Computational approaches to substrate-based cell motility
Abstract
Substrate-based crawling motility of eukaryotic cells is essential for many biological functions, both in developing and mature organisms. Motility dysfunctions are involved in several life-threatening pathologies such as cancer and metastasis. Motile cells are also a natural realization of active, self-propelled ‘particles’, a popular research topic in nonequilibrium physics. Finally, from the materials perspective, assemblies of motile cells and evolving tissues constitute a class of adaptive self-healing materials that respond to the topography, elasticity, and surface chemistry of the environment and react to external stimuli. Although a comprehensive understanding of substrate-based cell motility remains elusive, progress has been achieved recently in its modeling on the whole cell level. Furthermore we survey the most recent advances in computational approaches to cell movement and demonstrate how these models improve our understanding of complex self-organized systems such as living cells.
- Authors:
-
- Albert-Ludwigs-Univ. Freiburg, Freiburg (Germany); Institut Charles Sadron, Strasbourg (France)
- Argonne National Lab. (ANL), Argonne, IL (United States); Northwestern Univ., Evanston, IL (United States)
- Publication Date:
- Research Org.:
- Argonne National Laboratory (ANL), Argonne, IL (United States)
- Sponsoring Org.:
- USDOE Office of Science (SC), Basic Energy Sciences (BES); Materials Sciences and Engineering Division; German Science Foundation
- OSTI Identifier:
- 1352532
- Grant/Contract Number:
- AC02-06CH11357
- Resource Type:
- Accepted Manuscript
- Journal Name:
- npj Computational Materials
- Additional Journal Information:
- Journal Volume: 2; Journal ID: ISSN 2057-3960
- Publisher:
- Nature Publishing Group
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 36 MATERIALS SCIENCE; 25 ENERGY STORAGE
Citation Formats
Ziebert, Falko, and Aranson, Igor S. Computational approaches to substrate-based cell motility. United States: N. p., 2016.
Web. doi:10.1038/npjcompumats.2016.19.
Ziebert, Falko, & Aranson, Igor S. Computational approaches to substrate-based cell motility. United States. https://doi.org/10.1038/npjcompumats.2016.19
Ziebert, Falko, and Aranson, Igor S. Fri .
"Computational approaches to substrate-based cell motility". United States. https://doi.org/10.1038/npjcompumats.2016.19. https://www.osti.gov/servlets/purl/1352532.
@article{osti_1352532,
title = {Computational approaches to substrate-based cell motility},
author = {Ziebert, Falko and Aranson, Igor S.},
abstractNote = {Substrate-based crawling motility of eukaryotic cells is essential for many biological functions, both in developing and mature organisms. Motility dysfunctions are involved in several life-threatening pathologies such as cancer and metastasis. Motile cells are also a natural realization of active, self-propelled ‘particles’, a popular research topic in nonequilibrium physics. Finally, from the materials perspective, assemblies of motile cells and evolving tissues constitute a class of adaptive self-healing materials that respond to the topography, elasticity, and surface chemistry of the environment and react to external stimuli. Although a comprehensive understanding of substrate-based cell motility remains elusive, progress has been achieved recently in its modeling on the whole cell level. Furthermore we survey the most recent advances in computational approaches to cell movement and demonstrate how these models improve our understanding of complex self-organized systems such as living cells.},
doi = {10.1038/npjcompumats.2016.19},
journal = {npj Computational Materials},
number = ,
volume = 2,
place = {United States},
year = {Fri Jul 15 00:00:00 EDT 2016},
month = {Fri Jul 15 00:00:00 EDT 2016}
}
Web of Science
Works referenced in this record:
Traction Dynamics of Filopodia on Compliant Substrates
journal, December 2008
- Chan, C. E.; Odde, D. J.
- Science, Vol. 322, Issue 5908
Spontaneous symmetry breaking in active droplets provides a generic route to motility
journal, July 2012
- Tjhung, E.; Marenduzzo, D.; Cates, M. E.
- Proceedings of the National Academy of Sciences, Vol. 109, Issue 31
The Forces Behind Cell Movement
journal, January 2007
- Ananthakrishnan, Revathi; Ehrlicher, Allen
- International Journal of Biological Sciences
Periodic Migration in a Physical Model of Cells on Micropatterns
journal, October 2013
- Camley, Brian A.; Zhao, Yanxiang; Li, Bo
- Physical Review Letters, Vol. 111, Issue 15
Cell Spreading and Lamellipodial Extension Rate Is Regulated by Membrane Tension
journal, January 2000
- Raucher, Drazen; Sheetz, Michael P.
- The Journal of Cell Biology, Vol. 148, Issue 1
Oscillatory motions of an active deformable particle
journal, June 2013
- Tarama, Mitsusuke; Ohta, Takao
- Physical Review E, Vol. 87, Issue 6
Bipedal Locomotion in Crawling Cells
journal, March 2010
- Barnhart, Erin L.; Allen, Greg M.; Jülicher, Frank
- Biophysical Journal, Vol. 98, Issue 6
Nonlinear Field Equations for Aligning Self-Propelled Rods
journal, December 2012
- Peshkov, Anton; Aranson, Igor S.; Bertin, Eric
- Physical Review Letters, Vol. 109, Issue 26
Modeling crawling cell movement on soft engineered substrates
journal, January 2014
- Löber, Jakob; Ziebert, Falko; Aranson, Igor S.
- Soft Matter, Vol. 10, Issue 9
Computational Model for Cell Morphodynamics
journal, September 2010
- Shao, Danying; Rappel, Wouter-Jan; Levine, Herbert
- Physical Review Letters, Vol. 105, Issue 10
Dynamics of Cell Ensembles on Adhesive Micropatterns: Bridging the Gap between Single Cell Spreading and Collective Cell Migration
journal, April 2016
- Albert, Philipp J.; Schwarz, Ulrich S.
