Draft Genome Sequence of the Basidiomycete White-Rot Fungus Phlebia centrifuga

Mäkelä, Miia R.; Peng, Mao; Granchi, Zoraide; Chin-A-Woeng, Thomas; Hegi, Rosa; van Pelt, Sake I.; Ahrendt, Steven; Riley, Robert; Hainaut, Matthieu; Henrissat, Bernard; Grigoriev, Igor V.; de Vries, Ronald P.; Hildén, Kristiina S.

doi:10.1128/genomea.01414-17

Title: Draft Genome Sequence of the Basidiomycete White-Rot Fungus Phlebia centrifuga

Journal Article · 05 April 2018 · Genome Announcements

DOI: https://doi.org/10.1128/genomea.01414-17 · OSTI ID:1619096

^[1]; Peng, Mao ^[2]; Granchi, Zoraide ^[3]; Chin-A-Woeng, Thomas ^[3]; Hegi, Rosa ^[3]; van Pelt, Sake I. ^[3]; Ahrendt, Steven ^[4]; Riley, Robert ^[5]; Hainaut, Matthieu ^[6]; Henrissat, Bernard ^[7]; Grigoriev, Igor V. ^[4]; de Vries, Ronald P. ^[2];

^[1]

Univ. of Helsinki (Finland)
Utrecht University, Utrecht (Netherlands)
GenomeScan B.V., Leiden (Netherlands)
USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States); Univ. of California, Berkeley, CA (United States)
USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States)
Aix-Marseille Univ., Marseille (France); INRA, Marseille (France)
Aix-Marseille Univ., Marseille (France); INRA, Marseille (France); King Abdulaziz Univ., Jeddah (Saudi Arabia)

Here, we report the genome sequence of wood-decaying white-rot fungus Phlebia centrifuga strain FBCC195, isolated from Norway spruce (Picea abies) in Finnish Lapland. The 34.66-Mb genome containing 13,785 gene models is similar to the genome length reported for other saprobic white-rot species.

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Research Organization:: Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)

Sponsoring Organization:: USDOE Office of Science (SC); European Union (EU); Academy of Finland; National Science Foundation (NSF)

Grant/Contract Number:: AC02-05CH11231

OSTI ID:: 1619096

Journal Information:: Genome Announcements, Journal Name: Genome Announcements Journal Issue: 14 Vol. 6; ISSN 2169-8287

Publisher:: American Society for MicrobiologyCopyright Statement

Country of Publication:: United States

Language:: English

References (18)

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An improved and reproducible protocol for the extraction of high quality fungal RNA from plant biomass substrates Patyshakuliyeva, Aleksandrina; Mäkelä, Miia R.; Sietiö, Outi-Maaria Fungal Genetics and Biology, Vol. 72 https://doi.org/10.1016/j.fgb.2014.06.001	journal	November 2014
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QUAST: quality assessment tool for genome assemblies Gurevich, Alexey; Saveliev, Vladislav; Vyahhi, Nikolay Bioinformatics, Vol. 29, Issue 8 https://doi.org/10.1093/bioinformatics/btt086	journal	February 2013
MycoCosm portal: gearing up for 1000 fungal genomes Grigoriev, Igor V.; Nikitin, Roman; Haridas, Sajeet Nucleic Acids Research, Vol. 42, Issue D1 https://doi.org/10.1093/nar/gkt1183	journal	December 2013
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Production of organic acids and oxalate decarboxylase in lignin-degrading white rot fungi Mäkelä, Miia; Galkin, Sari; Hatakka, Annele Enzyme and Microbial Technology, Vol. 30, Issue 4 https://doi.org/10.1016/S0141-0229(02)00012-1	journal	April 2002
The two manganese peroxidases Pr-MnP2 and Pr-MnP3 of Phlebia radiata, a lignin-degrading basidiomycete, are phylogenetically and structurally divergent Hildén, Kristiina; Martinez, Angel T.; Hatakka, Annele Fungal Genetics and Biology, Vol. 42, Issue 5 https://doi.org/10.1016/j.fgb.2005.01.008	journal	May 2005
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QUAST: quality assessment tool for genome assemblies Gurevich, Alexey; Saveliev, Vladislav; Vyahhi, Nikolay Bioinformatics, Vol. 29, Issue 8 https://doi.org/10.1093/bioinformatics/btt086	journal	February 2013
MycoCosm portal: gearing up for 1000 fungal genomes Grigoriev, Igor V.; Nikitin, Roman; Haridas, Sajeet Nucleic Acids Research, Vol. 42, Issue D1 https://doi.org/10.1093/nar/gkt1183	journal	December 2013
ABySS: A parallel assembler for short read sequence data Simpson, J. T.; Wong, K.; Jackman, S. D. Genome Research, Vol. 19, Issue 6 https://doi.org/10.1101/gr.089532.108	journal	February 2009
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Cited By (1)

Genome description of Phlebia radiata 79 with comparative genomics analysis on lignocellulose decomposition machinery of phlebioid fungi Mäkinen, Mari; Kuuskeri, Jaana; Laine, Pia BMC Genomics, Vol. 20, Issue 1 https://doi.org/10.1186/s12864-019-5817-8	journal	May 2019

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