precipitated by S. Pasteurii biofilms and limits due to bacterial encapsulation
journal, April 2012
- Cuthbert, Mark O.; Riley, Michael S.; Handley-Sidhu, Stephanie
- Ecological Engineering, Vol. 41
A novel approach to calcium removal from calcium-rich industrial wastewater
journal, February 2003
- Hammes, Frederik; Seka, Arsène; de Knijf, Stefaan
- Water Research, Vol. 37, Issue 3
Engineered applications of ureolytic biomineralization: a review
journal, July 2013
- Phillips, Adrienne J.; Gerlach, Robin; Lauchnor, Ellen
- Biofouling, Vol. 29, Issue 6
Microbiological precipitation of CaCO3
journal, October 1999
- Stocks-Fischer, Shannon; Galinat, Johnna K.; Bang, Sookie S.
- Soil Biology and Biochemistry, Vol. 31, Issue 11
Oxygen self-diffusion in calcite: Dependence on temperature and water fugacity
journal, February 1994
- Farver, John R.
- Earth and Planetary Science Letters, Vol. 121, Issue 3-4
Kinetics of calcite precipitation induced by ureolytic bacteria at 10 to 20°C in artificial groundwater
journal, April 2004
- Ferris, F. G.; Phoenix, V.; Fujita, Y.
- Geochimica et Cosmochimica Acta, Vol. 68, Issue 8
Whole cell kinetics of ureolysis by Sporosarcina pasteurii
journal, April 2015
- Lauchnor, E. G.; Topp, D. M.; Parker, A. E.
- Journal of Applied Microbiology, Vol. 118, Issue 6
Effect of Strontium Contaminants upon the Size and Solubility of Calcite Crystals Precipitated by the Bacterial Hydrolysis of Urea
journal, February 2006
- Mitchell, Andrew C.; Ferris, F. Grant
- Environmental Science & Technology, Vol. 40, Issue 3
Experimental and numerical modeling of bacterially induced pH increase and calcite precipitation in saline aquifers
journal, July 2009
- Dupraz, Sébastien; Parmentier, Marc; Ménez, Bénédicte
- Chemical Geology, Vol. 265, Issue 1-2
The coprecipitation of Sr into calcite precipitates induced by bacterial ureolysis in artificial groundwater: Temperature and kinetic dependence
journal, September 2005
- Mitchell, Andrew C.; Ferris, F. Grant
- Geochimica et Cosmochimica Acta, Vol. 69, Issue 17
Kinetics of calcite growth: surface processes and relationships to macroscopic rate laws
journal, July 2000
- Teng, H. Henry; Dove, Patricia M.; De Yoreo, James J.
- Geochimica et Cosmochimica Acta, Vol. 64, Issue 13
Bacteriogenic Mineral Plugging
journal, September 1997
- Ferris, F. G.; Stehmeier, L. G.; Kantzas, A.
- Journal of Canadian Petroleum Technology, Vol. 36, Issue 09
Bacteriogenic Mineral Plugging
conference, April 2013
- Ferris, F. G.; Stehmeler, L. G.; Kantzas, A.
- Technical Meeting / Petroleum Conference of The South Saskatchewan Section
Data from: Kinetics of calcite precipitation by ureolytic bacteria under aerobic and anaerobic conditions
dataset, January 2019
- Mitchell, Andrew C.; Espinosa-Ortiz, Erika J.; Parks, Stacy L.
- Dryad
Data from: Kinetics of calcite precipitation by ureolytic bacteria under aerobic and anaerobic conditions
dataset, January 2019
- Mitchell, Andrew C.; Espinosa-Ortiz, Erika J.; Parks, Stacy L.
- Dryad
Works referencing / citing this record:
Data from: Kinetics of calcite precipitation by ureolytic bacteria under aerobic and anaerobic conditions
dataset, January 2019
- Mitchell, Andrew C.; Espinosa-Ortiz, Erika J.; Parks, Stacy L.
- Dryad
Data from: Kinetics of calcite precipitation by ureolytic bacteria under aerobic and anaerobic conditions
dataset, January 2019
- Mitchell, Andrew C.; Espinosa-Ortiz, Erika J.; Parks, Stacy L.
- Dryad