- PLOS Computational Biology, Vol. 12, Issue 4
Collective migration under hydrodynamic interactions -- a computational approach
preprint, January 2016
- Marth, Wieland; Voigt, Axel
- arXiv
Velocity Fields in a Collectively Migrating Epithelium
journal, May 2010
- Petitjean, L.; Reffay, M.; Grasland-Mongrain, E.
- Biophysical Journal, Vol. 98, Issue 9
Continuum Field Description of Crack Propagation
journal, July 2000
- Aranson, I. S.; Kalatsky, V. A.; Vinokur, V. M.
- Physical Review Letters, Vol. 85, Issue 1
Ligand density elicits a phenotypic switch in human neutrophils
journal, January 2014
- Henry, Steven J.; Crocker, John C.; Hammer, Daniel A.
- Integrative Biology, Vol. 6, Issue 3
Glass-like dynamics of collective cell migration
journal, February 2011
- Angelini, T. E.; Hannezo, E.; Trepat, X.
- Proceedings of the National Academy of Sciences, Vol. 108, Issue 12
Cell Motility Resulting from Spontaneous Polymerization Waves
journal, December 2011
- Doubrovinski, K.; Kruse, K.
- Physical Review Letters, Vol. 107, Issue 25
Collective migration of an epithelial monolayer in response to a model wound
journal, September 2007
- Poujade, M.; Grasland-Mongrain, E.; Hertzog, A.
- Proceedings of the National Academy of Sciences, Vol. 104, Issue 41
Growth Factors, Matrices, and Forces Combine and Control Stem Cells
journal, June 2009
- Discher, D. E.; Mooney, D. J.; Zandstra, P. W.
- Science, Vol. 324, Issue 5935
A Comparison of Computational Models for Eukaryotic Cell Shape and Motility
journal, December 2012
- Holmes, William R.; Edelstein-Keshet, Leah
- PLoS Computational Biology, Vol. 8, Issue 12
Continuum description of avalanches in granular media
book, December 2020
- Tsimring, Lev S.; Aranson, Igor S.
- Powders and Grains 2001
CellTrack: an open-source software for cell tracking and motility analysis
journal, May 2008
- Sacan, A.; Ferhatosmanoglu, H.; Coskun, H.
- Bioinformatics, Vol. 24, Issue 14
Collective migration under hydrodynamic interactions: a computational approach
journal, October 2016
- Marth, W.; Voigt, A.
- Interface Focus, Vol. 6, Issue 5
Diffuse interface models of locally inextensible vesicles in a viscous fluid
journal, November 2014
- Aland, Sebastian; Egerer, Sabine; Lowengrub, John
- Journal of Computational Physics, Vol. 277
Crawling Cells Can Close Wounds Without Purse Strings or Signaling
journal, February 2011
- Wolgemuth, Charles W.; Lee, Pilhwa
- Biophysical Journal, Vol. 100, Issue 3
Effects of Adhesion Dynamics and Substrate Compliance on the Shape and Motility of Crawling Cells
journal, May 2013
- Ziebert, Falko; Aranson, Igor S.
- PLoS ONE, Vol. 8, Issue 5
Principles of locomotion for simple-shaped cells
journal, March 1993
- Lee, Juliet; Ishihara, Akira; Theriot, Julie A.
- Nature, Vol. 362, Issue 6416
A mesoscopic field theoretical approach for active systems
text, January 2016
- Alaimo, Francesco; Praetorius, Simon; Voigt, Axel
- arXiv
An Adaptive Finite Element Multi-Mesh Approach for Interacting Deformable Objects in Flow
journal, January 2016
- Ling, Siqi; Marth, Wieland; Praetorius, Simon
- Computational Methods in Applied Mathematics, Vol. 16, Issue 3
Analysis of actin dynamics at the leading edge of crawling cells: implications for the shape of keratocyte lamellipodia
journal, October 2003
- Grimm, H. P.; Verkhovsky, A. B.; Mogilner, A.
- European Biophysics Journal, Vol. 32, Issue 6
Tumbling of vesicles under shear flow within an advected-field approach
journal, March 2003
- Biben, T.; Misbah, C.
- Physical Review E, Vol. 67, Issue 3
The interaction of Arp2/3 complex with actin: Nucleation, high affinity pointed end capping, and formation of branching networks of filaments
journal, May 1998
- Mullins, R. D.; Heuser, J. A.; Pollard, T. D.
- Proceedings of the National Academy of Sciences, Vol. 95, Issue 11
Continuum model of cell adhesion and migration
journal, May 2008
- Kuusela, Esa; Alt, Wolfgang
- Journal of Mathematical Biology, Vol. 58, Issue 1-2
A hybrid particle-mesh method for incompressible active polar viscous gels
journal, June 2015
- Ramaswamy, Rajesh; Bourantas, George; Jülicher, Frank
- Journal of Computational Physics, Vol. 291
Physical forces during collective cell migration
journal, May 2009
- Trepat, Xavier; Wasserman, Michael R.; Angelini, Thomas E.
- Nature Physics, Vol. 5, Issue 6
Use the force: membrane tension as an organizer of cell shape and motility
journal, February 2013
- Diz-Muñoz, Alba; Fletcher, Daniel A.; Weiner, Orion D.
- Trends in Cell Biology, Vol. 23, Issue 2
Force transmission in migrating cells
journal, January 2010
- Fournier, Maxime F.; Sauser, Roger; Ambrosi, Davide
- The Journal of Cell Biology, Vol. 188, Issue 2
Emerging modes of collective cell migration induced by geometrical constraints
journal, July 2012
- Vedula, S. R. K.; Leong, M. C.; Lai, T. L.
