COSORE: A community database for continuous soil respiration and other soil‐atmosphere greenhouse gas flux data
Abstract
Globally, soils store two to three times as much carbon as currently resides in the atmosphere, and it is critical to understand how soil greenhouse gas (GHG) emissions and uptake will respond to ongoing climate change. In particular, the soil-to-atmosphere CO2 flux–commonly though imprecisely termed soil respiration, RS–is one of the largest carbon fluxes in the Earth system. An increasing number of high frequency RS measurements (typically, from an automated system with hourly sampling) have been made over the last two decades; more and more methane measurements are being made with such systems as well. Such high frequency data are an invaluable resource for probing the sensitivities of and controls on GHG fluxes, but presently lack a central database or repository. Here we describe the lightweight, open source COSORE (Continuous SOil REspiration) database, that focuses on automated, continuous and long-term GHG flux datasets, and is intended to serve as a community resource for earth sciences, climate change syntheses, and model evaluation. Contributed datasets are mapped to a single, consistent standard, with metadata on contributors, geographic location, measurement conditions, and ancillary data. The design emphasizes the importance of reproducibility, scientific transparency, and open access to data. While oriented towards continuously measuredmore »
- Authors:
-
more »
- Pacific Northwest National Laboratory Joint Global Change Research Institute at the University of Maryland–College Park College Park MD USA
- Lawrence Berkeley National Laboratory Berkeley CA USA
- Department of Earth System Science Stanford University Stanford CA USA
- Climate Change Science Institute and Environmental Sciences Division Oak Ridge National Laboratory Oak Ridge TN USA
- Department of Civil and Environmental Engineering University of California Irvine Irvine CA USA
- School of Geography and Earth Sciences McMaster University Hamilton Ontario Canada
- Departamento de Ecología Pontificia Universidad Católica de Chile Santiago Chile;Instituto de Ecología y Biodiversidad Santiago Chile
- Department of Building, Civil and Environmental Engineering Concordia University Montreal QC Canada
- Research Institute for Sustainable HumanosphereKyoto University Uji City Kyoto Japan
- Department of Environmental Science, Policy, and Management University of California Berkeley CA USA
- Faculty of Land and Food Systems University of British Columbia Vancouver BC Canada
- Department of Environmental Systems Science Institute of Agricultural Sciences ETH Zurich Zurich Switzerland
- Center for Ecosystem Science and Society Northern Arizona University Flagstaff AZ USA
- Department of Natural Resources and Environmental Studies Center for Interdisciplinary Research on Ecology and Sustainability National Dong Hwa University Hualien Taiwan
- Department of Geological Sciences and Bolin Centre for Climate Research Stockholm University Stockholm Sweden
- Department of Evolution, Ecology and Organismal Biology Ohio State University Columbus OH USA
- Appalachian Laboratory University of Maryland Center for Environmental Science Frostburg MD USA
- Department of Atmospheric and Oceanic Sciences University of Wisconsin‐Madison Madison WI USA
- Sustainable Resources ManagementSUNY‐ESF Syracuse NY USA
- Max Planck Institute for Biogeochemistry Jena Germany
- Eastern Forest Environmental Threat Assessment Center USDA Forest Service Research Triangle Park NC USA
- Plants and Ecosystems Department of Biology University of Antwerp Wilrijk Belgium
