DOE PAGES title logo U.S. Department of Energy
Office of Scientific and Technical Information

Title: Dual Regulation of Gene Expression Mediated by Extended MAPK Activation and Salicylic Acid Contributes to Robust Innate Immunity in Arabidopsis thaliana

Abstract

Network robustness is a crucial property of the plant immune signaling network because pathogens are under a strong selection pressure to perturb plant network components to dampen plant immune responses. Nevertheless, modulation of network robustness is an area of network biology that has rarely been explored. While two modes of plant immunity, Effector-Triggered Immunity (ETI) and Pattern-Triggered Immunity (PTI), extensively share signaling machinery, the network output is much more robust against perturbations during ETI than PTI, suggesting modulation of network robustness. Here, we report a molecular mechanism underlying the modulation of the network robustness in Arabidopsis thaliana. The salicylic acid (SA) signaling sector regulates a major portion of the plant immune response and is important in immunity against biotrophic and hemibiotrophic pathogens. In Arabidopsis, SA signaling was required for the proper regulation of the vast majority of SA-responsive genes during PTI. However, during ETI, regulation of most SA-responsive genes, including the canonical SA marker gene PR1, could be controlled by SA-independent mechanisms as well as by SA. The activation of the two immune-related MAPKs, MPK3 and MPK6, persisted for several hours during ETI but less than one hour during PTI. Sustained MAPK activation was sufficient to confer SA-independent regulation ofmore » most SA-responsive genes. Furthermore, the MPK3 and SA signaling sectors were compensatory to each other for inhibition of bacterial growth as well as for PR1 expression during ETI. These results indicate that the duration of the MAPK activation is a critical determinant for modulation of robustness of the immune signaling network. Our findings with the plant immune signaling network imply that the robustness level of a biological network can be modulated by the activities of network components.« less

Authors:
 [1];  [2];  [3];  [4];  [5];  [3];  [3];  [6];  [3]
  1. Max Planck Institute for Plant Breeding Research, Cologne (Germany); University of Minnesota, Minneapolis, MN (United States)
  2. Max Planck Institute for Plant Breeding Research, Cologne (Germany)
  3. University of Minnesota, Minneapolis, MN (United States)
  4. University of Minnesota, Minneapolis, MN (United States); Institute for Innovation, Ajinomoto Co., Inc., Kawasaki (Japan)
  5. Chicago State University, IL (United States)
  6. National Institutes of Natural Sciences, Okazaki (Japan)
Publication Date:
Research Org.:
Univ. of Minnesota, Minneapolis, MN (United States)
Sponsoring Org.:
USDOE Office of Science (SC), Basic Energy Sciences (BES). Chemical Sciences, Geosciences & Biosciences Division (CSGB); Max Planck Society; National Science Foundation (NSF); Japan Society for the Promotion of Science (JSPS)
OSTI Identifier:
1904660
Grant/Contract Number:  
FG02-05ER15670; MCB-0918908; IOS-1121425
Resource Type:
Accepted Manuscript
Journal Name:
PLoS Genetics
Additional Journal Information:
Journal Volume: 9; Journal Issue: 12; Journal ID: ISSN 1553-7404
Publisher:
Public Library of Science
Country of Publication:
United States
Language:
English
Subject:
59 BASIC BIOLOGICAL SCIENCES; MAPK signaling cascades; gene regulation; leaves; Arabidopsis thaliana; signaling networks; gene expression; plant disease resistance; seedings