- Proceedings of the National Academy of Sciences, Vol. 109, Issue 32
Membrane Tension in Rapidly Moving Cells Is Determined by Cytoskeletal Forces
journal, August 2013
- Lieber, Arnon D.; Yehudai-Resheff, Shlomit; Barnhart, Erin L.
- Current Biology, Vol. 23, Issue 15
Viscous flows in two dimensions
journal, October 1986
- Bensimon, David; Kadanoff, Leo P.; Liang, Shoudan
- Reviews of Modern Physics, Vol. 58, Issue 4
Phase-Field Models for Microstructure Evolution
journal, August 2002
- Chen, Long-Qing
- Annual Review of Materials Research, Vol. 32, Issue 1
Pattern selection in fingered growth phenomena
journal, June 1988
- Kessler, David A.; Koplik, Joel; Levine, Herbert
- Advances in Physics, Vol. 37, Issue 3
Contractility and retrograde flow in lamellipodium motion
journal, June 2006
- Kruse, K.; Joanny, J. F.; Jülicher, F.
- Physical Biology, Vol. 3, Issue 2
Spontaneous motion in hierarchically assembled active matter
journal, November 2012
- Sanchez, Tim; Chen, Daniel T. N.; DeCamp, Stephen J.
- Nature, Vol. 491, Issue 7424
Guidance of collective cell migration by substrate geometry
journal, January 2013
- Doxzen, Kevin; Vedula, Sri Ram Krishna; Leong, Man Chun
- Integrative Biology, Vol. 5, Issue 8
Novel Type of Phase Transition in a System of Self-Driven Particles
journal, August 1995
- Vicsek, Tamás; Czirók, András; Ben-Jacob, Eshel
- Physical Review Letters, Vol. 75, Issue 6
Polarity mechanisms such as contact inhibition of locomotion regulate persistent rotational motion of mammalian cells on micropatterns
journal, September 2014
- Camley, B. A.; Zhang, Y.; Zhao, Y.
- Proceedings of the National Academy of Sciences, Vol. 111, Issue 41
Mechanisms of cell propulsion by active stresses
journal, July 2011
- Carlsson, A. E.
- New Journal of Physics, Vol. 13, Issue 7
Membrane tension feedback on shape and motility of eukaryotic cells
journal, April 2016
- Winkler, Benjamin; Aranson, Igor S.; Ziebert, Falko
- Physica D: Nonlinear Phenomena, Vol. 318-319
Electron tomography reveals unbranched networks of actin filaments in lamellipodia
journal, April 2010
- Urban, Edit; Jacob, Sonja; Nemethova, Maria
- Nature Cell Biology, Vol. 12, Issue 5
Adaptive Mesh Refinement Computation of Solidification Microstructures Using Dynamic Data Structures
journal, January 1999
- Provatas, Nikolas; Goldenfeld, Nigel; Dantzig, Jonathan
- Journal of Computational Physics, Vol. 148, Issue 1
Cell Movement Is Guided by the Rigidity of the Substrate
journal, July 2000
- Lo, Chun-Min; Wang, Hong-Bei; Dembo, Micah
- Biophysical Journal, Vol. 79, Issue 1
Cell Migration Driven by Cooperative Substrate Deformation Patterns
journal, April 2010
- Angelini, Thomas E.; Hannezo, Edouard; Trepat, Xavier
- Physical Review Letters, Vol. 104, Issue 16
Actin Filament Elasticity and Retrograde Flow Shape the Force-Velocity Relation of Motile Cells
journal, January 2012
- Zimmermann, Juliane; Brunner, Claudia; Enculescu, Mihaela
- Biophysical Journal, Vol. 102, Issue 2
Cellular motions and thermal fluctuations: the Brownian ratchet
journal, July 1993
- Peskin, C. S.; Odell, G. M.; Oster, G. F.
- Biophysical Journal, Vol. 65, Issue 1
Persistent, directional motility of cells and cytoplasmic fragments in the absence of microtubules
journal, July 1984
- Euteneuer, Ursula; Schliwa, Manfred
- Nature, Vol. 310, Issue 5972
Spontaneous Division and Motility in Active Nematic Droplets
journal, April 2014
- Giomi, Luca; DeSimone, Antonio
- Physical Review Letters, Vol. 112, Issue 14
Elastic Properties of Lipid Bilayers: Theory and Possible Experiments
journal, December 1973
- Helfrich, W.
- Zeitschrift für Naturforschung C, Vol. 28, Issue 11-12
Continuum description of avalanches in granular media
journal, July 2001
- Aranson, Igor S.; Tsimring, Lev S.
- Physical Review E, Vol. 64, Issue 2
Evidence of a large-scale mechanosensing mechanism for cellular adaptation to substrate stiffness
journal, April 2012
- Trichet, L.; Le Digabel, J.; Hawkins, R. J.
- Proceedings of the National Academy of Sciences, Vol. 109, Issue 18
Switchable adhesive substrates: Revealing geometry dependence in collective cell behavior
journal, March 2012
- Rolli, Claudio G.; Nakayama, Hidekazu; Yamaguchi, Kazuo
- Biomaterials, Vol. 33, Issue 8
Emergence of agent swarm migration and vortex formation through inelastic collisions
journal, February 2008
- Grossman, D.; Aranson, I. S.; Ben Jacob, E.
- New Journal of Physics, Vol. 10, Issue 2
Physics of adherent cells
journal, August 2013
- Schwarz, Ulrich S.; Safran, Samuel A.