- Department of Biology Virginia Commonwealth University Richmond VA USA
- University of California at Irvine Irvine CA USA
- Sustainability Double Degree Program Oregon State University Corvallis OR USA
- Institute of Ecology College of Urban and Environmental Sciences Peking University Beijing China
- Research Faculty of Agriculture Hokkaido University Sapporo Japan
- Pacific Northwest National Laboratory Richland WA USA;Smithsonian Environmental Research Center Edgewater MD USA
- School of Forest Resources University of Maine Orono ME USA
- Department of Forest Ecology and Management Swedish University of Agricultural Sciences Umeå Sweden
- Beijing Research & Development Centre for Grass and Environment Beijing Academy of Agriculture and Forestry Sciences Beijing China
- The Pennsylvania State University University Park PA USA
- Forestry and Forest Products Research Institute Tsukuba‐city Japan
- Center for Global Environmental Research National Institute for Environmental Studies Tsukuba Japan
- Biology Department San Diego State University San Diego CA USA
- Hawkesbury Institute for the Environment Western Sydney University Penrith NSW Australia
- School of Environment, Earth and Ecosystem Sciences The Open University Milton Keynes UK
- Integrated Life Sciences Virginia Commonwealth University Richmond VA USA
- Biological Sciences University of Texas at El Paso El Paso TX USA
- School of Geographical Sciences Fujian Normal University Fuzhou P.R. China
- University at AlbanyState University of New York New York NY USA
- USDA Forest ServiceSouthern Research StationCoweeta Hydrologic Lab Otto NC USA
- Department of Ecology and Conservation Biology Texas A&M University College Station TX USA
- New York City College of Technology and the Graduate Center The City University of New York New York NY USA
- Department of Environmental Science, Policy, and Management University of California Berkeley CA USA;Department of Environmental Studies Macalester College St Paul MN USA
- UCD School of Biology and Environmental Science and UCD Earth InstituteUniversity College Dublin Dublin Ireland
- Department of Agronomy University of Almería Almería Spain
- Department of Environmental Science and Renewable Natural Resources University of Chile Santiago Chile;Institute of Ecology and Biodiversity Santiago Chile
- USDA Agricultural Research ServiceForage Seed and Cereal Research Unit Corvallis OR USA
- Department of Biology Indiana University Bloomington IN USA
- Department of Ecology, Evolution & Organismal Biology Iowa State University Ames IA USA
- Institute of Meteorology and Climate Research–Atmospheric Environmental Research KIT‐Campus AlpinKarlsruhe Institute of Technology Garmisch‐Partenkirchen Germany
- Department of Applied Physics University of Granada Granada Spain
- School of Natural Sciences Botany Department Trinity College Dublin Dublin Ireland
- Woods Hole Research Center Falmouth MA USA
- Southwest Watershed Research Center USDA‐ARS Tucson AZ USA
- Department of Atmospheric and Oceanic Sciences University of California Los Angeles Los Angeles CA USA
- Department of Global EcologyCarnegie Institution for Science Stanford CA USA
- Field Science Center for Northern Biosphere Hokkaido University Horonobe Japan
- Faculty of Agriculture University of Miyazaki Miyazaki Japan
- Graduate School of Life and Environmental Sciences Osaka Prefecture University Sakai Japan
- Department of Plant and Soil Sciences University of Delaware Newark DE USA
- Department of Earth Sciences and Institute for the Study of Earth, Oceans and Space University of New Hampshire Durham NH USA
- University of Michigan Biological Station Pellston MI USA