Citation Formats

Tsuda, Kenichi, Mine, Akira, Bethke, Gerit, Igarashi, Daisuke, Botanga, Christopher J., Tsuda, Yayoi, Glazebrook, Jane, Sato, Masanao, and Katagiri, Fumiaki. Dual Regulation of Gene Expression Mediated by Extended MAPK Activation and Salicylic Acid Contributes to Robust Innate Immunity in Arabidopsis thaliana. United States: N. p., 2013. Web. doi:10.1371/journal.pgen.1004015.
Tsuda, Kenichi, Mine, Akira, Bethke, Gerit, Igarashi, Daisuke, Botanga, Christopher J., Tsuda, Yayoi, Glazebrook, Jane, Sato, Masanao, & Katagiri, Fumiaki. Dual Regulation of Gene Expression Mediated by Extended MAPK Activation and Salicylic Acid Contributes to Robust Innate Immunity in Arabidopsis thaliana. United States. https://doi.org/10.1371/journal.pgen.1004015
Tsuda, Kenichi, Mine, Akira, Bethke, Gerit, Igarashi, Daisuke, Botanga, Christopher J., Tsuda, Yayoi, Glazebrook, Jane, Sato, Masanao, and Katagiri, Fumiaki. Thu . "Dual Regulation of Gene Expression Mediated by Extended MAPK Activation and Salicylic Acid Contributes to Robust Innate Immunity in Arabidopsis thaliana". United States. https://doi.org/10.1371/journal.pgen.1004015. https://www.osti.gov/servlets/purl/1904660.
@article{osti_1904660,
title = {Dual Regulation of Gene Expression Mediated by Extended MAPK Activation and Salicylic Acid Contributes to Robust Innate Immunity in Arabidopsis thaliana},
author = {Tsuda, Kenichi and Mine, Akira and Bethke, Gerit and Igarashi, Daisuke and Botanga, Christopher J. and Tsuda, Yayoi and Glazebrook, Jane and Sato, Masanao and Katagiri, Fumiaki},
abstractNote = {Network robustness is a crucial property of the plant immune signaling network because pathogens are under a strong selection pressure to perturb plant network components to dampen plant immune responses. Nevertheless, modulation of network robustness is an area of network biology that has rarely been explored. While two modes of plant immunity, Effector-Triggered Immunity (ETI) and Pattern-Triggered Immunity (PTI), extensively share signaling machinery, the network output is much more robust against perturbations during ETI than PTI, suggesting modulation of network robustness. Here, we report a molecular mechanism underlying the modulation of the network robustness in Arabidopsis thaliana. The salicylic acid (SA) signaling sector regulates a major portion of the plant immune response and is important in immunity against biotrophic and hemibiotrophic pathogens. In Arabidopsis, SA signaling was required for the proper regulation of the vast majority of SA-responsive genes during PTI. However, during ETI, regulation of most SA-responsive genes, including the canonical SA marker gene PR1, could be controlled by SA-independent mechanisms as well as by SA. The activation of the two immune-related MAPKs, MPK3 and MPK6, persisted for several hours during ETI but less than one hour during PTI. Sustained MAPK activation was sufficient to confer SA-independent regulation of most SA-responsive genes. Furthermore, the MPK3 and SA signaling sectors were compensatory to each other for inhibition of bacterial growth as well as for PR1 expression during ETI. These results indicate that the duration of the MAPK activation is a critical determinant for modulation of robustness of the immune signaling network. Our findings with the plant immune signaling network imply that the robustness level of a biological network can be modulated by the activities of network components.},
doi = {10.1371/journal.pgen.1004015},
journal = {PLoS Genetics},
number = 12,
volume = 9,
place = {United States},
year = {Thu Dec 12 00:00:00 EST 2013},
month = {Thu Dec 12 00:00:00 EST 2013}
}

Works referenced in this record:

MAP Kinase Cascades in Arabidopsis Innate Immunity
journal, January 2012

  • Rasmussen, Magnus W.; Roux, Milena; Petersen, Morten
  • Frontiers in Plant Science, Vol. 3
  • DOI: 10.3389/fpls.2012.00169

How to build a pathogen detector: structural basis of NB-LRR function
journal, August 2012


Robustness: mechanisms and consequences
journal, September 2009


Design principles for robust biochemical reaction networks: What works, what cannot work, and what might almost work
journal, May 2011


Protein kinase signaling networks in plant innate immunity
journal, October 2011

  • Tena, Guillaume; Boudsocq, Marie; Sheen, Jen
  • Current Opinion in Plant Biology, Vol. 14, Issue 5
  • DOI: 10.1016/j.pbi.2011.05.006

Arabidopsis EDS1 Connects Pathogen Effector Recognition to Cell Compartment-Specific Immune Responses
journal, December 2011


Cell Death Mediated by MAPK Is Associated with Hydrogen Peroxide Production in Arabidopsis
journal, January 2002

  • Ren, Dongtao; Yang, Heping; Zhang, Shuqun
  • Journal of Biological Chemistry, Vol. 277, Issue 1
  • DOI: 10.1074/jbc.M109495200

Direct Ubiquitination of Pattern Recognition Receptor FLS2 Attenuates Plant Innate Immunity
journal, June 2011


An efficient Agrobacterium-mediated transient transformation of Arabidopsis: An efficient transient transformation
journal, November 2011


