Regulatory Tools for Controlling Gene Expression in Cyanobacteria
Abstract
Cyanobacteria are attractive hosts for converting carbon dioxide and sunlight into desirable chemical products. To engineer these organisms and manipulate their metabolic pathways, the biotechnology community has developed genetic tools to control gene expression. Many native cyanobacterial promoters and related sequence elements have been used to regulate genes of interest, and heterologous tools that use non-native small molecules to induce gene expression have been demonstrated. Overall, IPTG-based induction systems seem to be leaky and initially demonstrate small dynamic ranges in cyanobacteria. Consequently, a variety of other induction systems have been optimized to enable tighter control of gene expression. Tools require significant optimization because they function quite differently in cyanobacteria when compared to analogous use in model heterotrophs. We hypothesize that these differences are due to fundamental differences in physiology between organisms. This review is not intended to summarize all known products made in cyanobacteria nor the performance (titer, rate, yield) of individual strains, but instead will focus on the genetic tools and the inherent aspects of cellular physiology that influence gene expression in cyanobacteria.
- Authors:
-
- Univ. of Wisconsin, Madison, WI (United States). Dept. of Chemical and Biological Engineering, and Microbiology Doctoral Training Program
- Publication Date:
- Research Org.:
- Univ. of Wisconsin, Madison, WI (United States)
- Sponsoring Org.:
- USDOE
- OSTI Identifier:
- 1515186
- Grant/Contract Number:
- SC0010329
- Resource Type:
- Accepted Manuscript
- Journal Name:
- Advances in Experimental Medicine and Biology
- Additional Journal Information:
- Journal Volume: 1080; Journal ID: ISSN 0065-2598
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 59 BASIC BIOLOGICAL SCIENCES; Promoter; Induction system; Termination; Genome editing
Citation Formats
Gordon, Gina C., and Pfleger, Brian F. Regulatory Tools for Controlling Gene Expression in Cyanobacteria. United States: N. p., 2018.
Web. doi:10.1007/978-981-13-0854-3_12.
Gordon, Gina C., & Pfleger, Brian F. Regulatory Tools for Controlling Gene Expression in Cyanobacteria. United States. https://doi.org/10.1007/978-981-13-0854-3_12
Gordon, Gina C., and Pfleger, Brian F. Thu .
"Regulatory Tools for Controlling Gene Expression in Cyanobacteria". United States. https://doi.org/10.1007/978-981-13-0854-3_12. https://www.osti.gov/servlets/purl/1515186.
@article{osti_1515186,
title = {Regulatory Tools for Controlling Gene Expression in Cyanobacteria},
author = {Gordon, Gina C. and Pfleger, Brian F.},
abstractNote = {Cyanobacteria are attractive hosts for converting carbon dioxide and sunlight into desirable chemical products. To engineer these organisms and manipulate their metabolic pathways, the biotechnology community has developed genetic tools to control gene expression. Many native cyanobacterial promoters and related sequence elements have been used to regulate genes of interest, and heterologous tools that use non-native small molecules to induce gene expression have been demonstrated. Overall, IPTG-based induction systems seem to be leaky and initially demonstrate small dynamic ranges in cyanobacteria. Consequently, a variety of other induction systems have been optimized to enable tighter control of gene expression. Tools require significant optimization because they function quite differently in cyanobacteria when compared to analogous use in model heterotrophs. We hypothesize that these differences are due to fundamental differences in physiology between organisms. This review is not intended to summarize all known products made in cyanobacteria nor the performance (titer, rate, yield) of individual strains, but instead will focus on the genetic tools and the inherent aspects of cellular physiology that influence gene expression in cyanobacteria.},
doi = {10.1007/978-981-13-0854-3_12},
journal = {Advances in Experimental Medicine and Biology},
number = ,
volume = 1080,
place = {United States},
year = {Thu Aug 09 00:00:00 EDT 2018},
month = {Thu Aug 09 00:00:00 EDT 2018}
}
Web of Science
Works referenced in this record:
Cpf1 Is A Versatile Tool for CRISPR Genome Editing Across Diverse Species of Cyanobacteria
journal, December 2016
- Ungerer, Justin; Pakrasi, Himadri B.
- Scientific Reports, Vol. 6, Issue 1
The stringent response regulates adaptation to darkness in the cyanobacterium Synechococcus elongatus
journal, August 2016
- Hood, Rachel D.; Higgins, Sean A.; Flamholz, Avi
- Proceedings of the National Academy of Sciences, Vol. 113, Issue 33
Transcriptional Regulation of the CO2-Concentrating Mechanism in a Euryhaline, Coastal Marine Cyanobacterium, Synechococcus sp. Strain PCC 7002: Role of NdhR/CcmR
journal, February 2007
- Woodger, F. J.; Bryant, D. A.; Price, G. D.