- Reviews of Modern Physics, Vol. 85, Issue 3
A computational model of cell migration coupling the growth of focal adhesions with oscillatory cell protrusions
journal, August 2008
- Stéphanou, Angélique; Mylona, Eleni; Chaplain, Mark
- Journal of Theoretical Biology, Vol. 253, Issue 4
Swimming Droplets
journal, March 2016
- Maass, Corinna C.; Krüger, Carsten; Herminghaus, Stephan
- Annual Review of Condensed Matter Physics, Vol. 7, Issue 1
Actin–myosin network reorganization breaks symmetry at the cell rear to spontaneously initiate polarized cell motility
journal, September 2007
- Yam, Patricia T.; Wilson, Cyrus A.; Ji, Lin
- The Journal of Cell Biology, Vol. 178, Issue 7
Phase transition in the collective migration of tissue cells: Experiment and model
journal, December 2006
- Szabó, B.; Szöllösi, G. J.; Gönci, B.
- Physical Review E, Vol. 74, Issue 6
Alignment of cellular motility forces with tissue flow as a mechanism for efficient wound healing
journal, January 2013
- Basan, M.; Elgeti, J.; Hannezo, E.
- Proceedings of the National Academy of Sciences, Vol. 110, Issue 7
Direct measurement of the lamellipodial protrusive force in a migrating cell
journal, September 2006
- Prass, Marcus; Jacobson, Ken; Mogilner, Alex
- The Journal of Cell Biology, Vol. 174, Issue 6
Morphodynamic Profiling of Protrusion Phenotypes
journal, February 2006
- Machacek, M.; Danuser, G.
- Biophysical Journal, Vol. 90, Issue 4
Swarming behavior of simple model squirmers
journal, July 2011
- Thutupalli, Shashi; Seemann, Ralf; Herminghaus, Stephan
- New Journal of Physics, Vol. 13, Issue 7
Branching, Capping, and Severing in Dynamic Actin Structures
journal, August 2007
- Gopinathan, Ajay; Lee, Kun-Chun; Schwarz, J. M.
- Physical Review Letters, Vol. 99, Issue 5
Locomotion of fish epidermal keratocytes on spatially selective adhesion patterns
journal, November 2007
- Csucs, Gabor; Quirin, Katharina; Danuser, Gaudenz
- Cell Motility and the Cytoskeleton, Vol. 64, Issue 11
Redundant Mechanisms for Stable Cell Locomotion Revealed by Minimal Models
journal, August 2011
- Wolgemuth, Charles W.; Stajic, Jelena; Mogilner, Alex
- Biophysical Journal, Vol. 101, Issue 3
Collisions of deformable cells lead to collective migration
journal, March 2015
- Löber, Jakob; Ziebert, Falko; Aranson, Igor S.
- Scientific Reports, Vol. 5, Issue 1
Comparison between advected-field and level-set methods in the study of vesicle dynamics
journal, July 2012
- Maitre, E.; Misbah, C.; Peyla, P.
- Physica D: Nonlinear Phenomena, Vol. 241, Issue 13
Cell motility driven by actin polymerization
journal, December 1996
- Mogilner, A.; Oster, G.
- Biophysical Journal, Vol. 71, Issue 6
Myosin light chain kinase regulates cell polarization independently of membrane tension or Rho kinase
journal, April 2015
- Lou, Sunny S.; Diz-Muñoz, Alba; Weiner, Orion D.
- The Journal of Cell Biology, Vol. 209, Issue 2
Asters, Vortices, and Rotating Spirals in Active Gels of Polar Filaments
journal, February 2004
- Kruse, K.; Joanny, J. F.; Jülicher, F.
- Physical Review Letters, Vol. 92, Issue 7
Emergence and Persistence of Collective Cell Migration on Small Circular Micropatterns
text, January 2015
- Segerer, Felix J.; Thüroff, Florian; Alberola, Alicia Piera
- arXiv
Modular approach for modeling cell motility
journal, June 2014
- Ziebert, F.; Aranson, I. S.
- The European Physical Journal Special Topics, Vol. 223, Issue 7
On an evolution equation in a cell motility model
journal, April 2016
- Mizuhara, Matthew S.; Berlyand, Leonid; Rybalko, Volodymyr
- Physica D: Nonlinear Phenomena, Vol. 318-319
Modelling cell motility and chemotaxis with evolving surface finite elements
journal, June 2012
- Elliott, Charles M.; Stinner, Björn; Venkataraman, Chandrasekhar
- Journal of The Royal Society Interface, Vol. 9, Issue 76
Actin, a Central Player in Cell Shape and Movement
journal, November 2009
- Pollard, Thomas D.; Cooper, John A.
- Science, Vol. 326, Issue 5957
Simulation of biological cell sorting using a two-dimensional extended Potts model
journal, September 1992
- Graner, François; Glazier, James A.
- Physical Review Letters, Vol. 69, Issue 13
Phase-field model for Hele-Shaw flows with arbitrary viscosity contrast. I. Theoretical approach
text, January 1999
- Folch, R.; Casademunt, J.; Hernandez-Machado, A.
- arXiv
Spiral actin-polymerization waves can generate amoeboidal cell crawling
journal, May 2014
- Dreher, A.; Aranson, I. S.; Kruse, K.
- New Journal of Physics, Vol. 16, Issue 5
Modeling of the actin-cytoskeleton in symmetric lamellipodial fragments
journal, April 2008
- Oelz, Dietmar; Schmeiser, Christian; Small, J. Victor
- Cell Adhesion & Migration, Vol. 2, Issue 2
Phase-field model for collective cell migration
journal, May 2016
- Najem, Sara; Grant, Martin
- Physical Review E, Vol. 93, Issue 5
Optimality of Contraction-Driven Crawling
journal, May 2014
- Recho, P.; Joanny, J. -F.; Truskinovsky, L.
- Physical Review Letters, Vol. 112, Issue 21
Quantitative phase-field modeling of dendritic growth in two and three dimensions
journal, April 1998
- Karma, Alain; Rappel, Wouter-Jan
- Physical Review E, Vol. 57, Issue 4
Phase-field model for Hele-Shaw flows with arbitrary viscosity contrast. II. Numerical study
journal, August 1999
- Folch, R.; Casademunt, J.; Hernández-Machado, A.
