KBase Narrative - Mse_Genome_Assembly

Rastegar, Kiarash

doi:10.25982/116829.47/1887425

Title: KBase Narrative - Mse_Genome_Assembly

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Abstract

Upon investigating the gut microbiome of mice for microbes related to Polycystic Ovary Syndrome (PCOS), our team found 2 metagenomes that could not be classified using alignment based methods. To further investigate microbial species from these samples, we used common MAGs workflow to create draft genomes which were then later taxonomically classified using GTDB-tk app.

Authors:

Rastegar, Kiarash

San Diego State University; Lawrence Berkeley National Laboratory (LBNL)

Publication Date:: Wed Sep 14 00:00:00 EDT 2022

Research Org.:: U.S. Department of Energy Systems Biology Knowledgebase

Sponsoring Org.:: USDOE Office of Science (SC), Biological and Environmental Research (BER)

OSTI Identifier:: 1887425

DOI:: https://doi.org/10.25982/116829.47/1887425

Citation Formats


                    Rastegar, Kiarash. KBase Narrative - Mse_Genome_Assembly.  United States: N. p., 2022. 
        Web.  doi:10.25982/116829.47/1887425.

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                    Rastegar, Kiarash. KBase Narrative - Mse_Genome_Assembly.  United States.  doi:https://doi.org/10.25982/116829.47/1887425

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                    Rastegar, Kiarash. 2022.  
"KBase Narrative - Mse_Genome_Assembly".  United States.  doi:https://doi.org/10.25982/116829.47/1887425.  https://www.osti.gov/servlets/purl/1887425. Pub date:Wed Sep 14 00:00:00 EDT 2022

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@article{osti_1887425,

  title        = {KBase Narrative - Mse_Genome_Assembly},

  author       = {Rastegar, Kiarash},

  abstractNote = {Upon investigating the gut microbiome of mice for microbes related to Polycystic Ovary Syndrome (PCOS), our team found 2 metagenomes that could not be classified using alignment based methods. To further investigate microbial species from these samples, we used common MAGs workflow to create draft genomes which were then later taxonomically classified using GTDB-tk app.},

  doi          = {10.25982/116829.47/1887425},

  journal      = {},

  number       = ,

  volume       = ,

  place        = {United States},

  year         = {Wed Sep 14 00:00:00 EDT 2022},

  month        = {Wed Sep 14 00:00:00 EDT 2022}

}

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DOI: https://doi.org/10.25982/116829.47/1887425

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