- Journal of Bacteriology, Vol. 189, Issue 9
Predictive design of mRNA translation initiation region to control prokaryotic translation efficiency
journal, January 2013
- Seo, Sang Woo; Yang, Jae-Seong; Kim, Inhae
- Metabolic Engineering, Vol. 15
Strong and regulated promoters in the cyanobacterium Anabaena PCC 7120
journal, December 1993
- Elhai, Jeff
- FEMS Microbiology Letters, Vol. 114, Issue 2
Short RNA half-lives in the slow-growing marine cyanobacterium Prochlorococcus
journal, January 2010
- Steglich, Claudia; Lindell, Debbie; Futschik, Matthias
- Genome Biology, Vol. 11, Issue 5
ORFs and Genes: How Strong a Connection?
journal, January 1995
- Fickett, James W.
- Journal of Computational Biology, Vol. 2, Issue 1
Transcription from bacteriophage pR promoter is regulated independently and antagonistically by DksA and ppGpp
journal, September 2009
- Lyzen, R.; Kochanowska, M.; Wegrzyn, G.
- Nucleic Acids Research, Vol. 37, Issue 20
The PedR transcriptional regulator interacts with thioredoxin to connect photosynthesis with gene expression in cyanobacteria
journal, September 2010
- Horiuchi, Mayumi; Nakamura, Kinu; Kojima, Kouji
- Biochemical Journal, Vol. 431, Issue 1
Synechocystis sp. PCC 6803 — a useful tool in the study of the genetics of cyanobacteria
journal, January 2001
- Ikeuchi, Masahiko; Tabata, Satoshi
- Photosynthesis Research, Vol. 70, Issue 1, p. 73-83
Transformation in Agmenellum quadruplicatum
journal, October 1980
- Stevens, S. E.; Porter, R. D.
- Proceedings of the National Academy of Sciences, Vol. 77, Issue 10
Activation of the Anabaena nir operon promoter requires both NtcA (CAP family) and NtcB (LysR family) transcription factors
journal, November 2000
- Frías, José E.; Flores, Enrique; Herrero, Antonia
- Molecular Microbiology, Vol. 38, Issue 3
Efficient Gene Induction and Endogenous Gene Repression Systems for the Filamentous Cyanobacterium Anabaena sp. PCC 7120
journal, December 2015
- Higo, Akiyoshi; Isu, Atsuko; Fukaya, Yuki
- Plant and Cell Physiology, Vol. 57, Issue 2
Transcription termination and anti-termination in E. coli: Transcription termination in E. coli
journal, August 2002
- Nudler, Evgeny; Gottesman, Max E.
- Genes to Cells, Vol. 7, Issue 8
An Organic Acid Based Counter Selection System for Cyanobacteria
journal, October 2013
- Begemann, Matthew B.; Zess, Erin K.; Walters, Eric M.
- PLoS ONE, Vol. 8, Issue 10
Abundance and distribution of the highly iterated palindrome 1 (HIP1) among prokaryotes
journal, September 2011
- Delaye, Luis; Moya, Andrés
- Mobile Genetic Elements, Vol. 1, Issue 3
Engineering a synthetic pathway in cyanobacteria for isopropanol production directly from carbon dioxide and light
journal, November 2013
- Kusakabe, Tamami; Tatsuke, Tsuneyuki; Tsuruno, Keigo
- Metabolic Engineering, Vol. 20
CRISPR-Cas9 for the genome engineering of cyanobacteria and succinate production
journal, November 2016
- Li, Hung; Shen, Claire R.; Huang, Chun-Hung
- Metabolic Engineering, Vol. 38
HIP1 propagates in cyanobacterial DNA via nucleotide substitutions but promotes excision at similar frequencies in Escherichia coli and Synechococcus PCC 7942
journal, April 1997
- Robinson, Pamela J.; Cranenburgh, Rocky M.; Head, Ian M.
- Molecular Microbiology, Vol. 24, Issue 1
RNase E and RNase J are needed for S-adenosylmethionine homeostasis in Sinorhizobium meliloti
journal, April 2017
- Baumgardt, Kathrin; Melior, Hendrik; Madhugiri, Ramakanth
- Microbiology, Vol. 163, Issue 4
phrA, the major photoreactivating factor in the cyanobacterium Synechocystis sp. strain PCC 6803 codes for a cyclobutane-pyrimidine-dimer-specific DNA photolyase
journal, May 2000
- Ng, Wing-On; Zentella, Rodolfo; Wang, Yinsheng
- Archives of Microbiology, Vol. 173, Issue 5-6
Transformation and Conjugal Transfer of Foreign Genes into the Filamentous Multicellular Cyanobacteria (Subsection V) Fischerella and Chlorogloeopsis
journal, July 2012
- Stucken, Karina; Ilhan, Judith; Roettger, Mayo
- Current Microbiology, Vol. 65, Issue 5
Rerouting Carbon Flux To Enhance Photosynthetic Productivity
journal, February 2012
- Ducat, Daniel C.; Avelar-Rivas, J. Abraham; Way, Jeffrey C.
- Applied and Environmental Microbiology, Vol. 78, Issue 8
Proteomic Analysis of a Highly Active Photosystem II Preparation from the Cyanobacterium Synechocystis sp. PCC 6803 Reveals the Presence of Novel Polypeptides
journal, May 2002
- Kashino, Yasuhiro; Lauber, Wendy M.; Carroll, James A.
