Draft Genome Sequences of Three Monokaryotic Isolates of the White-Rot Basidiomycete Fungus Dichomitus squalens
Abstract
Here, we report the draft genome sequences of three isolates of the wood-decaying white-rot basidiomycete fungus Dichomitus squalens. The genomes of these monokaryons were sequenced to provide more information on the intraspecies genomic diversity of this fungus and were compared to the previously sequenced genome ofD. squalens LYAD-421 SS1.
- Authors:
-
[4];
[4];
[5]
- Univ. of Utrecht (Netherlands)
- Westerdijk Fungal Biodiversity Centre, Utrecht (The Netherlands); Univ. of Utrecht (Netherlands)
- USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States)
- Univ. of Helsinki (Finland)
- Westerdijk Fungal Biodiversity Centre, Utrecht (The Netherlands); Univ. of Utrecht (Netherlands) ; Univ. of Helsinki (Finland)
- Publication Date:
- Research Org.:
- Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)
- Sponsoring Org.:
- USDOE Office of Science (SC)
- OSTI Identifier:
- 1594918
- Grant/Contract Number:
- AC02-05CH11231
- Resource Type:
- Accepted Manuscript
- Journal Name:
- Microbiology Resource Announcements
- Additional Journal Information:
- Journal Volume: 8; Journal Issue: 18; Journal ID: ISSN 2576-098X
- Publisher:
- SSPA - American Society for Microbiology
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 59 BASIC BIOLOGICAL SCIENCES
Citation Formats
Casado López, Sara, Peng, Mao, Daly, Paul, Andreopoulos, Bill, Pangilinan, Jasmyn, Lipzen, Anna, Riley, Robert, Ahrendt, Steven, Ng, Vivian, Barry, Kerrie, Daum, Chris, Grigoriev, Igor V., Hildén, Kristiina S., Mäkelä, Miia R., and de Vries, Ronald P. Draft Genome Sequences of Three Monokaryotic Isolates of the White-Rot Basidiomycete Fungus Dichomitus squalens. United States: N. p., 2019.
Web. doi:10.1128/MRA.00264-19.
Casado López, Sara, Peng, Mao, Daly, Paul, Andreopoulos, Bill, Pangilinan, Jasmyn, Lipzen, Anna, Riley, Robert, Ahrendt, Steven, Ng, Vivian, Barry, Kerrie, Daum, Chris, Grigoriev, Igor V., Hildén, Kristiina S., Mäkelä, Miia R., & de Vries, Ronald P. Draft Genome Sequences of Three Monokaryotic Isolates of the White-Rot Basidiomycete Fungus Dichomitus squalens. United States. https://doi.org/10.1128/MRA.00264-19
Casado López, Sara, Peng, Mao, Daly, Paul, Andreopoulos, Bill, Pangilinan, Jasmyn, Lipzen, Anna, Riley, Robert, Ahrendt, Steven, Ng, Vivian, Barry, Kerrie, Daum, Chris, Grigoriev, Igor V., Hildén, Kristiina S., Mäkelä, Miia R., and de Vries, Ronald P. Thu .
"Draft Genome Sequences of Three Monokaryotic Isolates of the White-Rot Basidiomycete Fungus Dichomitus squalens". United States. https://doi.org/10.1128/MRA.00264-19. https://www.osti.gov/servlets/purl/1594918.
@article{osti_1594918,
title = {Draft Genome Sequences of Three Monokaryotic Isolates of the White-Rot Basidiomycete Fungus Dichomitus squalens},
author = {Casado López, Sara and Peng, Mao and Daly, Paul and Andreopoulos, Bill and Pangilinan, Jasmyn and Lipzen, Anna and Riley, Robert and Ahrendt, Steven and Ng, Vivian and Barry, Kerrie and Daum, Chris and Grigoriev, Igor V. and Hildén, Kristiina S. and Mäkelä, Miia R. and de Vries, Ronald P.},
abstractNote = {Here, we report the draft genome sequences of three isolates of the wood-decaying white-rot basidiomycete fungus Dichomitus squalens. The genomes of these monokaryons were sequenced to provide more information on the intraspecies genomic diversity of this fungus and were compared to the previously sequenced genome ofD. squalens LYAD-421 SS1.},
doi = {10.1128/MRA.00264-19},
journal = {Microbiology Resource Announcements},
number = 18,
volume = 8,
place = {United States},
year = {Thu May 02 00:00:00 EDT 2019},
month = {Thu May 02 00:00:00 EDT 2019}
}
Free Publicly Available Full Text
Publisher's Version of Record
Other availability
Search WorldCat to find libraries that may hold this journal
Save to My Library
You must Sign In or Create an Account in order to save documents to your library.
Works referenced in this record:
Lignin Distribution in Cell Walls of Birch Wood Decayed by White Rot Basidiomycetes
journal, January 1987
- Blanchette, R. A.
