skip to main content

DOE PAGESDOE PAGES

Title: High-quality permanent draft genome sequence of the Parapiptadenia rigida-nodulating Cupriavidus sp. strain UYPR2.512

Cupriavidus sp. strain UYPR2.512 is an aerobic, motile, Gram-negative, non-spore-forming rod that was isolated from a root nodule of Parapiptadenia rigida grown in soils from a native forest of Uruguay. Here we describe the features of Cupriavidus sp. strain UYPR2.512, together with sequence and annotation. We find the 7,858,949 bp high-quality permanent draft genome is arranged in 365 scaffolds of 369 contigs, contains 7,411 protein-coding genes and 76 RNA-only encoding genes, and is part of the GEBA-RNB project proposal.
Authors:
 [1] ;  [2] ;  [1] ;  [3] ;  [4] ;  [4] ;  [5] ;  [4] ;  [4] ;  [4] ;  [1] ;  [6] ;  [1]
  1. Murdoch Univ., Murdoch (Western Australia)
  2. Instituto de Investigaciones Biologicas Clemente Estable, Montevideo (Uruguay)
  3. Soybean Genomics and Improvement Lab., Beltsville, MD (United States)
  4. DOE Joint Genome Institute, Walnut Creek, CA (United States)
  5. Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
  6. DOE Joint Genome Institute, Walnut Creek, CA (United States); King Abdulaziz Univ., Jeddah (Saudi Arabia)
Publication Date:
Grant/Contract Number:
AC02-05CH11231; AC52-07NA27344; AC02-06NA25396
Type:
Accepted Manuscript
Journal Name:
Standards in Genomic Sciences
Additional Journal Information:
Journal Volume: 10; Journal Issue: 1; Journal ID: ISSN 1944-3277
Publisher:
BioMed Central
Research Org:
Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
Sponsoring Org:
USDOE Office of Science (SC), Biological and Environmental Research (BER) (SC-23)
Country of Publication:
United States
Language:
English
Subject:
59 BASIC BIOLOGICAL SCIENCES; root-nodule bacteria; nitrogen fixation; Rhizobia; betaproteobacteria; GEBA-RNB
OSTI Identifier:
1256478

De Meyer, Sofie E., Fabiano, Elena, Tian, Rui, Van Berkum, Peter, Seshadri, Rekha, Reddy, T. B. K., Markowitz, Victor, Ivanova, Natalia N., Pati, Amrita, Woyke, Tanja, Howieson, John, Kyrpides, Nikos C., and Reeve, Wayne. High-quality permanent draft genome sequence of the Parapiptadenia rigida-nodulating Cupriavidus sp. strain UYPR2.512. United States: N. p., Web. doi:10.1186/1944-3277-10-13.
De Meyer, Sofie E., Fabiano, Elena, Tian, Rui, Van Berkum, Peter, Seshadri, Rekha, Reddy, T. B. K., Markowitz, Victor, Ivanova, Natalia N., Pati, Amrita, Woyke, Tanja, Howieson, John, Kyrpides, Nikos C., & Reeve, Wayne. High-quality permanent draft genome sequence of the Parapiptadenia rigida-nodulating Cupriavidus sp. strain UYPR2.512. United States. doi:10.1186/1944-3277-10-13.
De Meyer, Sofie E., Fabiano, Elena, Tian, Rui, Van Berkum, Peter, Seshadri, Rekha, Reddy, T. B. K., Markowitz, Victor, Ivanova, Natalia N., Pati, Amrita, Woyke, Tanja, Howieson, John, Kyrpides, Nikos C., and Reeve, Wayne. 2015. "High-quality permanent draft genome sequence of the Parapiptadenia rigida-nodulating Cupriavidus sp. strain UYPR2.512". United States. doi:10.1186/1944-3277-10-13. https://www.osti.gov/servlets/purl/1256478.
@article{osti_1256478,
title = {High-quality permanent draft genome sequence of the Parapiptadenia rigida-nodulating Cupriavidus sp. strain UYPR2.512},
author = {De Meyer, Sofie E. and Fabiano, Elena and Tian, Rui and Van Berkum, Peter and Seshadri, Rekha and Reddy, T. B. K. and Markowitz, Victor and Ivanova, Natalia N. and Pati, Amrita and Woyke, Tanja and Howieson, John and Kyrpides, Nikos C. and Reeve, Wayne},
abstractNote = {Cupriavidus sp. strain UYPR2.512 is an aerobic, motile, Gram-negative, non-spore-forming rod that was isolated from a root nodule of Parapiptadenia rigida grown in soils from a native forest of Uruguay. Here we describe the features of Cupriavidus sp. strain UYPR2.512, together with sequence and annotation. We find the 7,858,949 bp high-quality permanent draft genome is arranged in 365 scaffolds of 369 contigs, contains 7,411 protein-coding genes and 76 RNA-only encoding genes, and is part of the GEBA-RNB project proposal.},
doi = {10.1186/1944-3277-10-13},
journal = {Standards in Genomic Sciences},
number = 1,
volume = 10,
place = {United States},
year = {2015},
month = {4}
}