- Key Laboratory of Ecosystem Network Observation and Modeling Institute of Geographic Sciences and Natural Resources Research Chinese Academy of Sciences Beijing China
- Department of Science, Engineering and Mathematics Cypress College Cypress CA USA
- USDA Forest Service International Institute of Tropical Forestry Río Piedras Puerto Rico
- School of Soil and Water Conservation Beijing Forestry University Beijing P.R. China
- State Key Laboratory of Water Resources and Hydropower Engineering Science Wuhan University Wuhan P.R. China
- Publication Date:
- Research Org.:
- Univ. of Arizona, Tucson, AZ (United States); Terrestrial Ecosystems Research Associates, Corvallis, OR (United States); Pacific Northwest National Laboratory (PNNL), Richland, WA (United States); Oak Ridge National Laboratory (ORNL), Oak Ridge, TN (United States)
- Sponsoring Org.:
- USDOE Office of Science (SC), Biological and Environmental Research (BER); USDA; National Science Foundation (NSF)
- Contributing Org.:
- COSORE Team
- OSTI Identifier:
- 1670823
- Alternate Identifier(s):
- OSTI ID: 1685042; OSTI ID: 1770558; OSTI ID: 1782303; OSTI ID: 1830182
- Report Number(s):
- PNNL-SA-154095
Journal ID: ISSN 1354-1013
- Grant/Contract Number:
- SC0006741; AC02‐05CH11231; FOA‐0000749; FG02‐05ER64048; AC05-76RL01830; AC05-00OR22725; 2072-12620-001; DEB-1457805; DEB-0236502; DEB-0703561; DBI-1457897; DE‐AC02‐05CH11231; DE‐SC0006741; TES‐DE‐FOA‐0000749; DE‐FG02‐05ER64048
- Resource Type:
- Published Article
- Journal Name:
- Global Change Biology
- Additional Journal Information:
- Journal Name: Global Change Biology Journal Volume: 26 Journal Issue: 12; Journal ID: ISSN 1354-1013
- Publisher:
- Wiley
- Country of Publication:
- United Kingdom
- Language:
- English
- Subject:
- 59 BASIC BIOLOGICAL SCIENCES; carbon dioxide; greenhouse gases; methane; open data; open science; soil respiration
Citation Formats
Bond‐Lamberty, Ben, Christianson, Danielle S., Malhotra, Avni, Pennington, Stephanie C., Sihi, Debjani, AghaKouchak, Amir, Anjileli, Hassan, Altaf Arain, M., Armesto, Juan J., Ashraf, Samaneh, Ataka, Mioko, Baldocchi, Dennis, Andrew Black, Thomas, Buchmann, Nina, Carbone, Mariah S., Chang, Shih‐Chieh, Crill, Patrick, Curtis, Peter S., Davidson, Eric A., Desai, Ankur R., Drake, John E., El‐Madany, Tarek S., Gavazzi, Michael, Görres, Carolyn‐Monika, Gough, Christopher M., Goulden, Michael, Gregg, Jillian, Gutiérrez del Arroyo, Omar, He, Jin‐Sheng, Hirano, Takashi, Hopple, Anya, Hughes, Holly, Järveoja, Järvi, Jassal, Rachhpal, Jian, Jinshi, Kan, Haiming, Kaye, Jason, Kominami, Yuji, Liang, Naishen, Lipson, David, Macdonald, Catriona A., Maseyk, Kadmiel, Mathes, Kayla, Mauritz, Marguerite, Mayes, Melanie A., McNulty, Steve, Miao, Guofang, Migliavacca, Mirco, Miller, Scott, Miniat, Chelcy F., Nietz, Jennifer G., Nilsson, Mats B., Noormets, Asko, Norouzi, Hamidreza, O’Connell, Christine S., Osborne, Bruce, Oyonarte, Cecilio, Pang, Zhuo, Peichl, Matthias, Pendall, Elise, Perez‐Quezada, Jorge F., Phillips, Claire L., Phillips, Richard P., Raich, James W., Renchon, Alexandre A., Ruehr, Nadine K., Sánchez‐Cañete, Enrique P., Saunders, Matthew, Savage, Kathleen E., Schrumpf, Marion, Scott, Russell L., Seibt, Ulli, Silver, Whendee L., Sun, Wu, Szutu, Daphne, Takagi, Kentaro, Takagi, Masahiro, Teramoto, Munemasa, Tjoelker, Mark G., Trumbore, Susan, Ueyama, Masahito, Vargas, Rodrigo, Varner, Ruth K., Verfaillie, Joseph, Vogel, Christoph, Wang, Jinsong, Winston, Greg, Wood, Tana E., Wu, Juying, Wutzler, Thomas, Zeng, Jiye, Zha, Tianshan, Zhang, Quan, and Zou, Junliang. COSORE: A community database for continuous soil respiration and other soil‐atmosphere greenhouse gas flux data. United Kingdom: N. p., 2020.
Web. doi:10.1111/gcb.15353.
