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Title: COSORE: A community database for continuous soil respiration and other soil‐atmosphere greenhouse gas flux data

Abstract

Globally, soils store two to three times as much carbon as currently resides in the atmosphere, and it is critical to understand how soil greenhouse gas (GHG) emissions and uptake will respond to ongoing climate change. In particular, the soil-to-atmosphere CO2 flux–commonly though imprecisely termed soil respiration, RS–is one of the largest carbon fluxes in the Earth system. An increasing number of high frequency RS measurements (typically, from an automated system with hourly sampling) have been made over the last two decades; more and more methane measurements are being made with such systems as well. Such high frequency data are an invaluable resource for probing the sensitivities of and controls on GHG fluxes, but presently lack a central database or repository. Here we describe the lightweight, open source COSORE (Continuous SOil REspiration) database, that focuses on automated, continuous and long-term GHG flux datasets, and is intended to serve as a community resource for earth sciences, climate change syntheses, and model evaluation. Contributed datasets are mapped to a single, consistent standard, with metadata on contributors, geographic location, measurement conditions, and ancillary data. The design emphasizes the importance of reproducibility, scientific transparency, and open access to data. While oriented towards continuously measuredmore » RS, the database design accommodates other soil-atmosphere measurements (e.g. ecosystem respiration, chamber-measured net ecosystem exchange, methane fluxes) as well as experimental treatments (heterotrophic only, etc.). We give brief examples of the types of analyses possible using this new community resource and describe its accompanying R software package.« less

Authors:
ORCiD logo [1];  [2];  [3];  [1];  [4];  [5];  [5];  [6];  [7];  [8];  [9];  [10];  [11];  [12];  [13];  [14];  [15];  [16];  [17];  [18] more »;  [19];  [20];  [21];  [22];  [23];  [24];  [25];  [10];  [26];  [27];  [28];  [29];  [30];  [11];  [1];  [31];  [32];  [33];  [34];  [35];  [36];  [37];  [38];  [39];  [4];  [21];  [40];  [20];  [41];  [42];  [16];  [30];  [43];  [44];  [45];  [46];  [47];  [31];  [30];  [36];  [48];  [49];  [50];  [51];  [36];  [52];  [53];  [54];  [55];  [20];  [56];  [57];  [10];  [58];  [10];  [59];  [60];  [34];  [36];  [20];  [61];  [62];  [63];  [10];  [64];  [65];  [66];  [67];  [31];  [20];  [34];  [68];  [69];  [31] « less
  1. Pacific Northwest National Laboratory Joint Global Change Research Institute at the University of Maryland–College Park College Park MD USA
  2. Lawrence Berkeley National Laboratory Berkeley CA USA
  3. Department of Earth System Science Stanford University Stanford CA USA
  4. Climate Change Science Institute and Environmental Sciences Division Oak Ridge National Laboratory Oak Ridge TN USA
  5. Department of Civil and Environmental Engineering University of California Irvine Irvine CA USA
  6. School of Geography and Earth Sciences McMaster University Hamilton Ontario Canada
  7. Departamento de Ecología Pontificia Universidad Católica de Chile Santiago Chile;Instituto de Ecología y Biodiversidad Santiago Chile
  8. Department of Building, Civil and Environmental Engineering Concordia University Montreal QC Canada
  9. Research Institute for Sustainable HumanosphereKyoto University Uji City Kyoto Japan
  10. Department of Environmental Science, Policy, and Management University of California Berkeley CA USA
  11. Faculty of Land and Food Systems University of British Columbia Vancouver BC Canada
  12. Department of Environmental Systems Science Institute of Agricultural Sciences ETH Zurich Zurich Switzerland
  13. Center for Ecosystem Science and Society Northern Arizona University Flagstaff AZ USA
  14. Department of Natural Resources and Environmental Studies Center for Interdisciplinary Research on Ecology and Sustainability National Dong Hwa University Hualien Taiwan