- Physical Review E, Vol. 60, Issue 2
Spontaneous Motility of Actin Lamellar Fragments
journal, February 2013
- Blanch-Mercader, C.; Casademunt, J.
- Physical Review Letters, Vol. 110, Issue 7
The phase field technique for modeling multiphase materials
journal, October 2008
- Singer-Loginova, I.; Singer, H. M.
- Reports on Progress in Physics, Vol. 71, Issue 10
An Adhesion-Dependent Switch between Mechanisms That Determine Motile Cell Shape
journal, May 2011
- Barnhart, Erin L.; Lee, Kun-Chun; Keren, Kinneret
- PLoS Biology, Vol. 9, Issue 5
A phase-field approach for stress-induced instabilities
journal, April 1999
- Kassner, K.; Misbah, C.
- Europhysics Letters (EPL), Vol. 46, Issue 2
Redundant Mechanisms for Stable Cell Locomotion Revealed by Minimal Models
journal, January 2010
- Wolgemuth, Charles W.; Stajic, Jelena; Mogilner, Alex
- Biophysical Journal, Vol. 98, Issue 3
Physical Properties Determining Self-Organization of Motors and Microtubules
journal, May 2001
- Surrey, T.
- Science, Vol. 292, Issue 5519
Symmetry-breaking in mammalian cell cohort migration during tissue pattern formation: Role of random-walk persistence
journal, January 2005
- Huang, S.; Brangwynne, C. P.; Parker, K. K.
- Cell Motility and the Cytoskeleton, Vol. 61, Issue 4
Symmetry breaking in reconstituted actin cortices
journal, January 2013
- Enas, Abu Shah; Kinneret, Keren
- Frontiers in Immunology, Vol. 4
Tracking Retrograde Flow in Keratocytes: News from the Front
journal, March 2005
- Vallotton, Pascal; Danuser, Gaudenz; Bohnet, Sophie
- Molecular Biology of the Cell, Vol. 16, Issue 3
A computational model of ameboid deformation and locomotion
journal, August 1998
- Bottino, Dean C.; Fauci, Lisa J.
- European Biophysics Journal, Vol. 27, Issue 5
An extended Filament Based Lamellipodium Model produces various moving cell shapes in the presence of chemotactic signals
journal, October 2015
- Manhart, Angelika; Oelz, Dietmar; Schmeiser, Christian
- Journal of Theoretical Biology, Vol. 382
Slipping or Gripping? Fluorescent Speckle Microscopy in Fish Keratocytes Reveals Two Different Mechanisms for Generating a Retrograde Flow of Actin
journal, February 2005
- Jurado, Carlos; Haserick, John R.; Lee, Juliet
- Molecular Biology of the Cell, Vol. 16, Issue 2
The Shape of Motile Cells
journal, September 2009
- Mogilner, Alex; Keren, Kinneret
- Current Biology, Vol. 19, Issue 17
Onset of Collective and Cohesive Motion
journal, January 2004
- Grégoire, Guillaume; Chaté, Hugues
- Physical Review Letters, Vol. 92, Issue 2
Modeling Elasticity in Crystal Growth
journal, June 2002
- Elder, K. R.; Katakowski, Mark; Haataja, Mikko
- Physical Review Letters, Vol. 88, Issue 24
Asymmetry between pushing and pulling for crawling cells
journal, February 2013
- Recho, Pierre; Truskinovsky, Lev
- Physical Review E, Vol. 87, Issue 2
Membrane tension feedback on shape and motility of eukaryotic cells
text, January 2015
- Winkler, Benjamin; Aranson, Igor S.; Ziebert, Falko
- arXiv
A phase field model for vesicle–substrate adhesion
journal, November 2009
- Zhang, Jian; Das, Sovan; Du, Qiang
- Journal of Computational Physics, Vol. 228, Issue 20
Emergence of collective modes and tri-dimensional structures from epithelial confinement
journal, May 2014
- Deforet, M.; Hakim, V.; Yevick, H. G.
- Nature Communications, Vol. 5, Issue 1
Analysis of the Actin–Myosin II System in Fish Epidermal Keratocytes: Mechanism of Cell Body Translocation
journal, October 1997
- Svitkina, Tatyana M.; Verkhovsky, Alexander B.; McQuade, Kyle M.
- The Journal of Cell Biology, Vol. 139, Issue 2
Minimal model for spontaneous cell polarization and edge activity in oscillating, rotating and migrating cells
journal, January 2016
- Raynaud, Franck; Ambühl, Mark E.; Gabella, Chiara
- Nature Physics, Vol. 12, Issue 4
Symmetry breaking in reconstituted actin cortices
journal, April 2014
- Abu Shah, Enas; Keren, Kinneret
- eLife, Vol. 3
Simulating the deformation of vesicle membranes under elastic bending energy in three dimensions
journal, March 2006
- Du, Qiang; Liu, Chun; Wang, Xiaoqiang
- Journal of Computational Physics, Vol. 212, Issue 2
Mechanical feedback between membrane tension and dynamics
journal, October 2012
- Gauthier, Nils C.; Masters, Thomas A.; Sheetz, Michael P.
- Trends in Cell Biology, Vol. 22, Issue 10
Diffuse interface models of locally inextensible vesicles in a viscous fluid
text, January 2013
- Aland, Sebastian; Egerer, Sabine; Lowengrub, John
- arXiv
Modeling Cell Movement and Chemotaxis Using Pseudopod-Based Feedback
journal, January 2011
- Neilson, M. P.; Mackenzie, J. A.; Webb, S. D.
- SIAM Journal on Scientific Computing, Vol. 33, Issue 3
Contraction-Driven Cell Motility
journal, September 2013
- Recho, P.; Putelat, T.; Truskinovsky, L.
