Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape
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journal
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May 2016 |
Protein kinase and ribonuclease domains of IRE1 confer stress tolerance, vegetative growth, and reproductive development in Arabidopsis
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journal
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October 2013 |
Transcription factor interaction with COMPASS-like complex regulates histone H3K4 trimethylation for specific gene expression in plants
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February 2015 |
A Gateway-Compatible Yeast One-Hybrid System
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journal
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October 2004 |
Model-based Analysis of ChIP-Seq (MACS)
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journal
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January 2008 |
ChIPseeker: an R/Bioconductor package for ChIP peak annotation, comparison and visualization
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journal
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March 2015 |
Cutadapt removes adapter sequences from high-throughput sequencing reads
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May 2011 |
Endoplasmic Reticulum Stress Responses in Plants
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journal
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April 2013 |
Coupling and coordination in gene expression processes: a systems biology view
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journal
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January 2008 |
HY5, a positive regulator of light signaling, negatively controls the unfolded protein response in Arabidopsis
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February 2017 |
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
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January 2009 |
The G-Box Transcriptional Regulatory Code in Arabidopsis
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journal
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September 2017 |
TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
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journal
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January 2013 |
Enhanced yeast one-hybrid assays for high-throughput gene-centered regulatory network mapping
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journal
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October 2011 |
Tissue-Specific Transcriptomics Reveals an Important Role of the Unfolded Protein Response in Maintaining Fertility upon Heat Stress in Arabidopsis
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journal
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April 2017 |
Positional distribution of transcription factor binding sites in Arabidopsis thaliana
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journal
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April 2016 |
Transcriptional regulation of nitrogen-associated metabolism and growth
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journal
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October 2018 |
Molecular mechanisms driving transcriptional stress responses
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March 2018 |
Orchestrated response: a symphony of transcription factors for gene control
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October 2000 |
Enhanced Y1H assays for Arabidopsis
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journal
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October 2011 |
Integrative genomics viewer
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journal
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January 2011 |
The endoplasmic reticulum (ER) chaperone BiP is a master regulator of ER functions: Getting by with a little help from ERdj friends
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journal
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December 2018 |
Specification and regulation of vascular tissue identity in the Arabidopsis embryo
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January 2020 |
MYC Disrupts the Circadian Clock and Metabolism in Cancer Cells
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journal
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December 2015 |
Dimerization specificity of all 67 B-ZIP motifs in Arabidopsis thaliana: a comparison to Homo sapiens B-ZIP motifs
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journal
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June 2004 |
agriGO v2.0: a GO analysis toolkit for the agricultural community, 2017 update
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journal
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May 2017 |
deepTools2: a next generation web server for deep-sequencing data analysis
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journal
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April 2016 |
STREME: accurate and versatile sequence motif discovery
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journal
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March 2021 |
bZIP28 and NF-Y Transcription Factors Are Activated by ER Stress and Assemble into a Transcriptional Complex to Regulate Stress Response Genes in Arabidopsis
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journal
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March 2010 |
PlantDHS: a database for DNase I hypersensitive sites in plants
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journal
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September 2015 |
Roles of NAC transcription factors in the regulation of biotic and abiotic stress responses in plants
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journal
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January 2013 |
Genomic Analysis of the Unfolded Protein Response in Arabidopsis Shows Its Connection to Important Cellular Processes
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journal
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January 2003 |
HTSeq--a Python framework to work with high-throughput sequencing data
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journal
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September 2014 |
Heterodimerization between light-regulated and ubiquitously expressed Arabidopsis GBF bZIP proteins.
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journal
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April 1992 |
Systemic signaling contributes to the unfolded protein response of the plant endoplasmic reticulum
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journal
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September 2018 |
bZIP transcription factors in Arabidopsis
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journal
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March 2002 |
Time-Course Transcriptome Study Reveals Mode of bZIP Transcription Factors on Light Exposure in Arabidopsis
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journal
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March 2020 |
Fast gapped-read alignment with Bowtie 2
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March 2012 |
Functional Diversification of ER Stress Responses in Arabidopsis
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February 2020 |
Cytoscape: A Software Environment for Integrated Models of Biomolecular Interaction Networks
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journal
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November 2003 |
Life and death of a BiP substrate
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journal
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July 2010 |
Recovery from temporary endoplasmic reticulum stress in plants relies on the tissue-specific and largely independent roles of bZIP28 and bZIP60, as well as an antagonizing function of BAX-Inhibitor 1 upon the pro-adaptive signaling mediated by bZIP28
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journal
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December 2017 |
Genomic Regions Flanking E-Box Binding Sites Influence DNA Binding Specificity of bHLH Transcription Factors through DNA Shape
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journal
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April 2013 |
Quantifying similarity between motifs
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journal
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January 2007 |
Rapid, transient expression of fluorescent fusion proteins in tobacco plants and generation of stably transformed plants
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journal
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November 2006 |
DNA-binding specificities of plant transcription factors and their potential to define target genes
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journal
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January 2014 |
Cis-regulatory code of stress-responsive transcription in Arabidopsis thaliana
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journal
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August 2011 |
A temporal hierarchy underpins the transcription factor–DNA interactome of the maize UPR
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journal
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November 2020 |
A Genome-Scale Resource for the Functional Characterization of Arabidopsis Transcription Factors
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journal
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July 2014 |
Network‐based approaches for understanding gene regulation and function in plants
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journal
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August 2020 |
Heat induces the splicing by IRE1 of a mRNA encoding a transcription factor involved in the unfolded protein response in Arabidopsis
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journal
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April 2011 |
The Sequence Alignment/Map format and SAMtools
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journal
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June 2009 |
Advanced genomics identifies growth effectors for proteotoxic ER stress recovery in Arabidopsis thaliana
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journal
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January 2022 |
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
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journal
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December 2014 |
The Transcription Factor bZIP60 Links the Unfolded Protein Response to the Heat Stress Response in Maize
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journal
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August 2020 |
A transcription factor hierarchy defines an environmental stress response network
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journal
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November 2016 |
Salicylic acid-independent role of NPR1 is required for protection from proteotoxic stress in the plant endoplasmic reticulum
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journal
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May 2018 |