Pests, diseases, and aridity have shaped the genome of Corymbia citriodora
Abstract
Corymbia citriodora is a member of the predominantly Southern Hemisphere Myrtaceae family, which includes the eucalypts (Eucalyptus, Corymbia and Angophora; ~800 species). Corymbia is grown for timber, pulp and paper, and essential oils in Australia, South Africa, Asia, and Brazil, maintaining a high-growth rate under marginal conditions due to drought, poor-quality soil, and biotic stresses. To dissect the genetic basis of these desirable traits, we sequenced and assembled the 408 Mb genome of Corymbia citriodora, anchored into eleven chromosomes. Comparative analysis with Eucalyptus grandis reveals high synteny, although the two diverged approximately 60 million years ago and have different genome sizes (408 vs 641 Mb), with few large intra-chromosomal rearrangements. C. citriodora shares an ancient whole-genome duplication event with E. grandis but has undergone tandem gene family expansions related to terpene biosynthesis, innate pathogen resistance, and leaf wax formation, enabling their successful adaptation to biotic/abiotic stresses and arid conditions of the Australian continent.
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- HudsonAlpha Inst. for Biotechnology, Huntsville, AL (United States); Univ. of Queensland, Brisbane, QLD (Australia)
- Southern Cross Univ., Lismore, NSW (Australia). Southern Cross Plant Science
- Univ. of Tasmania, Hobart, TAS (Australia). School of Natural Sciences
- Univ. of Tasmania, Hobart, TAS (Australia). School of Natural Sciences; Univ. of Tasmania, Hobart, TAS (Australia). ARC Training Centre for Forest Value; Scion, Rotorua (New Zealand)
- Univ. of the Sunshine Coast, Sippy Downs, QLD (Australia). Forest Industries Research Centre
- Univ. of Tasmania, Hobart, TAS (Australia). School of Natural Sciences; Univ. of Tasmania, Hobart, TAS (Australia). ARC Training Centre for Forest Value
- EMBRAPA Genetic Resources and Biotechnology, Brasília (Brazil)
- Southern Cross Univ., Lismore, NSW (Australia). Southern Cross Plant Science; Inst. of Precision Medicine & Bioinformatics, Camperdown, NSW (Australia)
- HudsonAlpha Inst. for Biotechnology, Huntsville, AL (United States)
- USDOE Joint Genome Institute (JGI), Berkeley, CA (United States)
- Univ. of Queensland, Brisbane, QLD (Australia)
- EMBRAPA Genetic Resources and Biotechnology, Brasília (Brazil); Universidade Catolica de Brasilia, Taguatinga (Brazil). Genomic Science Program
- Univ. of Queensland, Brisbane, QLD (Australia); Joint BioEnergy Institute (JBEI), Emeryville, CA (United States)
- HudsonAlpha Inst. for Biotechnology, Huntsville, AL (United States); USDOE Joint Genome Institute (JGI), Berkeley, CA (United States)
- Publication Date:
- Research Org.:
- Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)
- Sponsoring Org.:
- USDOE Office of Science (SC), Biological and Environmental Research (BER). Biological Systems Science Division
- OSTI Identifier:
- 1816185
- Alternate Identifier(s):
- OSTI ID: 1827339
- Grant/Contract Number:
- AC02-05CH11231
- Resource Type:
- Accepted Manuscript
- Journal Name:
- Communications Biology
- Additional Journal Information:
- Journal Volume: 4; Journal Issue: 1; Journal ID: ISSN 2399-3642
- Publisher:
- Springer Nature
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 59 BASIC BIOLOGICAL SCIENCES; Forestry; Plant evolution
Citation Formats
Healey, Adam L., Shepherd, Mervyn, King, Graham J., Butler, Jakob B., Freeman, Jules S., Lee, David J., Potts, Brad M., Silva-Junior, Orzenil B., Baten, Abdul, Jenkins, Jerry, Shu, Shengqiang, Lovell, John T., Sreedasyam, Avinash, Grimwood, Jane, Furtado, Agnelo, Grattapaglia, Dario, Barry, Kerrie W., Hundley, Hope, Simmons, Blake A., Schmutz, Jeremy, Vaillancourt, René E., and Henry, Robert J. Pests, diseases, and aridity have shaped the genome of Corymbia citriodora. United States: N. p., 2021.