  15. Department of Geological Sciences and Bolin Centre for Climate Research Stockholm University Stockholm Sweden
  16. Department of Evolution, Ecology and Organismal Biology Ohio State University Columbus OH USA
  17. Appalachian Laboratory University of Maryland Center for Environmental Science Frostburg MD USA
  18. Department of Atmospheric and Oceanic Sciences University of Wisconsin‐Madison Madison WI USA
  19. Sustainable Resources ManagementSUNY‐ESF Syracuse NY USA
  20. Max Planck Institute for Biogeochemistry Jena Germany
  21. Eastern Forest Environmental Threat Assessment Center USDA Forest Service Research Triangle Park NC USA
  22. Plants and Ecosystems Department of Biology University of Antwerp Wilrijk Belgium
  23. Department of Biology Virginia Commonwealth University Richmond VA USA
  24. University of California at Irvine Irvine CA USA
  25. Sustainability Double Degree Program Oregon State University Corvallis OR USA
  26. Institute of Ecology College of Urban and Environmental Sciences Peking University Beijing China
  27. Research Faculty of Agriculture Hokkaido University Sapporo Japan
  28. Pacific Northwest National Laboratory Richland WA USA;Smithsonian Environmental Research Center Edgewater MD USA
  29. School of Forest Resources University of Maine Orono ME USA
  30. Department of Forest Ecology and Management Swedish University of Agricultural Sciences Umeå Sweden
  31. Beijing Research & Development Centre for Grass and Environment Beijing Academy of Agriculture and Forestry Sciences Beijing China
  32. The Pennsylvania State University University Park PA USA
  33. Forestry and Forest Products Research Institute Tsukuba‐city Japan
  34. Center for Global Environmental Research National Institute for Environmental Studies Tsukuba Japan
  35. Biology Department San Diego State University San Diego CA USA
  36. Hawkesbury Institute for the Environment Western Sydney University Penrith NSW Australia
  37. School of Environment, Earth and Ecosystem Sciences The Open University Milton Keynes UK
  38. Integrated Life Sciences Virginia Commonwealth University Richmond VA USA
  39. Biological Sciences University of Texas at El Paso El Paso TX USA
  40. School of Geographical Sciences Fujian Normal University Fuzhou P.R. China
  41. University at AlbanyState University of New York New York NY USA
  42. USDA Forest ServiceSouthern Research StationCoweeta Hydrologic Lab Otto NC USA
  43. Department of Ecology and Conservation Biology Texas A&M University College Station TX USA
  44. New York City College of Technology and the Graduate Center The City University of New York New York NY USA
  45. Department of Environmental Science, Policy, and Management University of California Berkeley CA USA;Department of Environmental Studies Macalester College St Paul MN USA
  46. UCD School of Biology and Environmental Science and UCD Earth InstituteUniversity College Dublin Dublin Ireland
  47. Department of Agronomy University of Almería Almería Spain
  48. Department of Environmental Science and Renewable Natural Resources University of Chile Santiago Chile;Institute of Ecology and Biodiversity Santiago Chile
  49. USDA Agricultural Research ServiceForage Seed and Cereal Research Unit Corvallis OR USA
  50. Department of Biology Indiana University Bloomington IN USA
  51. Department of Ecology, Evolution & Organismal Biology Iowa State University Ames IA USA
  52. Institute of Meteorology and Climate Research–Atmospheric Environmental Research KIT‐Campus AlpinKarlsruhe Institute of Technology Garmisch‐Partenkirchen Germany
  53. Department of Applied Physics University of Granada Granada Spain
  54. School of Natural Sciences Botany Department Trinity College Dublin Dublin Ireland
  55. Woods Hole Research Center Falmouth MA USA
  56. Southwest Watershed Research Center USDA‐ARS Tucson AZ USA
  57. Department of Atmospheric and Oceanic Sciences University of California Los Angeles Los Angeles CA USA
  58. Department of Global EcologyCarnegie Institution for Science Stanford CA USA
  59. Field Science Center for Northern Biosphere Hokkaido University Horonobe Japan
