Rational Control of Calcium Carbonate Precipitation by Engineered Escherichia coli
Abstract
Ureolytic bacteria (e.g., Sporosarcina pasteurii) can produce calcium carbonate (CaCO3). Tailoring the size and shape of biogenic CaCO3 may increase the range of useful applications for these crystals. However, wild type Sporosarcina pasteurii is difficult to genetically engineer, limiting control of the organism and its crystal precipitates. Therefore, we designed, constructed, and compared different urease operons and expression levels for CaCO3 production in engineered Escherichia coli strains. We quantified urease expression and calcium uptake and characterized CaCO3 crystal phase and morphology for 13 engineered strains. There was a weak relationship between urease expression and crystal size, suggesting that genes surrounding the urease gene cluster affect crystal size. However, when evaluating strains with a wider range of urease expression levels, there was a negative relationship between urease activity and polycrystal size (e.g., larger crystals with lower activity). The resulting range of crystal morphologies created by the rationally designed strains demonstrates the potential for controlling biogenic CaCO3 precipitation.
- Authors:
-
- Renewable and Sustainable Energy Inst. (RASEI), Boulder, CO (United States)
- Univ. of Colorado, Boulder, CO (United States). Dept. of Civil, Environmental, and Architectural Engineering
- Renewable and Sustainable Energy Inst. (RASEI), Boulder, CO (United States); Univ. of Colorado, Boulder, CO (United States). Dept. of Chemical and Biological Engineering
- Renewable and Sustainable Energy Inst. (RASEI), Boulder, CO (United States); National Renewable Energy Lab. (NREL), Golden, CO (United States); Univ. of Colorado, Boulder, CO (United States). Dept. of Chemistry and Biochemistry
- Publication Date:
- Research Org.:
- National Renewable Energy Laboratory (NREL), Golden, CO (United States)
- Sponsoring Org.:
- U.S. Department of Defense (DOD), Defense Advanced Research Projects Agency
- OSTI Identifier:
- 1484428
- Report Number(s):
- NREL/JA-2700-72870
Journal ID: ISSN 2161-5063
- Grant/Contract Number:
- AC36-08GO28308
- Resource Type:
- Accepted Manuscript
- Journal Name:
- ACS Synthetic Biology
- Additional Journal Information:
- Journal Volume: 7; Journal Issue: 11; Journal ID: ISSN 2161-5063
- Publisher:
- American Chemical Society (ACS)
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 59 BASIC BIOLOGICAL SCIENCES; 37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CHEMISTRY; CaCO3 precipitation; Escherichia coli; MICP; rational control; urease
Citation Formats
Liang, Liya, Heveran, Chelsea, Liu, Rongming, Gill, Ryan T., Nagarajan, Aparna, Cameron, Jeffrey, Hubler, Mija, Srubar, Wil V., and Cook, Sherri M. Rational Control of Calcium Carbonate Precipitation by Engineered Escherichia coli. United States: N. p., 2018.
Web. doi:10.1021/acssynbio.8b00194.
Liang, Liya, Heveran, Chelsea, Liu, Rongming, Gill, Ryan T., Nagarajan, Aparna, Cameron, Jeffrey, Hubler, Mija, Srubar, Wil V., & Cook, Sherri M. Rational Control of Calcium Carbonate Precipitation by Engineered Escherichia coli. United States. https://doi.org/10.1021/acssynbio.8b00194
Liang, Liya, Heveran, Chelsea, Liu, Rongming, Gill, Ryan T., Nagarajan, Aparna, Cameron, Jeffrey, Hubler, Mija, Srubar, Wil V., and Cook, Sherri M. Fri .
"Rational Control of Calcium Carbonate Precipitation by Engineered Escherichia coli". United States. https://doi.org/10.1021/acssynbio.8b00194. https://www.osti.gov/servlets/purl/1484428.