- Biochemistry, Vol. 41, Issue 25
Engineering a Cyanobacterial Cell Factory for Production of Lactic Acid
journal, August 2012
- Angermayr, S. Andreas; Paszota, Michal; Hellingwerf, Klaas J.
- Applied and Environmental Microbiology, Vol. 78, Issue 19
A high resolution map of a cyanobacterial transcriptome
journal, January 2011
- Vijayan, Vikram; Jain, Isha H.; O'Shea, Erin K.
- Genome Biology, Vol. 12, Issue 5
Global RNA Half-Life Analysis in Escherichia coli Reveals Positional Patterns of Transcript Degradation
journal, January 2003
- Selinger, D. W.
- Genome Research, Vol. 13, Issue 2
Use of a conditionally lethal gene in Anabaena sp. strain PCC 7120 to select for double recombinants and to entrap insertion sequences.
journal, June 1990
- Cai, Y. P.; Wolk, C. P.
- Journal of Bacteriology, Vol. 172, Issue 6
Insertional mutagenesis by random cloning of antibiotic resistance genes into the genome of the cyanobacterium Synechocystis strain PCC 6803.
journal, June 1989
- Labarre, J.; Chauvat, F.; Thuriaux, P.
- Journal of Bacteriology, Vol. 171, Issue 6
Circadian gating of cell division in cyanobacteria growing with average doubling times of less than 24 hours.
journal, September 1996
- Mori, T.; Binder, B.; Johnson, C. H.
- Proceedings of the National Academy of Sciences, Vol. 93, Issue 19
Enzymatic assembly of DNA molecules up to several hundred kilobases
journal, April 2009
- Gibson, Daniel G.; Young, Lei; Chuang, Ray-Yuan
- Nature Methods, Vol. 6, Issue 5, p. 343-345
CRISPR interference as a titratable, trans-acting regulatory tool for metabolic engineering in the cyanobacterium Synechococcus sp. strain PCC 7002
journal, November 2016
- Gordon, Gina C.; Korosh, Travis C.; Cameron, Jeffrey C.
- Metabolic Engineering, Vol. 38
A single vector-based strategy for marker-less gene replacement in Synechocystis sp. PCC 6803
journal, January 2014
- Viola, Stefania; Rühle, Thilo; Leister, Dario
- Microbial Cell Factories, Vol. 13, Issue 1
Global analysis of mRNA stability in Mycobacterium tuberculosis
journal, November 2012
- Rustad, Tige R.; Minch, Kyle J.; Brabant, William
- Nucleic Acids Research, Vol. 41, Issue 1
Cyanobacterial conversion of carbon dioxide to 2,3-butanediol
journal, January 2013
- Oliver, John W. K.; Machado, Iara M. P.; Yoneda, Hisanari
- Proceedings of the National Academy of Sciences, Vol. 110, Issue 4
Theophylline-Dependent Riboswitch as a Novel Genetic Tool for Strict Regulation of Protein Expression in Cyanobacterium Synechococcus elongatus PCC 7942
journal, September 2013
- Nakahira, Yoichi; Ogawa, Atsushi; Asano, Hiroyuki
- Plant and Cell Physiology, Vol. 54, Issue 10
The Transition between Transcriptional Initiation and Elongation in E. coli Is Highly Variable and Often Rate Limiting
journal, December 2006
- Reppas, Nikos B.; Wade, Joseph T.; Church, George M.
- Molecular Cell, Vol. 24, Issue 5
Ribonuclease E is a 5′-end-dependent endonuclease
journal, October 1998
- Mackie, George A.
- Nature, Vol. 395, Issue 6703
Ethylene Synthesis and Regulated Expression of Recombinant Protein in Synechocystis sp. PCC 6803
journal, November 2012
- Guerrero, Fernando; Carbonell, Verónica; Cossu, Matteo
- PLoS ONE, Vol. 7, Issue 11
Predictive combinatorial design of mRNA translation initiation regions for systematic optimization of gene expression levels
journal, March 2014
- Seo, Sang Woo; Yang, Jae-Seong; Cho, Han-Saem
- Scientific Reports, Vol. 4, Issue 1
Genome‐wide study of mRNA degradation and transcript elongation in E scherichia coli
journal, January 2015
- Chen, Huiyi; Shiroguchi, Katsuyuki; Ge, Hao
- Molecular Systems Biology, Vol. 11, Issue 1
The sufR Gene (sll0088 in Synechocystis sp. Strain PCC 6803) Functions as a Repressor of the sufBCDS Operon in Iron-Sulfur Cluster Biogenesis in Cyanobacteria
journal, February 2004
- Wang, T.; Shen, G.; Balasubramanian, R.
- Journal of Bacteriology, Vol. 186, Issue 4
Functional Elements of the Strong psbAI Promoter of Synechococcus elongatus PCC 7942
journal, March 2001
- Nair, U.; Thomas, C.; Golden, S. S.