Bond‐Lamberty, Ben, Christianson, Danielle S., Malhotra, Avni, Pennington, Stephanie C., Sihi, Debjani, AghaKouchak, Amir, Anjileli, Hassan, Altaf Arain, M., Armesto, Juan J., Ashraf, Samaneh, Ataka, Mioko, Baldocchi, Dennis, Andrew Black, Thomas, Buchmann, Nina, Carbone, Mariah S., Chang, Shih‐Chieh, Crill, Patrick, Curtis, Peter S., Davidson, Eric A., Desai, Ankur R., Drake, John E., El‐Madany, Tarek S., Gavazzi, Michael, Görres, Carolyn‐Monika, Gough, Christopher M., Goulden, Michael, Gregg, Jillian, Gutiérrez del Arroyo, Omar, He, Jin‐Sheng, Hirano, Takashi, Hopple, Anya, Hughes, Holly, Järveoja, Järvi, Jassal, Rachhpal, Jian, Jinshi, Kan, Haiming, Kaye, Jason, Kominami, Yuji, Liang, Naishen, Lipson, David, Macdonald, Catriona A., Maseyk, Kadmiel, Mathes, Kayla, Mauritz, Marguerite, Mayes, Melanie A., McNulty, Steve, Miao, Guofang, Migliavacca, Mirco, Miller, Scott, Miniat, Chelcy F., Nietz, Jennifer G., Nilsson, Mats B., Noormets, Asko, Norouzi, Hamidreza, O’Connell, Christine S., Osborne, Bruce, Oyonarte, Cecilio, Pang, Zhuo, Peichl, Matthias, Pendall, Elise, Perez‐Quezada, Jorge F., Phillips, Claire L., Phillips, Richard P., Raich, James W., Renchon, Alexandre A., Ruehr, Nadine K., Sánchez‐Cañete, Enrique P., Saunders, Matthew, Savage, Kathleen E., Schrumpf, Marion, Scott, Russell L., Seibt, Ulli, Silver, Whendee L., Sun, Wu, Szutu, Daphne, Takagi, Kentaro, Takagi, Masahiro, Teramoto, Munemasa, Tjoelker, Mark G., Trumbore, Susan, Ueyama, Masahito, Vargas, Rodrigo, Varner, Ruth K., Verfaillie, Joseph, Vogel, Christoph, Wang, Jinsong, Winston, Greg, Wood, Tana E., Wu, Juying, Wutzler, Thomas, Zeng, Jiye, Zha, Tianshan, Zhang, Quan, & Zou, Junliang. COSORE: A community database for continuous soil respiration and other soil‐atmosphere greenhouse gas flux data. United Kingdom. https://doi.org/10.1111/gcb.15353
Bond‐Lamberty, Ben, Christianson, Danielle S., Malhotra, Avni, Pennington, Stephanie C., Sihi, Debjani, AghaKouchak, Amir, Anjileli, Hassan, Altaf Arain, M., Armesto, Juan J., Ashraf, Samaneh, Ataka, Mioko, Baldocchi, Dennis, Andrew Black, Thomas, Buchmann, Nina, Carbone, Mariah S., Chang, Shih‐Chieh, Crill, Patrick, Curtis, Peter S., Davidson, Eric A., Desai, Ankur R., Drake, John E., El‐Madany, Tarek S., Gavazzi, Michael, Görres, Carolyn‐Monika, Gough, Christopher M., Goulden, Michael, Gregg, Jillian, Gutiérrez del Arroyo, Omar, He, Jin‐Sheng, Hirano, Takashi, Hopple, Anya, Hughes, Holly, Järveoja, Järvi, Jassal, Rachhpal, Jian, Jinshi, Kan, Haiming, Kaye, Jason, Kominami, Yuji, Liang, Naishen, Lipson, David, Macdonald, Catriona A., Maseyk, Kadmiel, Mathes, Kayla, Mauritz, Marguerite, Mayes, Melanie A., McNulty, Steve, Miao, Guofang, Migliavacca, Mirco, Miller, Scott, Miniat, Chelcy F., Nietz, Jennifer G., Nilsson, Mats B., Noormets, Asko, Norouzi, Hamidreza, O’Connell, Christine S., Osborne, Bruce, Oyonarte, Cecilio, Pang, Zhuo, Peichl, Matthias, Pendall, Elise, Perez‐Quezada, Jorge F., Phillips, Claire L., Phillips, Richard P., Raich, James W., Renchon, Alexandre A., Ruehr, Nadine K., Sánchez‐Cañete, Enrique P., Saunders, Matthew, Savage, Kathleen E., Schrumpf, Marion, Scott, Russell L., Seibt, Ulli, Silver, Whendee L., Sun, Wu, Szutu, Daphne, Takagi, Kentaro, Takagi, Masahiro, Teramoto, Munemasa, Tjoelker, Mark G., Trumbore, Susan, Ueyama, Masahito, Vargas, Rodrigo, Varner, Ruth K., Verfaillie, Joseph, Vogel, Christoph, Wang, Jinsong, Winston, Greg, Wood, Tana E., Wu, Juying, Wutzler, Thomas, Zeng, Jiye, Zha, Tianshan, Zhang, Quan, and Zou, Junliang. Wed .
"COSORE: A community database for continuous soil respiration and other soil‐atmosphere greenhouse gas flux data". United Kingdom. https://doi.org/10.1111/gcb.15353.