@article{osti_1484428,
title = {Rational Control of Calcium Carbonate Precipitation by Engineered Escherichia coli},
author = {Liang, Liya and Heveran, Chelsea and Liu, Rongming and Gill, Ryan T. and Nagarajan, Aparna and Cameron, Jeffrey and Hubler, Mija and Srubar, Wil V. and Cook, Sherri M.},
abstractNote = {Ureolytic bacteria (e.g., Sporosarcina pasteurii) can produce calcium carbonate (CaCO3). Tailoring the size and shape of biogenic CaCO3 may increase the range of useful applications for these crystals. However, wild type Sporosarcina pasteurii is difficult to genetically engineer, limiting control of the organism and its crystal precipitates. Therefore, we designed, constructed, and compared different urease operons and expression levels for CaCO3 production in engineered Escherichia coli strains. We quantified urease expression and calcium uptake and characterized CaCO3 crystal phase and morphology for 13 engineered strains. There was a weak relationship between urease expression and crystal size, suggesting that genes surrounding the urease gene cluster affect crystal size. However, when evaluating strains with a wider range of urease expression levels, there was a negative relationship between urease activity and polycrystal size (e.g., larger crystals with lower activity). The resulting range of crystal morphologies created by the rationally designed strains demonstrates the potential for controlling biogenic CaCO3 precipitation.},
doi = {10.1021/acssynbio.8b00194},
journal = {ACS Synthetic Biology},
number = 11,
volume = 7,
place = {United States},
year = {Fri Nov 02 00:00:00 EDT 2018},
month = {Fri Nov 02 00:00:00 EDT 2018}
}
Web of Science
Works referenced in this record:
Microbially Influenced Corrosion as a Model System for the Study of Metal Microbe Interactions: A Unifying Electron Transfer Hypothesis
journal, February 2003
- Hamilton, W. A.
- Biofouling, Vol. 19, Issue 1
Potential CO 2 Leakage Reduction through Biofilm-Induced Calcium Carbonate Precipitation
journal, August 2012
- Phillips, Adrienne J.; Lauchnor, Ellen; Eldring, Joachim (Joe)
- Environmental Science & Technology, Vol. 47, Issue 1
A Regulatory Cascade in the Induction of rhaBAD
journal, November 1993
- Egan, Susan M.; Schleif, Robert F.
- Journal of Molecular Biology, Vol. 234, Issue 1
Reducing the risk of well bore leakage of CO2 using engineered biomineralization barriers
journal, January 2011
- Cunningham, A. B.; Gerlach, R.; Spangler, L.
- Energy Procedia, Vol. 4
Urease activity in microbiologically-induced calcite precipitation
journal, February 2002
- Bachmeier, Keri L.; Williams, Amy E.; Warmington, John R.
- Journal of Biotechnology, Vol. 93, Issue 2
The Influence of Bacillus pasteurii on the Nucleation and Growth of Calcium Carbonate
journal, July 2006
- Mitchell, Andrew C.; Ferris, F. Grant
- Geomicrobiology Journal, Vol. 23, Issue 3-4
Composability of regulatory sequences controlling transcription and translation in Escherichia coli
journal, August 2013
- Kosuri, Sriram; Goodman, Daniel B.; Cambray, Guillaume
- Proceedings of the National Academy of Sciences, Vol. 110, Issue 34
Darcy-scale modeling of microbially induced carbonate mineral precipitation in sand columns: MODELING MICP IN POROUS MEDIA
journal, July 2012
- Ebigbo, A.; Phillips, A.; Gerlach, R.
- Water Resources Research, Vol. 48, Issue 7
DNA assembler, an in vivo genetic method for rapid construction of biochemical pathways
journal, December 2008
- Shao, Zengyi; Zhao, Hua; Zhao, Huimin
- Nucleic Acids Research, Vol. 37, Issue 2
Codon bias and heterologous protein expression
journal, July 2004
- Gustafsson, Claes; Govindarajan, Sridhar; Minshull, Jeremy
- Trends in Biotechnology, Vol. 22, Issue 7
Helicobacter pylori nickel-transport gene nixA: synthesis of catalytically active urease in Escherichia coli independent of growth conditions
journal, April 1995
- Mobley, Harry L. T.; Garner, Rachel M.; Bauerfeind, Peter
- Molecular Microbiology, Vol. 16, Issue 1
Key roles of pH and calcium metabolism in microbial carbonate precipitation
journal, March 2002
- Hammes, Frederik; Verstraete*, Willy
- Reviews in Environmental Science and Bio/Technology, Vol. 1, Issue 1
A set of recombineering plasmids for gram-negative bacteria
journal, September 2006
- Datta, Simanti; Costantino, Nina; Court, Donald L.
- Gene, Vol. 379, p. 109-115
Broad-host-range vectors for protein expression across gram negative hosts
journal, January 2010
- Prior, Jamie E.; Lynch, Michael D.; Gill, Ryan T.
- Biotechnology and Bioengineering, Vol. 106, Issue 2, p. 326-332
Urease from the soil bacterium Bacillus pasteurii: Immobilization on Ca-polygalacturonate
journal, June 1996
- Ciurli, S.; Marzadori, C.; Benini, S.