- Journal of Bacteriology, Vol. 183, Issue 5
Design of riboregulators for control of cyanobacterial (Synechocystis) protein expression
journal, September 2013
- Abe, Koichi; Sakai, Yuta; Nakashima, Saki
- Biotechnology Letters, Vol. 36, Issue 2
Toward the complete proteome of Synechocystis sp. PCC 6803
journal, April 2015
- Gao, Liyan; Wang, Jinlong; Ge, Haitao
- Photosynthesis Research, Vol. 126, Issue 2-3
Illumination stimulates cAMP receptor protein-dependent transcriptional activation from regulatory regions containing class I and class II promoter elements in Synechocystis sp. PCC 6803
journal, June 2009
- Hedger, J.; Holmquist, P. C.; Leigh, K. A.
- Microbiology, Vol. 155, Issue 9
Natural competence for transformation
journal, November 2016
- Blokesch, Melanie
- Current Biology, Vol. 26, Issue 21
Gene Transfer in Leptolyngbya sp. Strain BL0902, a Cyanobacterium Suitable for Production of Biomass and Bioproducts
journal, January 2012
- Taton, Arnaud; Lis, Ewa; Adin, Dawn M.
- PLoS ONE, Vol. 7, Issue 1
CRISPR interference (CRISPRi) for gene regulation and succinate production in cyanobacterium S. elongatus PCC 7942
journal, November 2016
- Huang, Chun-Hung; Shen, Claire R.; Li, Hung
- Microbial Cell Factories, Vol. 15, Issue 1
Genome-wide survey of mRNA half-lives in Bacillus subtilis identifies extremely stable mRNAs
journal, July 2003
- Hambraeus, G.; von Wachenfeldt, C.; Hederstedt, L.
- Molecular Genetics and Genomics, Vol. 269, Issue 5
Control of plastid gene expression: 3′ inverted repeats act as mRNA processing and stabilizing elements, but do not terminate transcription
journal, December 1987
- Stern, David B.; Gruissem, Wilhelm
- Cell, Vol. 51, Issue 6
Mathematical modeling of translation initiation for the estimation of its efficiency to computationally design mRNA sequences with desired expression levels in prokaryotes
journal, January 2010
- Na, Dokyun; Lee, Sunjae; Lee, Doheon
- BMC Systems Biology, Vol. 4, Issue 1
Predicting Translation Initiation Rates for Designing Synthetic Biology
journal, January 2014
- Reeve, Benjamin; Hargest, Thomas; Gilbert, Charlie
- Frontiers in Bioengineering and Biotechnology, Vol. 2
Function and regulation of the cyanobacterial genes lexA, recA and ruvB: LexA is critical to the survival of cells facing inorganic carbon starvation: Analysis of the cyanobacterial genes lexA, recA and ruvB
journal, June 2004
- Domain, Francis; Houot, Laetitia; Chauvat, Franck
- Molecular Microbiology, Vol. 53, Issue 1
Role of NtcB in Activation of Nitrate Assimilation Genes in the Cyanobacterium Synechocystis sp. Strain PCC 6803
journal, October 2001
- Aichi, M.; Takatani, N.; Omata, T.
- Journal of Bacteriology, Vol. 183, Issue 20
Construction and analysis of a recombinant cyanobacterium expressing a chromosomally inserted gene for an ethylene-forming enzyme at the psbAI locus
journal, January 2003
- Takahama, Kazutaka; Matsuoka, Masayoshi; Nagahama, Kazuhiro
- Journal of Bioscience and Bioengineering, Vol. 95, Issue 3, p. 302-305
An expanding universe of small proteins
journal, April 2011
- Hobbs, Errett C.; Fontaine, Fanette; Yin, Xuefeng
- Current Opinion in Microbiology, Vol. 14, Issue 2
Synthetic Riboswitches That Induce Gene Expression in Diverse Bacterial Species
journal, October 2010
- Topp, S.; Reynoso, C. M. K.; Seeliger, J. C.
- Applied and Environmental Microbiology, Vol. 76, Issue 23
An AbrB-Like Transcriptional Regulator, Sll0822, Is Essential for the Activation of Nitrogen-Regulated Genes in Synechocystis sp. PCC 6803
journal, July 2008
- Ishii, Ai; Hihara, Yukako
- Plant Physiology, Vol. 148, Issue 1
Analysis of complete genomes suggests that many prokaryotes do not rely on hairpin formation in transcription termination
journal, December 1998
- Washio, T.; Sasayama, J.; Tomita, M.
- Nucleic Acids Research, Vol. 26, Issue 23
Cyanobacteria as a Platform for Biofuel Production
journal, January 2013
- Nozzi, Nicole E.; Oliver, John W. K.; Atsumi, Shota
- Frontiers in Bioengineering and Biotechnology, Vol. 1
Advances in Metabolic Engineering of Cyanobacteria for Photosynthetic Biochemical Production
journal, October 2015
- Lai, Martin; Lan, Ethan
- Metabolites, Vol. 5, Issue 4
Construction of new synthetic biology tools for the control of gene expression in the cyanobacterium Synechococcus sp. strain PCC 7002 : Construction of New Synthetic Biology Tools
journal, September 2015
- Zess, Erin K.; Begemann, Matthew B.; Pfleger, Brian F.