  60. Faculty of Agriculture University of Miyazaki Miyazaki Japan
  61. Graduate School of Life and Environmental Sciences Osaka Prefecture University Sakai Japan
  62. Department of Plant and Soil Sciences University of Delaware Newark DE USA
  63. Department of Earth Sciences and Institute for the Study of Earth, Oceans and Space University of New Hampshire Durham NH USA
  64. University of Michigan Biological Station Pellston MI USA
  65. Key Laboratory of Ecosystem Network Observation and Modeling Institute of Geographic Sciences and Natural Resources Research Chinese Academy of Sciences Beijing China
  66. Department of Science, Engineering and Mathematics Cypress College Cypress CA USA
  67. USDA Forest Service International Institute of Tropical Forestry Río Piedras Puerto Rico
  68. School of Soil and Water Conservation Beijing Forestry University Beijing P.R. China
  69. State Key Laboratory of Water Resources and Hydropower Engineering Science Wuhan University Wuhan P.R. China
Publication Date:
Research Org.:
Univ. of Arizona, Tucson, AZ (United States); Terrestrial Ecosystems Research Associates, Corvallis, OR (United States); Pacific Northwest National Laboratory (PNNL), Richland, WA (United States); Oak Ridge National Laboratory (ORNL), Oak Ridge, TN (United States)
Sponsoring Org.:
USDOE Office of Science (SC), Biological and Environmental Research (BER); USDA; National Science Foundation (NSF)
Contributing Org.:
COSORE Team
OSTI Identifier:
1670823
Alternate Identifier(s):
OSTI ID: 1685042; OSTI ID: 1770558; OSTI ID: 1782303; OSTI ID: 1830182
Report Number(s):
PNNL-SA-154095
Journal ID: ISSN 1354-1013
Grant/Contract Number:  
SC0006741; AC02‐05CH11231; FOA‐0000749; FG02‐05ER64048; AC05-76RL01830; AC05-00OR22725; 2072-12620-001; DEB-1457805; DEB-0236502; DEB-0703561; DBI-1457897; DE‐AC02‐05CH11231; DE‐SC0006741; TES‐DE‐FOA‐0000749; DE‐FG02‐05ER64048
Resource Type:
Published Article
Journal Name:
Global Change Biology
Additional Journal Information:
Journal Name: Global Change Biology Journal Volume: 26 Journal Issue: 12; Journal ID: ISSN 1354-1013
Publisher:
Wiley
Country of Publication:
United Kingdom
Language:
English
Subject:
59 BASIC BIOLOGICAL SCIENCES; carbon dioxide; greenhouse gases; methane; open data; open science; soil respiration

Citation Formats

Bond‐Lamberty, Ben, Christianson, Danielle S., Malhotra, Avni, Pennington, Stephanie C., Sihi, Debjani, AghaKouchak, Amir, Anjileli, Hassan, Altaf Arain, M., Armesto, Juan J., Ashraf, Samaneh, Ataka, Mioko, Baldocchi, Dennis, Andrew Black, Thomas, Buchmann, Nina, Carbone, Mariah S., Chang, Shih‐Chieh, Crill, Patrick, Curtis, Peter S., Davidson, Eric A., Desai, Ankur R., Drake, John E., El‐Madany, Tarek S., Gavazzi, Michael, Görres, Carolyn‐Monika, Gough, Christopher M., Goulden, Michael, Gregg, Jillian, Gutiérrez del Arroyo, Omar, He, Jin‐Sheng, Hirano, Takashi, Hopple, Anya, Hughes, Holly, Järveoja, Järvi, Jassal, Rachhpal, Jian, Jinshi, Kan, Haiming, Kaye, Jason, Kominami, Yuji, Liang, Naishen, Lipson, David, Macdonald, Catriona A., Maseyk, Kadmiel, Mathes, Kayla, Mauritz, Marguerite, Mayes, Melanie A., McNulty, Steve, Miao, Guofang, Migliavacca, Mirco, Miller, Scott, Miniat, Chelcy F., Nietz, Jennifer G., Nilsson, Mats B., Noormets, Asko, Norouzi, Hamidreza, O’Connell, Christine S., Osborne, Bruce, Oyonarte, Cecilio, Pang, Zhuo, Peichl, Matthias, Pendall, Elise, Perez‐Quezada, Jorge F., Phillips, Claire L., Phillips, Richard P., Raich, James W., Renchon, Alexandre A., Ruehr, Nadine K., Sánchez‐Cañete, Enrique P., Saunders, Matthew, Savage, Kathleen E., Schrumpf, Marion, Scott, Russell L., Seibt, Ulli, Silver, Whendee L., Sun, Wu, Szutu, Daphne, Takagi, Kentaro, Takagi, Masahiro, Teramoto, Munemasa, Tjoelker, Mark G., Trumbore, Susan, Ueyama, Masahito, Vargas, Rodrigo, Varner, Ruth K., Verfaillie, Joseph, Vogel, Christoph, Wang, Jinsong, Winston, Greg, Wood, Tana E., Wu, Juying, Wutzler, Thomas, Zeng, Jiye, Zha, Tianshan, Zhang, Quan, and Zou, Junliang. COSORE: A community database for continuous soil respiration and other soil‐atmosphere greenhouse gas flux data. United Kingdom: N. p., 2020. Web. doi:10.1111/gcb.15353.