- Soil Biology and Biochemistry, Vol. 28, Issue 6
Raman spectroscopy of synthetic, geological and biological vaterite: a Raman spectroscopic study: Raman spectroscopy of synthetic, geological and biological vaterite
journal, September 2009
- Wehrmeister, U.; Soldati, A. L.; Jacob, D. E.
- Journal of Raman Spectroscopy, Vol. 41, Issue 2
Characterisation and expression analysis of a nitrate transporter and nitrite reductase genes, two members of a gene cluster for nitrate assimilation from the symbiotic basidiomycete Hebeloma cylindrosporum
journal, March 2003
- Jargeat, Patricia; Rekangalt, David; Verner, Marie-Christine
- Current Genetics, Vol. 43, Issue 3
Circular polymerase extension cloning for high-throughput cloning of complex and combinatorial DNA libraries
journal, February 2011
- Quan, Jiayuan; Tian, Jingdong
- Nature Protocols, Vol. 6, Issue 2
Biomineralization of calcium carbonates and their engineered applications: a review
journal, January 2013
- Dhami, Navdeep K.; Reddy, M. Sudhakara; Mukherjee, Abhijit
- Frontiers in Microbiology, Vol. 4
JCat: a novel tool to adapt codon usage of a target gene to its potential expression host
journal, July 2005
- Grote, A.; Hiller, K.; Scheer, M.
- Nucleic Acids Research, Vol. 33, Issue Web Server
A predictive biophysical model of translational coupling to coordinate and control protein expression in bacterial operons
journal, June 2015
- Tian, Tian; Salis, Howard M.
- Nucleic Acids Research, Vol. 43, Issue 14
Molecular biology of microbial ureases.
journal, January 1995
- Mobley, H. L.; Island, M. D.; Hausinger, R. P.
- Microbiological reviews, Vol. 59, Issue 3
Rapid and Efficient One-Step Metabolic Pathway Integration in E. coli
journal, April 2016
- Bassalo, Marcelo C.; Garst, Andrew D.; Halweg-Edwards, Andrea L.
- ACS Synthetic Biology, Vol. 5, Issue 7
Engineered applications of ureolytic biomineralization: a review
journal, July 2013
- Phillips, Adrienne J.; Gerlach, Robin; Lauchnor, Ellen
- Biofouling, Vol. 29, Issue 6
Application of calcifying bacteria for remediation of stones and cultural heritages
journal, June 2014
- Dhami, Navdeep Kaur; Reddy, M. Sudhakara; Mukherjee, Abhijit
- Frontiers in Microbiology, Vol. 5
Microbiological precipitation of CaCO3
journal, October 1999
- Stocks-Fischer, Shannon; Galinat, Johnna K.; Bang, Sookie S.
- Soil Biology and Biochemistry, Vol. 31, Issue 11
Calcite precipitation induced by polyurethane-immobilized Bacillus pasteurii
journal, March 2001
- Bang, Sookie S.; Galinat, Johnna K.; Ramakrishnan, V.
- Enzyme and Microbial Technology, Vol. 28, Issue 4-5
Molecular biology of microbial ureases
journal, September 1995
- Mobley, H. L.; Island, M. D.; Hausinger, R. P.
- Microbiological Reviews, Vol. 59, Issue 3
Mapping, cloning, expression, and sequencing of the rhaT gene, which encodes a novel L-rhamnose-H+ transport protein in Salmonella typhimurium and Escherichia coli.
journal, April 1992
- Tate, C. G.; Muiry, J. A.; Henderson, P. J.
- Journal of Biological Chemistry, Vol. 267, Issue 10
Works referencing / citing this record:
Metal and metalloid immobilization by microbiologically induced carbonates precipitation
journal, March 2019
- Tamayo-Figueroa, Diana P.; Castillo, Elianna; Brandão, Pedro F. B.
- World Journal of Microbiology and Biotechnology, Vol. 35, Issue 4
Engineered Ureolytic Microorganisms Can Tailor the Morphology and Nanomechanical Properties of Microbial-Precipitated Calcium Carbonate
journal, October 2019
- Heveran, Chelsea M.; Liang, Liya; Nagarajan, Aparna
- Scientific Reports, Vol. 9, Issue 1
Engineered Ureolytic Microorganisms Can Tailor the Morphology and Nanomechanical Properties of Microbial-Precipitated Calcium Carbonate
journal, October 2019
- Heveran, Chelsea M.; Liang, Liya; Nagarajan, Aparna
- Scientific Reports, Vol. 9, Issue 1