- Phytopathology, Vol. 77, Issue 5
Basidiomycetes at the timberline in Lapland 2. An annotated checklist of the polypores of northeastern Finland
journal, January 1991
- Renvall, Pertti; Renvall, Tarja; Niemelä, Tuomo
- Karstenia, Vol. 31, Issue 1
The Paleozoic Origin of Enzymatic Lignin Decomposition Reconstructed from 31 Fungal Genomes
journal, June 2012
- Floudas, Dimitrios; Binder, Manfred; Riley, Robert
- Science, Vol. 336, Issue 6089
Saccharification of Lignocelluloses by Carbohydrate Active Enzymes of the White Rot Fungus Dichomitus squalens
journal, December 2015
- Rytioja, Johanna; Hildén, Kristiina; Mäkinen, Susanna
- PLOS ONE, Vol. 10, Issue 12
Draft Genome Assemblies of Five Robust Yarrowia lipolytica Strains Exhibiting High Lipid Production, Pentose Sugar Utilization, and Sugar Alcohol Secretion from Undetoxified Lignocellulosic Biomass Hydrolysates
journal, September 2018
- Walker, Caleb; Ryu, Seunghyun; Na, Hyunsoo
- Microbiology Resource Announcements, Vol. 7, Issue 12
Functional diversity in Dichomitus squalens monokaryons
journal, March 2017
- L’opez, Sara Casado; Theelen, Bart; Manserra, Serena
- IMA Fungus, Vol. 8, Issue 1
An improved and reproducible protocol for the extraction of high quality fungal RNA from plant biomass substrates
journal, November 2014
- Patyshakuliyeva, Aleksandrina; Mäkelä, Miia R.; Sietiö, Outi-Maaria
- Fungal Genetics and Biology, Vol. 72
Rnnotator: an automated de novo transcriptome assembly pipeline from stranded RNA-Seq reads
journal, January 2010
- Martin, Jeffrey; Bruno, Vincent M.; Fang, Zhide
- BMC Genomics, Vol. 11, Issue 1
Induction of Genes Encoding Plant Cell Wall-Degrading Carbohydrate-Active Enzymes by Lignocellulose-Derived Monosaccharides and Cellobiose in the White-Rot Fungus Dichomitus squalens
journal, March 2018
- Casado López, Sara; Peng, Mao; Issak, Tedros Yonatan
- Applied and Environmental Microbiology, Vol. 84, Issue 11
Transcriptional analysis of selected cellulose-acting enzymes encoding genes of the white-rot fungus Dichomitus squalens on spruce wood and microcrystalline cellulose
journal, November 2014
- Rytioja, Johanna; Hildén, Kristiina; Hatakka, Annele
- Fungal Genetics and Biology, Vol. 72
MycoCosm portal: gearing up for 1000 fungal genomes
journal, December 2013
- Grigoriev, Igor V.; Nikitin, Roman; Haridas, Sajeet
- Nucleic Acids Research, Vol. 42, Issue D1
The two manganese peroxidases Pr-MnP2 and Pr-MnP3 of Phlebia radiata, a lignin-degrading basidiomycete, are phylogenetically and structurally divergent
journal, May 2005
- Hildén, Kristiina; Martinez, Angel T.; Hatakka, Annele
- Fungal Genetics and Biology, Vol. 42, Issue 5
Oxalate-Metabolising Genes of the White-Rot Fungus Dichomitus squalens Are Differentially Induced on Wood and at High Proton Concentration
journal, February 2014
- Mäkelä, Miia R.; Sietiö, Outi-Maaria; de Vries, Ronald P.
- PLoS ONE, Vol. 9, Issue 2
Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
journal, February 2008
- Zerbino, D. R.; Birney, E.
- Genome Research, Vol. 18, Issue 5
The molecular response of the white-rot fungus D ichomitus squalens to wood and non-woody biomass as examined by transcriptome and exoproteome analyses : Molecular response of
journal, January 2017
- Rytioja, Johanna; Hildén, Kristiina; Di Falco, Marcos
- Environmental Microbiology, Vol. 19, Issue 3
High-quality draft assemblies of mammalian genomes from massively parallel sequence data
journal, December 2010
- Gnerre, S.; MacCallum, I.; Przybylski, D.
- Proceedings of the National Academy of Sciences, Vol. 108, Issue 4
Dichomitus squalens partially tailors its molecular responses to the composition of solid wood : Responses of
journal, October 2018
- Daly, Paul; López, Sara Casado; Peng, Mao
- Environmental Microbiology, Vol. 20, Issue 11
Fungal Genome Annotation
book, January 2018
- Haridas, Sajeet; Salamov, Asaf; Grigoriev, Igor V.
- Methods in Molecular Biology
Comparative mitochondrial genome analysis reveals intron dynamics and gene rearrangements in two Trametes species
journal, January 2021
- Chen, Cheng; Li, Qiang; Fu, Rongtao
- Scientific Reports, Vol. 11, Issue 1
Genome-scale model reconstruction of the methylotrophic yeast Ogataea polymorpha
text, January 2021
- Liebal, Ulf Winfried; Fabry, Brigida A.; Ravikrishnan, Aarthi
- RWTH Aachen University