Viral Annotation Pipeline in KBase

Bolduc, Benjamin; Wood-Charlson, Elisha; Dehal, Paramvir; Crockett, Zachary

doi:10.25982/59912.37/1635154

Title: Viral Annotation Pipeline in KBase

Dataset
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Abstract

This data analysis workflow demonstrates how to process a metagenome to identify viruses using VirSorter. Then, provides taxonomic classification using vConTACT2.

Authors:

;

The Ohio State Univ., Columbus, OH (United States); Lawrence Berkeley National Lab
Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States)

Publication Date:: Sun Jun 28 04:00:00 UTC 2020

Research Org.:: Lawrence Livermore National Laboratory (LLNL), Livermore, CA (United States); The Ohio State University; U.S. Department of Energy Systems Biology Knowledgebase; Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States); Oak Ridge National Laboratory (ORNL), Oak Ridge, TN (United States)

Sponsoring Org.:: USDOE Office of Science (SC), Biological and Environmental Research (BER) (SC-23)

Subject:: 59 BASIC BIOLOGICAL SCIENCES; Bioinformatics; Genomics; Virus

OSTI Identifier:: 1635154

DOI:: https://doi.org/10.25982/59912.37/1635154

Citation Formats


                    Bolduc, Benjamin, Wood-Charlson, Elisha, Dehal, Paramvir, and Crockett, Zachary. Viral Annotation Pipeline in KBase.  United States: N. p., 2020. 
        Web.  doi:10.25982/59912.37/1635154.

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                    Bolduc, Benjamin, Wood-Charlson, Elisha, Dehal, Paramvir, & Crockett, Zachary. Viral Annotation Pipeline in KBase.  United States.  doi:https://doi.org/10.25982/59912.37/1635154

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                    Bolduc, Benjamin, Wood-Charlson, Elisha, Dehal, Paramvir, and Crockett, Zachary. 2020.  
"Viral Annotation Pipeline in KBase".  United States.  doi:https://doi.org/10.25982/59912.37/1635154.  https://www.osti.gov/servlets/purl/1635154. Pub date:Sun Jun 28 04:00:00 UTC 2020

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@article{osti_1635154,

  title        = {Viral Annotation Pipeline in KBase},

  author       = {Bolduc, Benjamin and Wood-Charlson, Elisha and Dehal, Paramvir and Crockett, Zachary},

  abstractNote = {This data analysis workflow demonstrates how to process a metagenome to identify viruses using VirSorter. Then, provides taxonomic classification using vConTACT2.},

  doi          = {10.25982/59912.37/1635154},

  journal      = {},

  number       = ,

  volume       = ,

  place        = {United States},

  year         = {Sun Jun 28 04:00:00 UTC 2020},

  month        = {Sun Jun 28 04:00:00 UTC 2020}

}

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DOI: https://doi.org/10.25982/59912.37/1635154

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