WHONDRS River Corridor Sediment and Water Geochemistry and In Situ Sensor Data from 7 Perennial and 7 Intermittent Streams across San Antonio, Texas (v3)

Danczak, Robert E.; Bowden, Mark E.; Crawford, Mekayla; Delgado, Dillman; Garayburu-Caruso, Vanessa A.; Goldman, Amy E.; Forbes, Brieanne; Laan, Maggi; Laub, Brian; McKever, Sophia A.; Ocejo, Juan Alberto; Renteria, Lupita; Tfaily, Malak M.; Vergara, Mariana; Veach, Allison; Stegen, James C.

doi:10.15485/2529428

Title: WHONDRS River Corridor Sediment and Water Geochemistry and In Situ Sensor Data from 7 Perennial and 7 Intermittent Streams across San Antonio, Texas (v3)

Dataset
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Abstract

This dataset supports a broader study examining the effects of intermittency on sediment respiration. The dataset provides sediment and surface water geochemistry and in situ sensor data from 7 perennial and 7 intermittent streams in San Antonio, Texas. Each stream/site was visited both in summer during base flow (July-September 2023) and winter during peak flow (January-February 2024). Related data were collected and will be published separately in collaboration with A. Veach. The data package was originally published in April 2025. It was updated in June 2025 (v2; modified and new files) and September 2025 (v3; modified files). See the change history section in the readme for more details. For details on how to navigate data packages generated by this project, see https://data.ess-dive.lbl.gov/portals/PNNLRiverCorridorSFA/About. This dataset is comprised of two folders of field photos and videos, one folder of raw Fourier transform ion cyclotron resonance mass spectrometry (FTICR-MS) data and one main data folder containing (1) file-level metadata; (2) data dictionary; (3) field metadata; (4) readme; (5) international generic sample number (IGSN) mapping file; (6) field protocol; (7) a subfolder with sample data; and (8) a subfolder with sensor data. The sample data subfolder contains (1) surface water and sediment dissolved organicmore »« less

Authors:

; Bowden, Mark E.;

;

; Vergara, Mariana;

;

Pacific Northwest National Laboratory
University of Arizona
University of Texas at San Antonio
University of Arizona/Pacific Northwest National Laboratory

Publication Date:: Tue Dec 31 19:00:00 EST 2024

DOE Contract Number:: AC02-05CH11231

Research Org.:: Early Career Research Program: Watershed Perturbation-Response Traits Derived Through Ecological Theory - Worldwide Hydrobiogeochemistry Observation Network for Dynamic River Systems (WHONDRS)

Sponsoring Org.:: ESS-DIVE; U.S. DOE > Office of Science > Biological and Environmental Research (BER)

Subject:: 54 ENVIRONMENTAL SCIENCES; Aerobic respiration rate; Biogeochemistry; Catchment; DO; DOC; Dissolved organic carbon; EARTH SCIENCE > BIOSPHERE > ECOLOGICAL DYNAMICS > ECOSYSTEM FUNCTIONS > RESPIRATION RATE; EARTH SCIENCE > TERRESTRIAL HYDROSPHERE > SURFACE WATER; EARTH SCIENCE > TERRESTRIAL HYDROSPHERE > SURFACE WATER > SURFACE WATER CHEMISTRY; EARTH SCIENCE > TERRESTRIAL HYDROSPHERE > WATER QUALITY/WATER CHEMISTRY > GASES > DISSOLVED OXYGEN; EARTH SCIENCE > TERRESTRIAL HYDROSPHERE > WATER QUALITY/WATER CHEMISTRY > WATER CHARACTERISTICS > WATER TEMPERATURE; ESS-DIVE CSV File Formatting Guidelines Reporting Format; ESS-DIVE File Level Metadata Reporting Format; ESS-DIVE Hydrologic Monitoring Reporting Format; ESS-DIVE Sample ID and Metadata Reporting Format; ESS-DIVE Water-Soil-Sediment Chemistry Reporting Format; FTICR-MS; Freshwater; Gravimetric moisture; Hydraulic Exchange; Hydrobiogeochemical function; Hydrology; Hyporheic zone; IRES; Intermittent; Intermittent Rivers and Ephemeral Streams; Iron (II); NPOC; Non-perennial; Non-purgeable organic carbon; Percent carbon; Percent nitrogen; Percent saturation; River; River corridor; Sediment grain size; Stream; TDN; TN; Total dissolved nitrogen; VIE; Variably Inundated Ecosystem; Watershed; Wetting and drying; X-ray diffraction; XRD

OSTI Identifier:: 2529428

DOI:: https://doi.org/10.15485/2529428

Citation Formats


                    Danczak, Robert E., Bowden, Mark E., Crawford, Mekayla, Delgado, Dillman, Garayburu-Caruso, Vanessa A., Goldman, Amy E., Forbes, Brieanne, Laan, Maggi, Laub, Brian, McKever, Sophia A., Ocejo, Juan Alberto, Renteria, Lupita, Tfaily, Malak M., Vergara, Mariana, Veach, Allison, and Stegen, James C. WHONDRS River Corridor Sediment and Water Geochemistry and In Situ Sensor Data from 7 Perennial and 7 Intermittent Streams across San Antonio, Texas (v3).  United States: N. p., 2024. 
        Web.  doi:10.15485/2529428.