- Physical Review Letters, Vol. 111, Issue 10
A Mechanistic Collective Cell Model for Epithelial Colony Growth and Contact Inhibition
journal, October 2015
- Aland, Sebastian; Hatzikirou, Haralambos; Lowengrub, John
- Biophysical Journal, Vol. 109, Issue 7
Nonlinear Study of Symmetry Breaking in Actin Gels: Implications for Cellular Motility
journal, February 2008
- John, Karin; Peyla, Philippe; Kassner, Klaus
- Physical Review Letters, Vol. 100, Issue 6
An asymmetry between pushing and pulling for crawling cells
text, January 2013
- Recho, Pierre; Truskinovsky, Lev
- arXiv
Macroscopic dynamics of polar nematic liquid crystals
journal, August 2006
- Brand, Helmut R.; Pleiner, Harald; Ziebert, Falko
- Physical Review E, Vol. 74, Issue 2
Self-Propelled Nanomotors Autonomously Seek and Repair Cracks
journal, September 2015
- Li, Jinxing; Shklyaev, Oleg E.; Li, Tianlong
- Nano Letters, Vol. 15, Issue 10
Stochastic dynamics of adhesion clusters under shared constant force and with rebinding
journal, November 2004
- Erdmann, Thorsten; Schwarz, Ulrich S.
- The Journal of Chemical Physics, Vol. 121, Issue 18
Study on Multicellular Systems Using a Phase Field Model
journal, April 2012
- Nonomura, Makiko
- PLoS ONE, Vol. 7, Issue 4
Probing and repairing damaged surfaces with nanoparticle-containing microcapsules
journal, January 2012
- Kratz, Katrina; Narasimhan, Amrit; Tangirala, Ravisubhash
- Nature Nanotechnology, Vol. 7, Issue 2
Modeling cell shape and dynamics on micropatterns
journal, February 2016
- Albert, Philipp J.; Schwarz, Ulrich S.
- Cell Adhesion & Migration, Vol. 10, Issue 5
Reversible and dissipative macroscopic contributions to the stress tensor: Active or passive?
journal, September 2014
- Brand, H. R.; Pleiner, H.; Svenšek, D.
- The European Physical Journal E, Vol. 37, Issue 9
The moving boundary node method: A level set-based, finite volume algorithm with applications to cell motility
journal, September 2010
- Wolgemuth, Charles W.; Zajac, Mark
- Journal of Computational Physics, Vol. 229, Issue 19
Model of Polarization and Bistability of Cell Fragments
journal, December 2007
- Kozlov, Michael M.; Mogilner, Alex
- Biophysical Journal, Vol. 93, Issue 11
Effect of Adhesion Geometry and Rigidity on Cellular Force Distributions
journal, July 2009
- Bischofs, Ilka B.; Schmidt, Sebastian S.; Schwarz, Ulrich S.
- Physical Review Letters, Vol. 103, Issue 4
A Level Set Approach for Computing Solutions to Incompressible Two-Phase Flow
journal, September 1994
- Sussman, Mark; Smereka, Peter; Osher, Stanley
- Journal of Computational Physics, Vol. 114, Issue 1
Traveling and Resting Crystals in Active Systems
journal, February 2013
- Menzel, Andreas M.; Löwen, Hartmut
- Physical Review Letters, Vol. 110, Issue 5
Viscous-Fingering-Like Instability of Cell Fragments
journal, June 2008
- Callan-Jones, A. C.; Joanny, J. -F.; Prost, J.
- Physical Review Letters, Vol. 100, Issue 25
A continuum model of epithelial spreading
journal, January 2013
- Köpf, Michael H.; Pismen, Len M.
- Soft Matter, Vol. 9, Issue 14
Learning From Nature: Synthesis and Characterization of Longitudinal Polymer Gradient Materials Inspired by Mussel Byssus Threads
journal, December 2011
- Claussen, Kai U.; Giesa, Reiner; Scheibel, Thomas
- Macromolecular Rapid Communications, Vol. 33, Issue 3
Spontaneous Splay Phases in Polar Nematic Liquid Crystals
journal, June 1989
- Pleiner, H.; Brand, H. R.
- Europhysics Letters (EPL), Vol. 9, Issue 3
Mathematical model for self-propelled droplets driven by interfacial tension
journal, March 2016
- Nagai, Ken H.; Tachibana, Kunihito; Tobe, Yuta
- The Journal of Chemical Physics, Vol. 144, Issue 11
Mechanism of shape determination in motile cells
journal, May 2008
- Keren, Kinneret; Pincus, Zachary; Allen, Greg M.
- Nature, Vol. 453, Issue 7194
Modeling cellular deformations using the level set formalism
journal, January 2008
- Yang, Liu; Effler, Janet C.; Kutscher, Brett L.
- BMC Systems Biology, Vol. 2, Issue 1
Self-polarization and directional motility of cytoplasm
journal, January 1999
- Verkhovsky, Alexander B.; Svitkina, Tatyana M.; Borisy, Gary G.
- Current Biology, Vol. 9, Issue 1
Emergence and Persistence of Collective Cell Migration on Small Circular Micropatterns
journal, June 2015
- Segerer, Felix J.; Thüroff, Florian; Piera Alberola, Alicia
- Physical Review Letters, Vol. 114, Issue 22
Amoeboid Swimming: A Generic Self-Propulsion of Cells in Fluids by Means of Membrane Deformations
journal, November 2013
- Farutin, Alexander; Rafaï, Salima; Dysthe, Dag Kristian
- Physical Review Letters, Vol. 111, Issue 22
Designing mechano-responsive microcapsules that undergo self-propelled motion
journal, January 2012
- Kolmakov, German V.; Schaefer, Alexander; Aranson, Igor
- Soft Matter, Vol. 8, Issue 1
Multiple scale model for cell migration in monolayers: Elastic mismatch between cells enhances motility
journal, July 2015
- Palmieri, Benoit; Bresler, Yony; Wirtz, Denis
- Scientific Reports, Vol. 5, Issue 1
A minimal physical model captures the shapes of crawling cells
journal, January 2015
- Tjhung, E.; Tiribocchi, A.; Marenduzzo, D.