The type III effector HopF2 Pto targets Arabidopsis RIN4 protein to promote Pseudomonas syringae virulence
journal, January 2010

  • Wilton, Mike; Subramaniam, Rajagopal; Elmore, James
  • Proceedings of the National Academy of Sciences, Vol. 107, Issue 5
  • DOI: 10.1073/pnas.0904739107

Plant Innate Immunity: Perception of Conserved Microbial Signatures
journal, June 2012


Bacterial virulence effectors and their activities
journal, August 2010

  • Hann, Dagmar R.; Gimenez-Ibanez, Selena; Rathjen, John P.
  • Current Opinion in Plant Biology, Vol. 13, Issue 4
  • DOI: 10.1016/j.pbi.2010.04.003

The peptide growth factor, phytosulfokine, attenuates pattern-triggered immunity
journal, May 2012


Comparing signaling mechanisms engaged in pattern-triggered and effector-triggered immunity
journal, August 2010


The HSF-like Transcription Factor TBF1 Is a Major Molecular Switch for Plant Growth-to-Defense Transition
journal, January 2012

  • Pajerowska-Mukhtar, Karolina M.; Wang, Wei; Tada, Yasuomi
  • Current Biology, Vol. 22, Issue 2
  • DOI: 10.1016/j.cub.2011.12.015

A fungal-responsive MAPK cascade regulates phytoalexin biosynthesis in Arabidopsis
journal, April 2008

  • Ren, Dongtao; Liu, Yidong; Yang, Kwang-Yeol
  • Proceedings of the National Academy of Sciences, Vol. 105, Issue 14
  • DOI: 10.1073/pnas.0711301105

Bacterial disease resistance in Arabidopsis through flagellin perception
journal, April 2004

  • Zipfel, Cyril; Robatzek, Silke; Navarro, Lionel
  • Nature, Vol. 428, Issue 6984
  • DOI: 10.1038/nature02485

A flagellin-induced complex of the receptor FLS2 and BAK1 initiates plant defence
journal, July 2007

  • Chinchilla, Delphine; Zipfel, Cyril; Robatzek, Silke
  • Nature, Vol. 448, Issue 7152
  • DOI: 10.1038/nature05999

A Pseudomonas syringae Effector Inactivates MAPKs to Suppress PAMP-Induced Immunity in Plants
journal, May 2007


Isochorismate synthase is required to synthesize salicylic acid for plant defence
journal, November 2001

  • Wildermuth, Mary C.; Dewdney, Julia; Wu, Gang
  • Nature, Vol. 414, Issue 6863
  • DOI: 10.1038/35107108

The plant immune system
journal, November 2006

  • Jones, Jonathan D. G.; Dangl, Jeffery L.
  • Nature, Vol. 444, Issue 7117
  • DOI: 10.1038/nature05286

The A. thaliana disease resistance gene RPS2 encodes a protein containing a nucleotide-binding site and leucine-rich repeats
journal, September 1994


Network Properties of Robust Immunity in Plants
journal, December 2009


Stress hormone-independent activation and nuclear translocation of mitogen-activated protein kinases in Arabidopsis thaliana during ozone exposure
journal, September 2004


A Pseudomonas syringae ADP-Ribosyltransferase Inhibits Arabidopsis Mitogen-Activated Protein Kinase Kinases
journal, June 2010


Coronatine Promotes Pseudomonas syringae Virulence in Plants by Activating a Signaling Cascade that Inhibits Salicylic Acid Accumulation
journal, June 2012


VIP1 response elements mediate mitogen-activated protein kinase 3-induced stress gene expression
journal, October 2009

  • Pitzschke, Andrea; Djamei, Armin; Teige, Markus
  • Proceedings of the National Academy of Sciences, Vol. 106, Issue 43
  • DOI: 10.1073/pnas.0905599106

Dynamic Changes in the Localization of MAPK Cascade Components Controlling Pathogenesis-related (PR) Gene Expression during Innate Immunity in Parsley
journal, May 2004

  • Lee, Justin; Rudd, Jason J.; Macioszek, Violetta K.
  • Journal of Biological Chemistry, Vol. 279, Issue 21
  • DOI: 10.1074/jbc.M401099200

The Arabidopsis NPR1 Gene That Controls Systemic Acquired Resistance Encodes a Novel Protein Containing Ankyrin Repeats
journal, January 1997