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                    Danczak, Robert E., Bowden, Mark E., Crawford, Mekayla, Delgado, Dillman, Garayburu-Caruso, Vanessa A., Goldman, Amy E., Forbes, Brieanne, Laan, Maggi, Laub, Brian, McKever, Sophia A., Ocejo, Juan Alberto, Renteria, Lupita, Tfaily, Malak M., Vergara, Mariana, Veach, Allison, & Stegen, James C. WHONDRS River Corridor Sediment and Water Geochemistry and In Situ Sensor Data from 7 Perennial and 7 Intermittent Streams across San Antonio, Texas (v3).  United States.  doi:https://doi.org/10.15485/2529428

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                    Danczak, Robert E., Bowden, Mark E., Crawford, Mekayla, Delgado, Dillman, Garayburu-Caruso, Vanessa A., Goldman, Amy E., Forbes, Brieanne, Laan, Maggi, Laub, Brian, McKever, Sophia A., Ocejo, Juan Alberto, Renteria, Lupita, Tfaily, Malak M., Vergara, Mariana, Veach, Allison, and Stegen, James C. 2024.  
"WHONDRS River Corridor Sediment and Water Geochemistry and In Situ Sensor Data from 7 Perennial and 7 Intermittent Streams across San Antonio, Texas (v3)".  United States.  doi:https://doi.org/10.15485/2529428.  https://www.osti.gov/servlets/purl/2529428. Pub date:Tue Dec 31 19:00:00 EST 2024

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@article{osti_2529428,

  title        = {WHONDRS River Corridor Sediment and Water Geochemistry and In Situ Sensor Data from 7 Perennial and 7 Intermittent Streams across San Antonio, Texas (v3)},

  author       = {Danczak, Robert E. and Bowden, Mark E. and Crawford, Mekayla and Delgado, Dillman and Garayburu-Caruso, Vanessa A. and Goldman, Amy E. and Forbes, Brieanne and Laan, Maggi and Laub, Brian and McKever, Sophia A. and Ocejo, Juan Alberto and Renteria, Lupita and Tfaily, Malak M. and Vergara, Mariana and Veach, Allison and Stegen, James C.},

  abstractNote = {This dataset supports a broader study examining the effects of intermittency on sediment respiration. The dataset provides sediment and surface water geochemistry and in situ sensor data from 7 perennial and 7 intermittent streams in San Antonio, Texas. Each stream/site was visited both in summer during base flow (July-September 2023) and winter during peak flow (January-February 2024). Related data were collected and will be published separately in collaboration with A. Veach. The data package was originally published in April 2025. It was updated in June 2025 (v2; modified and new files) and September 2025 (v3; modified files). See the change history section in the readme for more details. For details on how to navigate data packages generated by this project, see https://data.ess-dive.lbl.gov/portals/PNNLRiverCorridorSFA/About. This dataset is comprised of two folders of field photos and videos, one folder of raw Fourier transform ion cyclotron resonance mass spectrometry (FTICR-MS) data and one main data folder containing (1) file-level metadata; (2) data dictionary; (3) field metadata; (4) readme; (5) international generic sample number (IGSN) mapping file; (6) field protocol; (7) a subfolder with sample data; and (8) a subfolder with sensor data. The sample data subfolder contains (1) surface water and sediment dissolved organic carbon (DOC, measured as non-purgeable organic carbon, NPOC) data and averages; (2) surface water and sediment total nitrogen data and averages; (3) sediment grain size data; (4) sediment iron (II) data and averages; (5) wet sediment mass, dry sediment mass, water mass, and wet sediment volume in incubation and sediment ICR vials; (7) sediment incubation respiration rate data and averages; (8) normalized respiration rate data and averages; (9) methods codes; (10) sediment percent carbon and nitrogen; (11) sediment X-ray diffraction (XRD) data; (12) gravimetric moisture and averages; (13) a subfolder with sediment incubation respiration data, scripts, and plots; (14) surface water and sediment FTICR methods; and (15) a subfolder of 9.4 Tesla (9.4T) FTICR-MS data. This folder contains five subfolders, one containing the sediment .xml data files, one containing the water .xml files, one containing the sediment CoreMS output files, one containing the water CoreMS output files, and the other containing instructions and scripts for processing the files in CoreMS (https://github.com/EMSL-Computing/CoreMS). The sensor data subfolder contains (1) a subfolder with miniDOT dissolved oxygen and temperature data and plots; (2) miniDOT dissolved oxygen and temperature summary data; and (3) miniDOT installation methods. All files are .csv, .pdf, .R, .xml, .d, .html, .Rmd, .py, .cal, .json, .jpg, .jpeg, .png, .mov, or .mp4. CORRECTION: The data processing methods for FTICR described in “v3_WHONDRS_AV1_Methods_Codes.csv” mistakenly indicate that users should process the data in Formultitude. The corrected description should read: “Both unprocessed and processed data are provided to allow users flexibility in data processing. Instructions and scripts for processing the data using CoreMS are included.” CORRECTION: Carbon and nitrogen content are reported as percentages. The current column headers "01395_C_percent_per_mg" and "01397_N_percent_per_mg" are incorrect. These should read "01395_C_percent" and "01397_N_percent" and will be corrected in the next version of this data package.},

  doi          = {10.15485/2529428},

  journal      = {},

  number       = ,

  volume       = ,

  place        = {United States},

  year         = {Tue Dec 31 19:00:00 EST 2024},

  month        = {Tue Dec 31 19:00:00 EST 2024}

}

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DOI: https://doi.org/10.15485/2529428

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