- Nature Communications, Vol. 6, Issue 1
Large-Scale Chaos and Fluctuations in Active Nematics
journal, July 2014
- Ngo, Sandrine; Peshkov, Anton; Aranson, Igor S.
- Physical Review Letters, Vol. 113, Issue 3
Soft deformable self-propelled particles
journal, September 2012
- Menzel, A. M.; Ohta, T.
- EPL (Europhysics Letters), Vol. 99, Issue 5
Renormalization group approach to multiscale simulation of polycrystalline materials using the phase field crystal model
journal, August 2005
- Goldenfeld, Nigel; Athreya, Badrinarayan P.; Dantzig, Jonathan A.
- Physical Review E, Vol. 72, Issue 2
An Extended Filament Based Lamellipodium Model Produces Various Moving Cell Shapes in the Presence of Chemotactic Signals
preprint, January 2015
- Manhart, Angelika; Schmeiser, Christian; Sfakianakis, Nikolaos
- arXiv
Phase field formulations for modeling the Ostwald ripening in two-phase systems
journal, January 1998
- Fan, Danan; Chen, Long-Qing; Chen, S. P.
- Computational Materials Science, Vol. 9, Issue 3-4
Coupling actin dynamics to phase-field in modeling neural growth
journal, January 2015
- Najem, Sara; Grant, Martin
- Soft Matter, Vol. 11, Issue 22
Active gel physics
journal, February 2015
- Prost, J.; Jülicher, F.; Joanny, J-F.
- Nature Physics, Vol. 11, Issue 2
Crawling Cells Can Close Wounds without Purse Strings or Signaling
journal, March 2011
- Lee, Pilhwa; Wolgemuth, Charles W.
- PLoS Computational Biology, Vol. 7, Issue 3
Signaling networks and cell motility: a computational approach using a phase field description
journal, July 2013
- Marth, Wieland; Voigt, Axel
- Journal of Mathematical Biology, Vol. 69, Issue 1
Model for self-polarization and motility of keratocyte fragments
journal, September 2011
- Ziebert, Falko; Swaminathan, Sumanth; Aranson, Igor S.
- Journal of The Royal Society Interface, Vol. 9, Issue 70
Living liquid crystals
journal, January 2014
- Zhou, S.; Sokolov, A.; Lavrentovich, O. D.
- Proceedings of the National Academy of Sciences, Vol. 111, Issue 4
Living Liquid Crystals
journal, January 2014
- Zhou, Shuang; Sokolov, Andrey; Lavrentovich, Oleg D.
- Biophysical Journal, Vol. 106, Issue 2
Stochastic dynamics of adhesion clusters under shared constant force and with rebinding
text, January 2004
- Erdmann, T.; Schwarz, U. S.
- arXiv
Phase-field modeling on morphological landscape of isotactic polystyrene single crystals
journal, July 2005
- Xu, Haijun; Matkar, Rushikesh; Kyu, Thein
- Physical Review E, Vol. 72, Issue 1
Composite polymer systems with control of local substrate elasticity and their effect on cytoskeletal and morphological characteristics of adherent cells
journal, June 2009
- Chou, Szu-Yuan; Cheng, Chao-Min; LeDuc, Philip R.
- Biomaterials, Vol. 30, Issue 18
A mechanism for cell motility by active polar gels
journal, June 2015
- Marth, W.; Praetorius, S.; Voigt, A.
- Journal of The Royal Society Interface, Vol. 12, Issue 107
Transient Frictional Slip between Integrin and the ECM in Focal Adhesions under Myosin II Tension
journal, July 2010
- Aratyn-Schaus, Yvonne; Gardel, Margaret L.
- Current Biology, Vol. 20, Issue 13
Generic theory of active polar gels: a paradigm for cytoskeletal dynamics
journal, January 2005
- Kruse, K.; Joanny, J. F.; Jülicher, F.
- The European Physical Journal E, Vol. 16, Issue 1
Coupling actin flow, adhesion, and morphology in a computational cell motility model
journal, April 2012
- Shao, D.; Levine, H.; Rappel, W. -J.
- Proceedings of the National Academy of Sciences, Vol. 109, Issue 18
Phase-field model for Hele-Shaw flows with arbitrary viscosity contrast. I. Theoretical approach
journal, August 1999
- Folch, R.; Casademunt, J.; Hernández-Machado, A.
- Physical Review E, Vol. 60, Issue 2
Active behavior of the Cytoskeleton
journal, September 2007
- Julicher, F.; Kruse, K.; Prost, J.
- Physics Reports, Vol. 449, Issue 1-3
Mechanism of cell rear retraction in migrating cells
journal, October 2013
- Cramer, Louise P.
- Current Opinion in Cell Biology, Vol. 25, Issue 5
Continuum field description of crack propagation
text, January 2000
- Aranson, I. S.; Kalatsky, V. A.; Vinokur, V. M.
- arXiv
Chemotaxis: A Feedback-Based Computational Model Robustly Predicts Multiple Aspects of Real Cell Behaviour
journal, May 2011
- Neilson, Matthew P.; Veltman, Douwe M.; van Haastert, Peter J. M.
- PLoS Biology, Vol. 9, Issue 5
Computation of geometric partial differential equations and mean curvature flow
journal, April 2005
- Deckelnick, Klaus; Dziuk, Gerhard; Elliott, Charles M.