Fls2
journal, June 2000


Sustained versus Transient ERK1/2 Signaling Underlies the Anti- and Proapoptotic Effects of Oxidative Stress in Human RPE Cells
journal, October 2006

  • Glotin, Anne-Lise; Calipel, Armelle; Brossas, Jean-Yves
  • Investigative Opthalmology & Visual Science, Vol. 47, Issue 10
  • DOI: 10.1167/iovs.06-0297

Arabidopsis snc2-1D Activates Receptor-Like Protein-Mediated Immunity Transduced through WRKY70
journal, September 2010


Cluster analysis and display of genome-wide expression patterns
journal, December 1998

  • Eisen, M. B.; Spellman, P. T.; Brown, P. O.
  • Proceedings of the National Academy of Sciences, Vol. 95, Issue 25
  • DOI: 10.1073/pnas.95.25.14863

How do plants achieve immunity? Defence without specialized immune cells
journal, January 2012

  • Spoel, Steven H.; Dong, Xinnian
  • Nature Reviews Immunology, Vol. 12, Issue 2
  • DOI: 10.1038/nri3141

Emerging functions for plant MAP kinase phosphatases
journal, June 2010


Exploration, normalization, and summaries of high density oligonucleotide array probe level data
journal, April 2003


Salicylic Acid, a Multifaceted Hormone to Combat Disease
journal, September 2009


Stomatal Development and Patterning Are Regulated by Environmentally Responsive Mitogen-Activated Protein Kinases in Arabidopsis
journal, January 2007


The Coronatine Toxin of Pseudomonas syringae Is a Multifunctional Suppressor of Arabidopsis Defense
journal, November 2012


How filamentous pathogens co-opt plants: the ins and outs of fungal effectors
journal, August 2011

  • de Jonge, Ronnie; Bolton, Melvin D.; Thomma, Bart PHJ
  • Current Opinion in Plant Biology, Vol. 14, Issue 4
  • DOI: 10.1016/j.pbi.2011.03.005

Mitogen-Activated Protein Kinases 3 and 6 Are Required for Full Priming of Stress Responses in Arabidopsis thaliana    
journal, March 2009

  • Beckers, Gerold J. M.; Jaskiewicz, Michal; Liu, Yidong
  • The Plant Cell, Vol. 21, Issue 3
  • DOI: 10.1105/tpc.108.062158

A Genomic Approach to Identify Regulatory Nodes in the Transcriptional Network of Systemic Acquired Resistance in Plants
journal, January 2006


Specificity of MAP Kinase Signaling in Yeast Differentiation Involves Transient versus Sustained MAPK Activation
journal, September 2001


Interplay between MAMP-triggered and SA-mediated defense responses
journal, March 2008


Regulatory interactions between the Hrp type III protein secretion system and coronatine biosynthesis in Pseudomonas syringae pv. tomato DC3000
journal, October 2000


Trojan Horse Strategy in Agrobacterium Transformation: Abusing MAPK Defense Signaling
journal, October 2007


Structure and function of the feed-forward loop network motif
journal, October 2003

  • Mangan, S.; Alon, U.
  • Proceedings of the National Academy of Sciences, Vol. 100, Issue 21
  • DOI: 10.1073/pnas.2133841100

Understanding the Plant Immune System
journal, December 2010

  • Katagiri, Fumiaki; Tsuda, Kenichi
  • Molecular Plant-Microbe Interactions®, Vol. 23, Issue 12
  • DOI: 10.1094/MPMI-04-10-0099

Bacterial Effector HopF2 Suppresses Arabidopsis Innate Immunity at the Plasma Membrane
journal, May 2011

  • Wu, Shujing; Lu, Dongping; Kabbage, Mehdi
  • Molecular Plant-Microbe Interactions®, Vol. 24, Issue 5
  • DOI: 10.1094/MPMI-07-10-0150

Exploring the evolutionary path of plant MAPK networks
journal, September 2012


Closing the Circle on the Discovery of Genes Encoding Hrp Regulon Members and Type III Secretion System Effectors in the Genomes of Three Model Pseudomonas syringae Strains
journal, November 2006

  • Lindeberg, Magdalen; Cartinhour, Samuel; Myers, Christopher R.
  • Molecular Plant-Microbe Interactions®, Vol. 19, Issue 11
  • DOI: 10.1094/MPMI-19-1151

Ligand-induced endocytosis of the pattern recognition receptor FLS2 in Arabidopsis
journal, March 2006