Permanent Improved High-Quality Draft Genome Sequence of Nocardia casuarinae Strain BMG51109, an Endophyte of Actinorhizal Root Nodules of Casuarina glauca
Abstract
Here, we report the first genome sequence of a Nocardia plant endophyte, N. casuarinae strain BMG51109, isolated from Casuarina glauca root nodules. The improved high-quality draft genome sequence contains 8,787,999 bp with a 68.90% GC content and 7,307 predicted protein-coding genes.
- Authors:
-
- University of Tunis-El Manar, Tunis, Tunisia
- University of New Hampshire, Durham, New Hampshire, USA
- DOE Joint Genome Institute, Walnut Creek, California, USA
- University of North Bengal, Siliguri, India
- University of Quilmes, Quilmes, Argentina
- Publication Date:
- Research Org.:
- Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)
- Sponsoring Org.:
- USDOE Office of Science (SC), Biological and Environmental Research (BER)
- OSTI Identifier:
- 1786491
- Alternate Identifier(s):
- OSTI ID: 1378988
- Grant/Contract Number:
- AC02-05CH11231
- Resource Type:
- Published Article
- Journal Name:
- Genome Announcements
- Additional Journal Information:
- Journal Name: Genome Announcements Journal Volume: 4 Journal Issue: 4; Journal ID: ISSN 2169-8287
- Publisher:
- American Society for Microbiology
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 59 BASIC BIOLOGICAL SCIENCES
Citation Formats
Ghodhbane-Gtari, Faten, Beauchemin, Nicholas, Louati, Moussa, Nouioui, Imen, Ktari, Amir, Hezbri, Karima, Gueddou, Abdellatif, Chen, Amy, Huntemann, Marcel, Ivanova, Natalia, Kyrpides, Nikos, Markowitz, Victor, Mavrommatis, Kostas, Pagani, Ioanna, Sen, Arnab, Wall, Luis, Woyke, Tanja, Gtari, Maher, and Tisa, Louis S. Permanent Improved High-Quality Draft Genome Sequence of Nocardia casuarinae Strain BMG51109, an Endophyte of Actinorhizal Root Nodules of Casuarina glauca. United States: N. p., 2016.
Web. doi:10.1128/genomeA.00799-16.
Ghodhbane-Gtari, Faten, Beauchemin, Nicholas, Louati, Moussa, Nouioui, Imen, Ktari, Amir, Hezbri, Karima, Gueddou, Abdellatif, Chen, Amy, Huntemann, Marcel, Ivanova, Natalia, Kyrpides, Nikos, Markowitz, Victor, Mavrommatis, Kostas, Pagani, Ioanna, Sen, Arnab, Wall, Luis, Woyke, Tanja, Gtari, Maher, & Tisa, Louis S. Permanent Improved High-Quality Draft Genome Sequence of Nocardia casuarinae Strain BMG51109, an Endophyte of Actinorhizal Root Nodules of Casuarina glauca. United States. https://doi.org/10.1128/genomeA.00799-16
Ghodhbane-Gtari, Faten, Beauchemin, Nicholas, Louati, Moussa, Nouioui, Imen, Ktari, Amir, Hezbri, Karima, Gueddou, Abdellatif, Chen, Amy, Huntemann, Marcel, Ivanova, Natalia, Kyrpides, Nikos, Markowitz, Victor, Mavrommatis, Kostas, Pagani, Ioanna, Sen, Arnab, Wall, Luis, Woyke, Tanja, Gtari, Maher, and Tisa, Louis S. Thu .
"Permanent Improved High-Quality Draft Genome Sequence of Nocardia casuarinae Strain BMG51109, an Endophyte of Actinorhizal Root Nodules of Casuarina glauca". United States. https://doi.org/10.1128/genomeA.00799-16.
