KBase Narrative - Viral Analysis End-to-End

Bolduc, Benjamin

doi:10.25982/75811.86/1868934

Title: KBase Narrative - Viral Analysis End-to-End

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Abstract

This pipeline processes a single metagenomic dataset (downloaded from NCBI SRA) from the Global Ocean Viromes dataset, identifies the viral sequences using VirSorter, and subsequently classifies them with vConTACT2. Along the way there are several intermediary steps to convert files from one KBase object to another - and though some of these can be skipped for this particular dataset - we're explicitly doing them here as to be more easily generalized to other datasets.

Authors:

The Ohio State University; Lawrence Berkeley National Laboratory (LBNL)

Publication Date:: Thu May 12 00:00:00 EDT 2022

Research Org.:: U.S. Department of Energy Systems Biology Knowledgebase

Sponsoring Org.:: USDOE Office of Science (SC), Biological and Environmental Research (BER)

OSTI Identifier:: 1868934

DOI:: https://doi.org/10.25982/75811.86/1868934

Citation Formats


                    Bolduc, Benjamin. KBase Narrative - Viral Analysis End-to-End.  United States: N. p., 2022. 
        Web.  doi:10.25982/75811.86/1868934.

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                    Bolduc, Benjamin. KBase Narrative - Viral Analysis End-to-End.  United States.  doi:https://doi.org/10.25982/75811.86/1868934

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                    Bolduc, Benjamin. 2022.  
"KBase Narrative - Viral Analysis End-to-End".  United States.  doi:https://doi.org/10.25982/75811.86/1868934.  https://www.osti.gov/servlets/purl/1868934. Pub date:Thu May 12 00:00:00 EDT 2022

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@article{osti_1868934,

  title        = {KBase Narrative - Viral Analysis End-to-End},

  author       = {Bolduc, Benjamin},

  abstractNote = {This pipeline processes a single metagenomic dataset (downloaded from NCBI SRA) from the Global Ocean Viromes dataset, identifies the viral sequences using VirSorter, and subsequently classifies them with vConTACT2. Along the way there are several intermediary steps to convert files from one KBase object to another - and though some of these can be skipped for this particular dataset - we're explicitly doing them here as to be more easily generalized to other datasets.},

  doi          = {10.25982/75811.86/1868934},

  journal      = {},

  number       = ,

  volume       = ,

  place        = {United States},

  year         = {Thu May 12 00:00:00 EDT 2022},

  month        = {Thu May 12 00:00:00 EDT 2022}

}

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DOI: https://doi.org/10.25982/75811.86/1868934

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