- Acta Numerica, Vol. 14
Causes of retrograde flow in fish keratocytes: Causes of Retrograde Flow in Fish Keratocytes
journal, November 2013
- Fuhs, Thomas; Goegler, Michael; Brunner, Claudia A.
- Cytoskeleton, Vol. 71, Issue 1
A microscopic field theoretical approach for active systems
journal, July 2016
- Alaimo, F.; Praetorius, S.; Voigt, A.
- New Journal of Physics, Vol. 18, Issue 8
The composition and dynamics of cell-substratum adhesions in locomoting fish keratocytes
journal, November 1997
- Lee, Juliet; Jacobson, Ken
- Journal of Cell Science, Vol. 110, Issue 22
A mechanical function of myosin II in cell motility
journal, January 1995
- Jay, Patrick Y.; Pham, Peter A.; Wong, Scott A.
- Journal of Cell Science, Vol. 108, Issue 1
Works referencing / citing this record:
Phase-Field Modeling of Individual and Collective Cell Migration
journal, December 2019
- Moure, Adrian; Gomez, Hector
- Archives of Computational Methods in Engineering
Stability of Contraction-Driven Cell Motion
text, January 2021
- Safsten, C. Alex; Rybalko, Volodymyr; Berlyand, Leonid
- arXiv
Modeling random crawling, membrane deformation and intracellular polarity of motile amoeboid cells
text, January 2020
- Alonso, Sergio; Stange, Maike; Beta, Carsten
- Universität Potsdam
Non-Gaussianity, population heterogeneity, and transient superdiffusion in the spreading dynamics of amoeboid cells
journal, January 2018
- Cherstvy, Andrey G.; Nagel, Oliver; Beta, Carsten
- Physical Chemistry Chemical Physics, Vol. 20, Issue 35
Tuning Cell Motility via Cell Tension with a Mechanochemical Cell Migration Model
journal, June 2020
- Tao, Kuan; Wang, Jing; Kuang, Xiangyu
- Biophysical Journal, Vol. 118, Issue 12
Modeling the mechanosensitivity of fast-crawling cells on cyclically stretched substrates
journal, January 2019
- Molina, John J.; Yamamoto, Ryoichi
- Soft Matter, Vol. 15, Issue 4
Spontaneous spatiotemporal ordering of shape oscillations enhances cell migration
journal, January 2019
- Campo, Matteo; Schnyder, Simon K.; Molina, John J.
- Soft Matter, Vol. 15, Issue 24
Rotating lamellipodium waves in polarizing cells
journal, November 2018
- Reeves, Cody; Winkler, Benjamin; Ziebert, Falko
- Communications Physics, Vol. 1, Issue 1
Substrate-rigidity dependent migration of an idealized twitching bacterium
journal, March 2019
- Simsek, Ahmet Nihat; Braeutigam, Andrea; Koch, Matthias D.
- Soft Matter
A Stochastic Modelling Framework for Single Cell Migration: Coupling Contractility and Focal Adhesions
journal, August 2020
- Uatay, Aydar
- Symmetry, Vol. 12, Issue 8
Modeling random crawling, membrane deformation and intracellular polarity of motile amoeboid cells
journal, August 2018
- Alonso, Sergio; Stange, Maike; Beta, Carsten
- PLOS ONE, Vol. 13, Issue 8
Modeling random crawling, membrane deformation and intracellular polarity of motile amoeboid cells
journal, August 2018
- Alonso, Sergio; Stange, Maike; Beta, Carsten
- PLOS ONE, Vol. 13, Issue 8
Modeling the Mechanosensitivity of Fast-Crawling Cells on Cyclically Stretched Substrates
text, January 2018
- Molina, John J.; Yamamoto, Ryoichi
- arXiv
Cellular Response to Surface Morphology: Electrospinning and Computational Modeling
journal, October 2018
- Denchai, Anna; Tartarini, Daniele; Mele, Elisa
- Frontiers in Bioengineering and Biotechnology, Vol. 6
Tuning cell motility via cell tension with a mechanochemical cell migration model
journal, November 2019
- Tao, K.; Wang, J.; Kuang, X.
- Biophysical Journal
Cellular Response to Surface Morphology: Electrospinning and Computational Modeling
journal, October 2018
- Denchai, Anna; Tartarini, Daniele; Mele, Elisa
- Frontiers in Bioengineering and Biotechnology, Vol. 6
Three-dimensional simulation of obstacle-mediated chemotaxis
journal, May 2018
- Moure, Adrian; Gomez, Hector
- Biomechanics and Modeling in Mechanobiology, Vol. 17, Issue 5
Substrate-rigidity dependent migration of an idealized twitching bacterium
journal, January 2019
- Simsek, Ahmet Nihat; Braeutigam, Andrea; Koch, Matthias D.
- Soft Matter, Vol. 15, Issue 30
Confinement and substrate topography control cell migration in a 3D computational model
journal, July 2019
- Winkler, Benjamin; Aranson, Igor S.; Ziebert, Falko
- Communications Physics, Vol. 2, Issue 1
Controlled Propagation and Jamming of a Delamination Front
preprint, January 2020
- Kothari, Mrityunjay; Lemon, Zoë S.; Roth, Christine
- arXiv
Tuning Cell Motility via Cell Tension with a Mechanochemical Cell Migration Model
journal, June 2020
- Tao, Kuan; Wang, Jing; Kuang, Xiangyu
- Biophysical Journal, Vol. 118, Issue 12
Crawling and turning in a minimal reaction-diffusion cell motility model: Coupling cell shape and biochemistry
journal, January 2017
- Camley, Brian A.; Zhao, Yanxiang; Li, Bo
- Physical Review E, Vol. 95, Issue 1
Computational models for active matter
text, January 2019
- Shaebani, M. Reza; Wysocki, Adam; Winkler, Roland G.
- arXiv