Bond‐Lamberty, Ben, Christianson, Danielle S., Malhotra, Avni, Pennington, Stephanie C., Sihi, Debjani, AghaKouchak, Amir, Anjileli, Hassan, Altaf Arain, M., Armesto, Juan J., Ashraf, Samaneh, Ataka, Mioko, Baldocchi, Dennis, Andrew Black, Thomas, Buchmann, Nina, Carbone, Mariah S., Chang, Shih‐Chieh, Crill, Patrick, Curtis, Peter S., Davidson, Eric A., Desai, Ankur R., Drake, John E., El‐Madany, Tarek S., Gavazzi, Michael, Görres, Carolyn‐Monika, Gough, Christopher M., Goulden, Michael, Gregg, Jillian, Gutiérrez del Arroyo, Omar, He, Jin‐Sheng, Hirano, Takashi, Hopple, Anya, Hughes, Holly, Järveoja, Järvi, Jassal, Rachhpal, Jian, Jinshi, Kan, Haiming, Kaye, Jason, Kominami, Yuji, Liang, Naishen, Lipson, David, Macdonald, Catriona A., Maseyk, Kadmiel, Mathes, Kayla, Mauritz, Marguerite, Mayes, Melanie A., McNulty, Steve, Miao, Guofang, Migliavacca, Mirco, Miller, Scott, Miniat, Chelcy F., Nietz, Jennifer G., Nilsson, Mats B., Noormets, Asko, Norouzi, Hamidreza, O’Connell, Christine S., Osborne, Bruce, Oyonarte, Cecilio, Pang, Zhuo, Peichl, Matthias, Pendall, Elise, Perez‐Quezada, Jorge F., Phillips, Claire L., Phillips, Richard P., Raich, James W., Renchon, Alexandre A., Ruehr, Nadine K., Sánchez‐Cañete, Enrique P., Saunders, Matthew, Savage, Kathleen E., Schrumpf, Marion, Scott, Russell L., Seibt, Ulli, Silver, Whendee L., Sun, Wu, Szutu, Daphne, Takagi, Kentaro, Takagi, Masahiro, Teramoto, Munemasa, Tjoelker, Mark G., Trumbore, Susan, Ueyama, Masahito, Vargas, Rodrigo, Varner, Ruth K., Verfaillie, Joseph, Vogel, Christoph, Wang, Jinsong, Winston, Greg, Wood, Tana E., Wu, Juying, Wutzler, Thomas, Zeng, Jiye, Zha, Tianshan, Zhang, Quan, & Zou, Junliang. COSORE: A community database for continuous soil respiration and other soil‐atmosphere greenhouse gas flux data. United Kingdom. https://doi.org/10.1111/gcb.15353
Bond‐Lamberty, Ben, Christianson, Danielle S., Malhotra, Avni, Pennington, Stephanie C., Sihi, Debjani, AghaKouchak, Amir, Anjileli, Hassan, Altaf Arain, M., Armesto, Juan J., Ashraf, Samaneh, Ataka, Mioko, Baldocchi, Dennis, Andrew Black, Thomas, Buchmann, Nina, Carbone, Mariah S., Chang, Shih‐Chieh, Crill, Patrick, Curtis, Peter S., Davidson, Eric A., Desai, Ankur R., Drake, John E., El‐Madany, Tarek S., Gavazzi, Michael, Görres, Carolyn‐Monika, Gough, Christopher M., Goulden, Michael, Gregg, Jillian, Gutiérrez del Arroyo, Omar, He, Jin‐Sheng, Hirano, Takashi, Hopple, Anya, Hughes, Holly, Järveoja, Järvi, Jassal, Rachhpal, Jian, Jinshi, Kan, Haiming, Kaye, Jason, Kominami, Yuji, Liang, Naishen, Lipson, David, Macdonald, Catriona A., Maseyk, Kadmiel, Mathes, Kayla, Mauritz, Marguerite, Mayes, Melanie A., McNulty, Steve, Miao, Guofang, Migliavacca, Mirco, Miller, Scott, Miniat, Chelcy F., Nietz, Jennifer G., Nilsson, Mats B., Noormets, Asko, Norouzi, Hamidreza, O’Connell, Christine S., Osborne, Bruce, Oyonarte, Cecilio, Pang, Zhuo, Peichl, Matthias, Pendall, Elise, Perez‐Quezada, Jorge F., Phillips, Claire L., Phillips, Richard P., Raich, James W., Renchon, Alexandre A., Ruehr, Nadine K., Sánchez‐Cañete, Enrique P., Saunders, Matthew, Savage, Kathleen E., Schrumpf, Marion, Scott, Russell L., Seibt, Ulli, Silver, Whendee L., Sun, Wu, Szutu, Daphne, Takagi, Kentaro, Takagi, Masahiro, Teramoto, Munemasa, Tjoelker, Mark G., Trumbore, Susan, Ueyama, Masahito, Vargas, Rodrigo, Varner, Ruth K., Verfaillie, Joseph, Vogel, Christoph, Wang, Jinsong, Winston, Greg, Wood, Tana E., Wu, Juying, Wutzler, Thomas, Zeng, Jiye, Zha, Tianshan, Zhang, Quan, and Zou, Junliang. Wed . "COSORE: A community database for continuous soil respiration and other soil‐atmosphere greenhouse gas flux data". United Kingdom. https://doi.org/10.1111/gcb.15353.