- Biotechnology and Bioengineering, Vol. 113, Issue 2
VESPA: software to facilitate genomic annotation of prokaryotic organisms through integration of proteomic and transcriptomic data
journal, January 2012
- Peterson, Elena S.; McCue, Lee Ann; Schrimpe-Rutledge, Alexandra C.
- BMC Genomics, Vol. 13, Issue 1
Present and future global distributions of the marine Cyanobacteria Prochlorococcus and Synechococcus
journal, May 2013
- Flombaum, P.; Gallegos, J. L.; Gordillo, R. A.
- Proceedings of the National Academy of Sciences, Vol. 110, Issue 24
Genetic tools for advancement of Synechococcus sp. PCC 7002 as a cyanobacterial chassis
journal, November 2016
- Ruffing, Anne M.; Jensen, Travis J.; Strickland, Lucas M.
- Microbial Cell Factories, Vol. 15, Issue 1
Multiple Gene Repression in Cyanobacteria Using CRISPRi
journal, December 2015
- Yao, Lun; Cengic, Ivana; Anfelt, Josefine
- ACS Synthetic Biology, Vol. 5, Issue 3
Synthetic Biology Toolbox for Controlling Gene Expression in the Cyanobacterium Synechococcus sp. strain PCC 7002
journal, September 2014
- Markley, Andrew L.; Begemann, Matthew B.; Clarke, Ryan E.
- ACS Synthetic Biology, Vol. 4, Issue 5
Photosynthetic approaches to chemical biotechnology
journal, December 2013
- Desai, Shuchi H.; Atsumi, Shota
- Current Opinion in Biotechnology, Vol. 24, Issue 6
A green-light inducible lytic system for cyanobacterial cells
journal, January 2014
- Miyake, Kotone; Abe, Koichi; Ferri, Stefano
- Biotechnology for Biofuels, Vol. 7, Issue 1
Global analysis of mRNA decay and abundance in Escherichia coli at single-gene resolution using two-color fluorescent DNA microarrays
journal, July 2002
- Bernstein, J. A.; Khodursky, A. B.; Lin, P. -H.
- Proceedings of the National Academy of Sciences, Vol. 99, Issue 15
Design and analysis of LacI-repressed promoters and DNA-looping in a cyanobacterium
journal, January 2014
- Camsund, Daniel; Heidorn, Thorsten; Lindblad, Peter
- Journal of Biological Engineering, Vol. 8, Issue 1
Isolation and characterization of the gene encoding the principal sigma factor of the vegetative cell RNA polymerase from the cyanobacterium Anabaena sp. strain PCC 7120.
journal, April 1991
- Brahamsha, B.; Haselkorn, R.
- Journal of Bacteriology, Vol. 173, Issue 8
Inducible expression of heterologous genes targeted to a chromosomal platform in the cyanobacterium Synechococcus sp. PCC 7942
journal, April 1995
- Geerts, D.; Bovy, A.; de Vrieze, G.
- Microbiology, Vol. 141, Issue 4
Half-life measurements of chemical inducers for recombinant gene expression
journal, January 2014
- Politi, Nicolo’; Pasotti, Lorenzo; Zucca, Susanna
- Journal of Biological Engineering, Vol. 8, Issue 1
The bacterial enzyme RppH triggers messenger RNA degradation by 5′ pyrophosphate removal
journal, January 2008
- Deana, Atilio; Celesnik, Helena; Belasco, Joel G.
- Nature, Vol. 451, Issue 7176
DNA repair in the extremely radioresistant bacterium Deinococcus radiodurans
journal, July 1994
- Minton, Kenneth W.
- Molecular Microbiology, Vol. 13, Issue 1
Fur regulates the expression of iron-stress genes in the cyanobacterium Synechococcus sp. strain PCC 7942
journal, June 1996
- Ghassemian, M.; Straus, N. A.
- Microbiology, Vol. 142, Issue 6
Mechanism of low CO 2 -induced activation of the cmp bicarbonate transporter operon by a LysR family protein in the cyanobacterium Synechococcus elongatus strain PCC 7942
journal, April 2008
- Nishimura, Takashi; Takahashi, Yukari; Yamaguchi, Osamu
- Molecular Microbiology, Vol. 68, Issue 1
Repurposing CRISPR as an RNA-Guided Platform for Sequence-Specific Control of Gene Expression
journal, February 2013
- Qi, Lei S.; Larson, Matthew H.; Gilbert, Luke A.
- Cell, Vol. 152, Issue 5, p. 1173-1183
Ploidy in cyanobacteria
journal, September 2011
- Griese, Marco; Lange, Christian; Soppa, Jörg
- FEMS Microbiology Letters, Vol. 323, Issue 2
3'-Inverted repeats in plant mitochondrial mRNAs are processing signals rather than transcription terminators
journal, August 1997
- Dombrowski, S.