Web. doi:10.1038/s42003-021-02009-0.
Healey, Adam L., Shepherd, Mervyn, King, Graham J., Butler, Jakob B., Freeman, Jules S., Lee, David J., Potts, Brad M., Silva-Junior, Orzenil B., Baten, Abdul, Jenkins, Jerry, Shu, Shengqiang, Lovell, John T., Sreedasyam, Avinash, Grimwood, Jane, Furtado, Agnelo, Grattapaglia, Dario, Barry, Kerrie W., Hundley, Hope, Simmons, Blake A., Schmutz, Jeremy, Vaillancourt, René E., & Henry, Robert J. Pests, diseases, and aridity have shaped the genome of Corymbia citriodora. United States. https://doi.org/10.1038/s42003-021-02009-0
Healey, Adam L., Shepherd, Mervyn, King, Graham J., Butler, Jakob B., Freeman, Jules S., Lee, David J., Potts, Brad M., Silva-Junior, Orzenil B., Baten, Abdul, Jenkins, Jerry, Shu, Shengqiang, Lovell, John T., Sreedasyam, Avinash, Grimwood, Jane, Furtado, Agnelo, Grattapaglia, Dario, Barry, Kerrie W., Hundley, Hope, Simmons, Blake A., Schmutz, Jeremy, Vaillancourt, René E., and Henry, Robert J. Mon .
"Pests, diseases, and aridity have shaped the genome of Corymbia citriodora". United States. https://doi.org/10.1038/s42003-021-02009-0. https://www.osti.gov/servlets/purl/1816185.
@article{osti_1816185,
title = {Pests, diseases, and aridity have shaped the genome of Corymbia citriodora},
author = {Healey, Adam L. and Shepherd, Mervyn and King, Graham J. and Butler, Jakob B. and Freeman, Jules S. and Lee, David J. and Potts, Brad M. and Silva-Junior, Orzenil B. and Baten, Abdul and Jenkins, Jerry and Shu, Shengqiang and Lovell, John T. and Sreedasyam, Avinash and Grimwood, Jane and Furtado, Agnelo and Grattapaglia, Dario and Barry, Kerrie W. and Hundley, Hope and Simmons, Blake A. and Schmutz, Jeremy and Vaillancourt, René E. and Henry, Robert J.},
abstractNote = {Corymbia citriodora is a member of the predominantly Southern Hemisphere Myrtaceae family, which includes the eucalypts (Eucalyptus, Corymbia and Angophora; ~800 species). Corymbia is grown for timber, pulp and paper, and essential oils in Australia, South Africa, Asia, and Brazil, maintaining a high-growth rate under marginal conditions due to drought, poor-quality soil, and biotic stresses. To dissect the genetic basis of these desirable traits, we sequenced and assembled the 408 Mb genome of Corymbia citriodora, anchored into eleven chromosomes. Comparative analysis with Eucalyptus grandis reveals high synteny, although the two diverged approximately 60 million years ago and have different genome sizes (408 vs 641 Mb), with few large intra-chromosomal rearrangements. C. citriodora shares an ancient whole-genome duplication event with E. grandis but has undergone tandem gene family expansions related to terpene biosynthesis, innate pathogen resistance, and leaf wax formation, enabling their successful adaptation to biotic/abiotic stresses and arid conditions of the Australian continent.},
doi = {10.1038/s42003-021-02009-0},
journal = {Communications Biology},
number = 1,
volume = 4,
place = {United States},
year = {Mon May 10 00:00:00 EDT 2021},
month = {Mon May 10 00:00:00 EDT 2021}
}
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