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Dyes designed for high sensitivity detection of double-stranded DNA

Patent ·
OSTI ID:872967

Novel fluorescent dyes are provided, characterized by having a fluorophore joined to a cationic chain. The dyes are found to provide for high enhancement upon binding to nucleic acid and have strong binding affinities to the nucleic acid, as compared to the fluorophore without the polycationic chain. The dyes find use in detection of dsDNA in gel electrophoresis and solution at substantially higher sensitivities using substantially less dye.

Research Organization:
University of California
DOE Contract Number:
FG03-91ER61125
Assignee:
Regents of University of California (Berkeley, CA)
Patent Number(s):
US 6054272
OSTI ID:
872967
Country of Publication:
United States
Language:
English

References (22)

Ethidium dimer: A new reagent for the fluorimetric determination of nucleic acids journal April 1979
Triacridine derivative: first DNA tris-intercalating ligand journal May 1983
Bisintercalation of ditercalinium into a d(CpGpApTpCpG)2 minihelix: A1H- and31P-NMR study journal December 1989
Stable fluorescent complexes of double-stranded DNA with bis-intercalating asymmetric cyanine dyes: properties and applications journal January 1992
Polyfunctional DNA intercalating agents journal July 1986
The Interaction of Intercalating Drugs with Nucleic Acids journal June 1981
Effect of B-Z transition and nucleic add structure on the conformational dynamics of bound ethidium dimer measured by hydrogen deuterium exchange kinetics journal January 1985
Modelling of the binding specificity in the interactions of cationic porphyrins with DNA journal January 1990
DNA bifunctional intercalators. 2. Fluorescence properties and DNA binding interaction of an ethidium homodimer and an acridine ethidium heterodimer. Appendix: Numerical solution of McGhee and von Hippel equations for competing ligands journal November 1978
Binding of 4',6-diamidino-2-phenylindole (DAPI) to GC and mixed sequences in DNA: intercalation of a classical groove-binding molecule journal June 1989
DNA bifunctional intercalators. 1. Synthesis and conformational properties of an ethidium homodimer and of an acridine ethidium heterodimer journal November 1978
Effects of ring substituents and linker chains on the bifunctional intercalation of diacridines into deoxyribonucleic acid journal December 1980
Dynamic structure of DNA complexes. Fluorometric measurement of hydrogen-deuterium exchange kinetics of DNA-bound ethidium dimer and acridine-ethidium dimer journal June 1983
Proton NMR study of the binding of bis(acridines) to d(AT)5.cntdot.d(AT)5. 2. Dynamic aspects journal March 1985
Enthalpy and entropy changes for the intercalation of small molecules to DNA. II. Ethidium and propidium fluoride journal August 1987
DNA tris intercalation: first acridine trimer with DNA affinity in the range of DNA regulatory proteins. Kinetic studies journal September 1985
A survey of cache coherence schemes for multiprocessors journal June 1990
Sequence-influenced interactions of oligoacridines with DNA detected by retarded gel electrophoretic migrations journal January 1988
Detection of two restriction endonuclease activities in Haemophilus parainfluenzae using analytical agarose-ethidium bromide electrophoresis journal July 1973
Detection of specific sequences among DNA fragments separated by gel electrophoresis journal November 1975
Immediate visualization of blotted RNA in Northern analysis journal January 1989
DNA intercalating compounds as potential antitumor agents. 2. Preparation and properties of 7H-pyridocarbazole dimers journal December 1980