- The EMBO Journal, Vol. 16, Issue 16
Strategies for psbA gene expression in cyanobacteria, green algae and higher plants: From transcription to PSII repair
journal, January 2012
- Mulo, Paula; Sakurai, Isamu; Aro, Eva-Mari
- Biochimica et Biophysica Acta (BBA) - Bioenergetics, Vol. 1817, Issue 1
CRISPR-Mediated Modular RNA-Guided Regulation of Transcription in Eukaryotes
journal, July 2013
- Gilbert, Luke A.; Larson, Matthew H.; Morsut, Leonardo
- Cell, Vol. 154, Issue 2, p. 442-451
ppGpp Metabolism Is Involved in Heterocyst Development in the Cyanobacterium Anabaena sp. Strain PCC 7120
journal, August 2013
- Zhang, S. -R.; Lin, G. -M.; Chen, W. -L.
- Journal of Bacteriology, Vol. 195, Issue 19
Regulatory RNAs in photosynthetic cyanobacteria
journal, April 2015
- Kopf, Matthias; Hess, Wolfgang R.
- FEMS Microbiology Reviews, Vol. 39, Issue 3
Design and characterization of molecular tools for a Synthetic Biology approach towards developing cyanobacterial biotechnology
journal, March 2010
- Huang, Hsin-Ho; Camsund, Daniel; Lindblad, Peter
- Nucleic Acids Research, Vol. 38, Issue 8
Nitrogen Control in Cyanobacteria
journal, January 2001
- Herrero, A.; Muro-Pastor, A. M.; Flores, E.
- Journal of Bacteriology, Vol. 183, Issue 2
Identification and Characterization of a Novel cAMP Receptor Protein in the Cyanobacterium Synechocystis sp. PCC 6803
journal, February 2000
- Yoshimura, Hidehisa; Hisabori, Toru; Yanagisawa, Shuichi
- Journal of Biological Chemistry, Vol. 275, Issue 9
Involvement of a CbbR Homolog in Low CO2-Induced Activation of the Bicarbonate Transporter Operon in Cyanobacteria
journal, March 2001
- Omata, T.; Gohta, S.; Takahashi, Y.
- Journal of Bacteriology, Vol. 183, Issue 6
Gene Transfer to the Desiccation-Tolerant Cyanobacterium Chroococcidiopsis
journal, April 2001
- Billi, D.; Friedmann, E. I.; Helm, R. F.
- Journal of Bacteriology, Vol. 183, Issue 7
Global survey of mRNA levels and decay rates of Chlamydia trachomatis trachoma and lymphogranuloma venereum biovars
journal, July 2017
- Ferreira, Rita; Borges, Vítor; Borrego, Maria José
- Heliyon, Vol. 3, Issue 7
Zn 2+ -Inducible Expression Platform for Synechococcus sp. Strain PCC 7002 Based on the smtA Promoter/Operator and smtB Repressor
journal, November 2016
- Pérez, Adam A.; Gajewski, John P.; Ferlez, Bryan H.
- Applied and Environmental Microbiology, Vol. 83, Issue 3
Experimental and computational analysis of transcriptional start sites in the cyanobacterium Prochlorococcus MED4
journal, June 2003
- Vogel, J.
- Nucleic Acids Research, Vol. 31, Issue 11
Photosynthetic nitrate assimilation in cyanobacteria
journal, February 2005
- Flores, Enrique; Frías, José E.; Rubio, Luis M.
- Photosynthesis Research, Vol. 83, Issue 2
The FurA regulon in Anabaena sp. PCC 7120: in silico prediction and experimental validation of novel target genes
journal, February 2014
- González, Andrés; Angarica, Vladimir Espinosa; Sancho, Javier
- Nucleic Acids Research, Vol. 42, Issue 8
Role of Multiple HLR1 Sequences in the Regulation of the Dual Promoters of the psaAB Genes in Synechocystis sp. PCC 6803
journal, May 2010
- Takahashi, T.; Nakai, N.; Muramatsu, M.
- Journal of Bacteriology, Vol. 192, Issue 15
Linkage of catalysis and 5′ end recognition in ribonuclease RNase J
journal, August 2015
- Pei, Xue-Yuan; Bralley, Patricia; Jones, George H.
- Nucleic Acids Research, Vol. 43, Issue 16
Comparative Study of Cyanobacterial and E. coli RNA Polymerases: Misincorporation, Abortive Transcription, and Dependence on Divalent Cations
journal, January 2011
- Imashimizu, Masahiko; Tanaka, Kan; Shimamoto, Nobuo
- Genetics Research International, Vol. 2011
Full transcription of the chloroplast genome in photosynthetic eukaryotes
journal, July 2016
- Shi, Chao; Wang, Shuo; Xia, En-Hua
- Scientific Reports, Vol. 6, Issue 1
Prediction of rho-independent transcriptional terminators in Escherichia coli
journal, September 2001
- Lesnik, E. A.
- Nucleic Acids Research, Vol. 29, Issue 17
Genome Engineering in Cyanobacteria: Where We Are and Where We Need To Go
journal, June 2015
- Ramey, C. Josh; Barón-Sola, Ángel; Aucoin, Hanna R.
- ACS Synthetic Biology, Vol. 4, Issue 11
Genetic Instability in Cyanobacteria – An Elephant in the Room?
journal, May 2014
- Jones, Patrik R.