@article{osti_1786491,
title = {Permanent Improved High-Quality Draft Genome Sequence of Nocardia casuarinae Strain BMG51109, an Endophyte of Actinorhizal Root Nodules of Casuarina glauca},
author = {Ghodhbane-Gtari, Faten and Beauchemin, Nicholas and Louati, Moussa and Nouioui, Imen and Ktari, Amir and Hezbri, Karima and Gueddou, Abdellatif and Chen, Amy and Huntemann, Marcel and Ivanova, Natalia and Kyrpides, Nikos and Markowitz, Victor and Mavrommatis, Kostas and Pagani, Ioanna and Sen, Arnab and Wall, Luis and Woyke, Tanja and Gtari, Maher and Tisa, Louis S.},
abstractNote = {Here, we report the first genome sequence of a Nocardia plant endophyte, N. casuarinae strain BMG51109, isolated from Casuarina glauca root nodules. The improved high-quality draft genome sequence contains 8,787,999 bp with a 68.90% GC content and 7,307 predicted protein-coding genes.},
doi = {10.1128/genomeA.00799-16},
journal = {Genome Announcements},
number = 4,
volume = 4,
place = {United States},
year = {Thu Aug 25 00:00:00 EDT 2016},
month = {Thu Aug 25 00:00:00 EDT 2016}
}
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https://doi.org/10.1128/genomeA.00799-16
https://doi.org/10.1128/genomeA.00799-16
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Works referenced in this record:
Ecology and Physiology of Non-Frankia Actinobacteria from Actinorhizal Plants
book, January 2014
- Ghodhbane-Gtari, Faten; Tisa, Louis S.
- Plasticity in Plant-Growth-Promoting and Phytopathogenic Bacteria
Isolation and characterization of non-Frankia actinobacteria from root nodules of Alnus glutinosa, Casuarina glauca and Elaeagnus angustifolia
journal, December 2009
- Ghodhbane-Gtari, Faten; Essoussi, Imene; Chattaoui, Mayssa
- Symbiosis, Vol. 50, Issue 1-2
The DOE-JGI Standard Operating Procedure for the Annotations of Microbial Genomes
journal, July 2009
- Mavromatis, Konstantinos; Ivanova, Natalia N.; Chen, I-Min A.
- Standards in Genomic Sciences, Vol. 1, Issue 1
Nocardia casuarinae sp. nov., an actinobacterial endophyte isolated from root nodules of Casuarina glauca
journal, April 2014
- Ghodhbane-Gtari, Faten; Nouioui, Imen; Salem, Karima
- Antonie van Leeuwenhoek, Vol. 105, Issue 6
Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data
journal, May 2013
- Chin, Chen-Shan; Alexander, David H.; Marks, Patrick
- Nature Methods, Vol. 10, Issue 6
Nocardia callitridis sp. nov., an endophytic actinobacterium isolated from a surface-sterilized root of an Australian native pine tree
journal, August 2009
- Kaewkla, O.; Franco, C. M. M.
- INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 60, Issue 7
IMG ER: a system for microbial genome annotation expert review and curation
journal, June 2009
- Markowitz, Victor M.; Mavromatis, Konstantinos; Ivanova, Natalia N.
- Bioinformatics, Vol. 25, Issue 17
Prodigal: prokaryotic gene recognition and translation initiation site identification
journal, March 2010
- Hyatt, Doug; Chen, Gwo-Liang; LoCascio, Philip F.
- BMC Bioinformatics, Vol. 11, Issue 1
GenePRIMP: a gene prediction improvement pipeline for prokaryotic genomes
journal, May 2010
- Pati, Amrita; Ivanova, Natalia N.; Mikhailova, Natalia
- Nature Methods, Vol. 7, Issue 6
The Genomes OnLine Database (GOLD) v.5: a metadata management system based on a four level (meta)genome project classification
journal, October 2014
- Reddy, T. B. K.; Thomas, Alex D.; Stamatis, Dimitri
- Nucleic Acids Research, Vol. 43, Issue D1
Nocardia artemisiae sp. nov., an endophytic actinobacterium isolated from a surface-sterilized stem of Artemisia annua L.
journal, January 2011
- Zhao, G. -Z.; Li, J.; Zhu, W. -Y.
- INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 61, Issue 12
Nocardia endophytica sp. nov., an endophytic actinomycete isolated from the oil-seed plant Jatropha curcas L.
journal, September 2010
- Xing, K.; Qin, S.; Fei, S. -M.
- INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 61, Issue 8