@article{osti_1670823,
title = {COSORE: A community database for continuous soil respiration and other soil‐atmosphere greenhouse gas flux data},
author = {Bond‐Lamberty, Ben and Christianson, Danielle S. and Malhotra, Avni and Pennington, Stephanie C. and Sihi, Debjani and AghaKouchak, Amir and Anjileli, Hassan and Altaf Arain, M. and Armesto, Juan J. and Ashraf, Samaneh and Ataka, Mioko and Baldocchi, Dennis and Andrew Black, Thomas and Buchmann, Nina and Carbone, Mariah S. and Chang, Shih‐Chieh and Crill, Patrick and Curtis, Peter S. and Davidson, Eric A. and Desai, Ankur R. and Drake, John E. and El‐Madany, Tarek S. and Gavazzi, Michael and Görres, Carolyn‐Monika and Gough, Christopher M. and Goulden, Michael and Gregg, Jillian and Gutiérrez del Arroyo, Omar and He, Jin‐Sheng and Hirano, Takashi and Hopple, Anya and Hughes, Holly and Järveoja, Järvi and Jassal, Rachhpal and Jian, Jinshi and Kan, Haiming and Kaye, Jason and Kominami, Yuji and Liang, Naishen and Lipson, David and Macdonald, Catriona A. and Maseyk, Kadmiel and Mathes, Kayla and Mauritz, Marguerite and Mayes, Melanie A. and McNulty, Steve and Miao, Guofang and Migliavacca, Mirco and Miller, Scott and Miniat, Chelcy F. and Nietz, Jennifer G. and Nilsson, Mats B. and Noormets, Asko and Norouzi, Hamidreza and O’Connell, Christine S. and Osborne, Bruce and Oyonarte, Cecilio and Pang, Zhuo and Peichl, Matthias and Pendall, Elise and Perez‐Quezada, Jorge F. and Phillips, Claire L. and Phillips, Richard P. and Raich, James W. and Renchon, Alexandre A. and Ruehr, Nadine K. and Sánchez‐Cañete, Enrique P. and Saunders, Matthew and Savage, Kathleen E. and Schrumpf, Marion and Scott, Russell L. and Seibt, Ulli and Silver, Whendee L. and Sun, Wu and Szutu, Daphne and Takagi, Kentaro and Takagi, Masahiro and Teramoto, Munemasa and Tjoelker, Mark G. and Trumbore, Susan and Ueyama, Masahito and Vargas, Rodrigo and Varner, Ruth K. and Verfaillie, Joseph and Vogel, Christoph and Wang, Jinsong and Winston, Greg and Wood, Tana E. and Wu, Juying and Wutzler, Thomas and Zeng, Jiye and Zha, Tianshan and Zhang, Quan and Zou, Junliang},
abstractNote = {Globally, soils store two to three times as much carbon as currently resides in the atmosphere, and it is critical to understand how soil greenhouse gas (GHG) emissions and uptake will respond to ongoing climate change. In particular, the soil-to-atmosphere CO2 flux–commonly though imprecisely termed soil respiration, RS–is one of the largest carbon fluxes in the Earth system. An increasing number of high frequency RS measurements (typically, from an automated system with hourly sampling) have been made over the last two decades; more and more methane measurements are being made with such systems as well. Such high frequency data are an invaluable resource for probing the sensitivities of and controls on GHG fluxes, but presently lack a central database or repository. Here we describe the lightweight, open source COSORE (Continuous SOil REspiration) database, that focuses on automated, continuous and long-term GHG flux datasets, and is intended to serve as a community resource for earth sciences, climate change syntheses, and model evaluation. Contributed datasets are mapped to a single, consistent standard, with metadata on contributors, geographic location, measurement conditions, and ancillary data. The design emphasizes the importance of reproducibility, scientific transparency, and open access to data. While oriented towards continuously measured RS, the database design accommodates other soil-atmosphere measurements (e.g. ecosystem respiration, chamber-measured net ecosystem exchange, methane fluxes) as well as experimental treatments (heterotrophic only, etc.). We give brief examples of the types of analyses possible using this new community resource and describe its accompanying R software package.},
doi = {10.1111/gcb.15353},
journal = {Global Change Biology},
number = 12,
volume = 26,
place = {United Kingdom},
year = {Wed Oct 07 00:00:00 EDT 2020},
month = {Wed Oct 07 00:00:00 EDT 2020}
}
https://doi.org/10.1111/gcb.15353
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