- Frontiers in Bioengineering and Biotechnology, Vol. 2
Cpf1 Is a Single RNA-Guided Endonuclease of a Class 2 CRISPR-Cas System
journal, October 2015
- Zetsche, Bernd; Gootenberg, Jonathan S.; Abudayyeh, Omar O.
- Cell, Vol. 163, Issue 3, p. 759-771
Regulation of Gene Expression in Diverse Cyanobacterial Species by Using Theophylline-Responsive Riboswitches
journal, August 2014
- Ma, Amy T.; Schmidt, Calvin M.; Golden, James W.
- Applied and Environmental Microbiology, Vol. 80, Issue 21
Unlocking the Constraints of Cyanobacterial Productivity: Acclimations Enabling Ultrafast Growth
journal, July 2016
- Bernstein, Hans C.; McClure, Ryan S.; Hill, Eric A.
- mBio, Vol. 7, Issue 4
The ordered processing of intervening sequences in 23S rRNA of Rhodobacter sphaeroides requires RNase J
journal, March 2012
- Rische, Tom; Klug, Gabriele
- RNA Biology, Vol. 9, Issue 3
Broad-host-range vector system for synthetic biology and biotechnology in cyanobacteria
journal, July 2014
- Taton, Arnaud; Unglaub, Federico; Wright, Nicole E.
- Nucleic Acids Research, Vol. 42, Issue 17
Temperature-regulated mRNA accumulation and stabilization for fatty acid desaturase genes in the cyanobacterium Synechococcus sp. strain PCC 7002
journal, March 1997
- Sakamoto, Toshio; Bryant, Donald A.
- Molecular Microbiology, Vol. 23, Issue 6
Small proteins in cyanobacteria provide a paradigm for the functional analysis of the bacterial micro-proteome
journal, November 2016
- Baumgartner, Desiree; Kopf, Matthias; Klähn, Stephan
- BMC Microbiology, Vol. 16, Issue 1
Translation rate is controlled by coupled trade-offs between site accessibility, selective RNA unfolding and sliding at upstream standby sites
journal, November 2013
- Espah Borujeni, Amin; Channarasappa, Anirudh S.; Salis, Howard M.
- Nucleic Acids Research, Vol. 42, Issue 4
Cyanobacterial Heterocysts
journal, February 2010
- Kumar, K.; Mella-Herrera, R. A.; Golden, J. W.
- Cold Spring Harbor Perspectives in Biology, Vol. 2, Issue 4
Genetic and genomic analysis of RNases in model cyanobacteria
journal, January 2015
- Cameron, Jeffrey C.; Gordon, Gina C.; Pfleger, Brian F.
- Photosynthesis Research, Vol. 126, Issue 1
Transcription activation by catabolite activator protein (CAP)
journal, October 1999
- Busby, Steve; Ebright, Richard H.
- Journal of Molecular Biology, Vol. 293, Issue 2
Mycobacterium smegmatis RNase J is a 5′-3′ exo-/endoribonuclease and both RNase J and RNase E are involved in ribosomal RNA maturation: M. smegmatis RNases J and E and rRNA maturation
journal, November 2011
- Taverniti, Valerio; Forti, Francesca; Ghisotti, Daniela
- Molecular Microbiology, Vol. 82, Issue 5
Network analysis of transcriptomics expands regulatory landscapes in Synechococcus sp. PCC 7002
journal, August 2016
- McClure, Ryan S.; Overall, Christopher C.; McDermott, Jason E.
- Nucleic Acids Research, Vol. 44, Issue 18
Automated design of synthetic ribosome binding sites to control protein expression
journal, October 2009
- Salis, Howard M.; Mirsky, Ethan A.; Voigt, Christopher A.
- Nature Biotechnology, Vol. 27, Issue 10, p. 946-950
The CRISPR-associated DNA-cleaving enzyme Cpf1 also processes precursor CRISPR RNA
journal, April 2016
- Fonfara, Ines; Richter, Hagen; Bratovič, Majda
- Nature, Vol. 532, Issue 7600
Electroporation as a tool to transfer the plasmid pRL489 in Oscillatoria MKU 277
journal, July 2006
- Ravindran, C. R. Marutha; Suguna, S.; Shanmugasundaram, S.
- Journal of Microbiological Methods, Vol. 66, Issue 1
Structure of Escherichia coli RNase E catalytic domain and implications for RNA turnover
journal, October 2005
- Callaghan, Anastasia J.; Marcaida, Maria Jose; Stead, Jonathan A.
- Nature, Vol. 437, Issue 7062
Wide-dynamic-range promoters engineered for cyanobacteria
journal, January 2013
- Huang, Hsin-Ho; Lindblad, Peter
- Journal of Biological Engineering, Vol. 7, Issue 1
Genome Engineering of the 2,3-Butanediol Biosynthetic Pathway for Tight Regulation in Cyanobacteria
journal, May 2015
- Nozzi, Nicole E.; Atsumi, Shota
- ACS Synthetic Biology, Vol. 4, Issue 11
A single mutation in the core domain of the lac repressor reduces leakiness
journal, January 2013
- Gatti-Lafranconi, Pietro; Dijkman, Willem P.; Devenish, Sean RA
- Microbial Cell Factories, Vol. 12, Issue 1
Cyanobacterial chemical production
journal, August 2016
- Case, Anna E.; Atsumi, Shota
- Journal of Biotechnology, Vol. 231
A Light-Dependent Mechanism for Massive Accumulation of Manganese in the Photosynthetic Bacterium Synechocystis sp. PCC 6803 †
journal, December 2002
- Keren, Nir; Kidd, Matthew J.; Penner-Hahn, James E.