@article{osti_1670823,
title = {COSORE: A community database for continuous soil respiration and other soil‐atmosphere greenhouse gas flux data},
author = {Bond‐Lamberty, Ben and Christianson, Danielle S. and Malhotra, Avni and Pennington, Stephanie C. and Sihi, Debjani and AghaKouchak, Amir and Anjileli, Hassan and Altaf Arain, M. and Armesto, Juan J. and Ashraf, Samaneh and Ataka, Mioko and Baldocchi, Dennis and Andrew Black, Thomas and Buchmann, Nina and Carbone, Mariah S. and Chang, Shih‐Chieh and Crill, Patrick and Curtis, Peter S. and Davidson, Eric A. and Desai, Ankur R. and Drake, John E. and El‐Madany, Tarek S. and Gavazzi, Michael and Görres, Carolyn‐Monika and Gough, Christopher M. and Goulden, Michael and Gregg, Jillian and Gutiérrez del Arroyo, Omar and He, Jin‐Sheng and Hirano, Takashi and Hopple, Anya and Hughes, Holly and Järveoja, Järvi and Jassal, Rachhpal and Jian, Jinshi and Kan, Haiming and Kaye, Jason and Kominami, Yuji and Liang, Naishen and Lipson, David and Macdonald, Catriona A. and Maseyk, Kadmiel and Mathes, Kayla and Mauritz, Marguerite and Mayes, Melanie A. and McNulty, Steve and Miao, Guofang and Migliavacca, Mirco and Miller, Scott and Miniat, Chelcy F. and Nietz, Jennifer G. and Nilsson, Mats B. and Noormets, Asko and Norouzi, Hamidreza and O’Connell, Christine S. and Osborne, Bruce and Oyonarte, Cecilio and Pang, Zhuo and Peichl, Matthias and Pendall, Elise and Perez‐Quezada, Jorge F. and Phillips, Claire L. and Phillips, Richard P. and Raich, James W. and Renchon, Alexandre A. and Ruehr, Nadine K. and Sánchez‐Cañete, Enrique P. and Saunders, Matthew and Savage, Kathleen E. and Schrumpf, Marion and Scott, Russell L. and Seibt, Ulli and Silver, Whendee L. and Sun, Wu and Szutu, Daphne and Takagi, Kentaro and Takagi, Masahiro and Teramoto, Munemasa and Tjoelker, Mark G. and Trumbore, Susan and Ueyama, Masahito and Vargas, Rodrigo and Varner, Ruth K. and Verfaillie, Joseph and Vogel, Christoph and Wang, Jinsong and Winston, Greg and Wood, Tana E. and Wu, Juying and Wutzler, Thomas and Zeng, Jiye and Zha, Tianshan and Zhang, Quan and Zou, Junliang},
abstractNote = {Globally, soils store two to three times as much carbon as currently resides in the atmosphere, and it is critical to understand how soil greenhouse gas (GHG) emissions and uptake will respond to ongoing climate change. In particular, the soil-to-atmosphere CO2 flux–commonly though imprecisely termed soil respiration, RS–is one of the largest carbon fluxes in the Earth system. An increasing number of high frequency RS measurements (typically, from an automated system with hourly sampling) have been made over the last two decades; more and more methane measurements are being made with such systems as well. Such high frequency data are an invaluable resource for probing the sensitivities of and controls on GHG fluxes, but presently lack a central database or repository. Here we describe the lightweight, open source COSORE (Continuous SOil REspiration) database, that focuses on automated, continuous and long-term GHG flux datasets, and is intended to serve as a community resource for earth sciences, climate change syntheses, and model evaluation. Contributed datasets are mapped to a single, consistent standard, with metadata on contributors, geographic location, measurement conditions, and ancillary data. The design emphasizes the importance of reproducibility, scientific transparency, and open access to data. While oriented towards continuously measured RS, the database design accommodates other soil-atmosphere measurements (e.g. ecosystem respiration, chamber-measured net ecosystem exchange, methane fluxes) as well as experimental treatments (heterotrophic only, etc.). We give brief examples of the types of analyses possible using this new community resource and describe its accompanying R software package.},
doi = {10.1111/gcb.15353},
journal = {Global Change Biology},
number = 12,
volume = 26,
place = {United Kingdom},
year = {Wed Oct 07 00:00:00 EDT 2020},
month = {Wed Oct 07 00:00:00 EDT 2020}
}

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