- Biochemistry, Vol. 41, Issue 50
Engineered Transcriptional Systems for Cyanobacterial Biotechnology
journal, October 2014
- Camsund, Daniel; Lindblad, Peter
- Frontiers in Bioengineering and Biotechnology, Vol. 2
Identification of the RNA Pyrophosphohydrolase RppH of Helicobacter pylori and Global Analysis of Its RNA Targets
journal, December 2016
- Bischler, Thorsten; Hsieh, Ping-kun; Resch, Marcus
- Journal of Biological Chemistry, Vol. 292, Issue 5
Enhanced limonene production in cyanobacteria reveals photosynthesis limitations
journal, November 2016
- Wang, Xin; Liu, Wei; Xin, Changpeng
- Proceedings of the National Academy of Sciences, Vol. 113, Issue 50
A Novel RNA Phosphorylation State Enables 5′ End-Dependent Degradation in Escherichia coli
journal, July 2017
- Luciano, Daniel J.; Vasilyev, Nikita; Richards, Jamie
- Molecular Cell, Vol. 67, Issue 1
CRISPR/Cas9 mediated targeted mutagenesis of the fast growing cyanobacterium Synechococcus elongatus UTEX 2973
journal, June 2016
- Wendt, Kristen E.; Ungerer, Justin; Cobb, Ryan E.
- Microbial Cell Factories, Vol. 15, Issue 1
Rationally designed families of orthogonal RNA regulators of translation
journal, March 2012
- Mutalik, Vivek K.; Qi, Lei; Guimaraes, Joao C.
- Nature Chemical Biology, Vol. 8, Issue 5, p. 447-454
Deletion within the metallothionein locus of cadmium-tolerant Synechococcus PCC 6301 involving a highly iterated palindrome (HIP1)
journal, January 1993
- Gupta, Amit; Morby, Andrew P.; Turner, Jennifer S.
- Molecular Microbiology, Vol. 7, Issue 2
Engineering of photosynthetic mannitol biosynthesis from CO2 in a cyanobacterium
journal, January 2014
- Jacobsen, Jacob H.; Frigaard, Niels-Ulrik
- Metabolic Engineering, Vol. 21
SCO5745, a Bifunctional RNase J Ortholog, Affects Antibiotic Production in Streptomyces coelicolor
journal, January 2014
- Bralley, P.; Aseem, M.; Jones, G. H.
- Journal of Bacteriology, Vol. 196, Issue 6
Global mRNA decay analysis at single nucleotide resolution reveals segmental and positional degradation patterns in a Gram-positive bacterium
journal, January 2012
- Kristoffersen, Simen M.; Haase, Chad; Weil, M. Ryan
- Genome Biology, Vol. 13, Issue 4
Metabolic Engineering of Synechocystis sp. Strain PCC 6803 for Isobutanol Production
journal, November 2012
- Varman, Arul M.; Xiao, Yi; Pakrasi, Himadri B.
- Applied and Environmental Microbiology, Vol. 79, Issue 3
CyAbrB2 Contributes to the Transcriptional Regulation of Low CO 2 Acclimation in Synechocystis sp. PCC 6803
journal, September 2016
- Orf, Isabel; Schwarz, Doreen; Kaplan, Aaron
- Plant and Cell Physiology, Vol. 57, Issue 10
Molecular mechanism for the operation of nitrogen control in cyanobacteria.
journal, June 1994
- Luque, I.; Flores, E.; Herrero, A.
- The EMBO Journal, Vol. 13, Issue 12
Cloning and light regulation of expression of the phycocyanin operon of the cyanobacterium Anabaena.
journal, April 1987
- Belknap, W. R.; Haselkorn, R.
- The EMBO Journal, Vol. 6, Issue 4
The phycobilisome, a light-harvesting complex responsive to environmental conditions.
journal, January 1993
- Grossman, A. R.; Schaefer, M. R.; Chiang, G. G.
- Microbiological Reviews, Vol. 57, Issue 3
Counterselectable Markers: Untapped Tools for Bacterial Genetics and Pathogenesis
journal, September 1998
- Reyrat, Jean-Marc; Pelicic, Vladimir; Gicquel, Brigitte
- Infection and Immunity, Vol. 66, Issue 9
A genetic manipulation system for oceanic cyanobacteria of the genus Synechococcus.
journal, January 1996
- Brahamsha, B.
- Applied and environmental microbiology, Vol. 62, Issue 5
Works referencing / citing this record:
Metabolic engineering of a fast-growing cyanobacterium Synechococcus elongatus PCC 11801 for photoautotrophic production of succinic acid
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