Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape
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journal
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May 2016 |
Protein kinase and ribonuclease domains of IRE1 confer stress tolerance, vegetative growth, and reproductive development in Arabidopsis
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October 2013 |
Complex heatmaps reveal patterns and correlations in multidimensional genomic data
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May 2016 |
MAPK phosphorylation-induced stabilization of ACS6 protein is mediated by the non-catalytic C-terminal domain, which also contains the cis-determinant for rapid degradation by the 26S proteasome pathway
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January 2008 |
Transmembrane E3 ligase RNF183 mediates ER stress-induced apoptosis by degrading Bcl-xL
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March 2018 |
Cutadapt removes adapter sequences from high-throughput sequencing reads
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May 2011 |
Salicylic acid-independent role of NPR1 is required for protection from proteotoxic stress in the plant endoplasmic reticulum
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May 2018 |
Endoplasmic Reticulum Stress Responses in Plants
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April 2013 |
Phenotypic Analysis of Arabidopsis Mutants: Electrolyte Leakage after Freezing Stress
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January 2010 |
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
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May 2010 |
HY5, a positive regulator of light signaling, negatively controls the unfolded protein response in Arabidopsis
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February 2017 |
XBP1 mRNA Is Induced by ATF6 and Spliced by IRE1 in Response to ER Stress to Produce a Highly Active Transcription Factor
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December 2001 |
The G-Box Transcriptional Regulatory Code in Arabidopsis
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September 2017 |
Evolution and Functions of Plant U-Box Proteins: From Protein Quality Control to Signaling
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May 2022 |
TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
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January 2013 |
Degradation of the Endoplasmic Reticulum by Autophagy during Endoplasmic Reticulum Stress in Arabidopsis
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November 2012 |
AtIRE1A/AtIRE1B and AGB1 independently control two essential unfolded protein response pathways in Arabidopsis
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October 2011 |
BI-1 Regulates an Apoptosis Pathway Linked to Endoplasmic Reticulum Stress
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August 2004 |
Molecular Characterization of Two Arabidopsis Ire1 Homologs, Endoplasmic Reticulum-Located Transmembrane Protein Kinases
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November 2001 |
AFP is a novel negative regulator of ABA signaling that promotes ABI5 protein degradation
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February 2003 |
Arabidopsis IRE1 catalyses unconventional splicing of bZIP60 mRNA to produce the active transcription factor
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July 2011 |
Transcriptional induction of genes encoding endoplasmic reticulum resident proteins requires a transmembrane protein kinase
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June 1993 |
Ubiquitination of Inositol-requiring Enzyme 1 (IRE1) by the E3 Ligase CHIP Mediates the IRE1/TRAF2/JNK Pathway
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October 2014 |
AlphaFold Protein Structure Database: massively expanding the structural coverage of protein-sequence space with high-accuracy models
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November 2021 |
AtBAG7, an Arabidopsis Bcl-2-associated athanogene, resides in the endoplasmic reticulum and is involved in the unfolded protein response
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March 2010 |
Highly accurate protein structure prediction with AlphaFold
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July 2021 |
Identification of markers linked to disease-resistance genes by bulked segregant analysis: a rapid method to detect markers in specific genomic regions by using segregating populations.
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November 1991 |
Transcriptional competition shapes proteotoxic ER stress resolution
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May 2022 |
Arabidopsis
TBP-ASSOCIATED FACTOR 12 ortholog NOBIRO6 controls root elongation with unfolded protein response cofactor activity
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February 2022 |
CPR5 modulates salicylic acid and the unfolded protein response to manage tradeoffs between plant growth and stress responses
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February 2017 |
The Cullin-RING Ubiquitin-Protein Ligases
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June 2011 |
ABA-Hypersensitive Germination3 Encodes a Protein Phosphatase 2C (AtPP2CA) That Strongly Regulates Abscisic Acid Signaling during Germination among Arabidopsis Protein Phosphatase 2Cs
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December 2005 |
The Membrane-Associated Transcription Factor NAC089 Controls ER-Stress-Induced Programmed Cell Death in Plants
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March 2014 |
Quantitating Plant MicroRNA-Mediated Target Repression Using a Dual-Luciferase Transient Expression System
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book
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January 2015 |
agriGO v2.0: a GO analysis toolkit for the agricultural community, 2017 update
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May 2017 |
The Role and Regulation of ABI5 (ABA-Insensitive 5) in Plant Development, Abiotic Stress Responses and Phytohormone Crosstalk
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December 2016 |
STREME: accurate and versatile sequence motif discovery
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March 2021 |
bZIP28 and NF-Y Transcription Factors Are Activated by ER Stress and Assemble into a Transcriptional Complex to Regulate Stress Response Genes in Arabidopsis
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journal
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March 2010 |
Genomic Analysis of the Unfolded Protein Response in Arabidopsis Shows Its Connection to Important Cellular Processes
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journal
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January 2003 |
Stress response proteins NRP1 and NRP2 are pro-survival factors that inhibit cell death during ER stress
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July 2021 |
HTSeq--a Python framework to work with high-throughput sequencing data
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September 2014 |
Signaling cell death from the endoplasmic reticulum stress response
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April 2011 |
Fast gapped-read alignment with Bowtie 2
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March 2012 |
The Protein Phosphatase AtPP2CA Negatively Regulates Abscisic Acid Signal Transduction in Arabidopsis, and Effects of abh1 on AtPP2CA mRNA
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December 2005 |
SHOREmap: simultaneous mapping and mutation identification by deep sequencing
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August 2009 |
Functional Diversification of ER Stress Responses in Arabidopsis
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February 2020 |
Biochemical Insights on Degradation ofArabidopsisDELLA Proteins Gained From a Cell-Free Assay System
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journal
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August 2009 |
Sumoylation of transcription factor MYB30 by the small ubiquitin-like modifier E3 ligase SIZ1 mediates abscisic acid response in
Arabidopsis thaliana
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July 2012 |
Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana
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December 1998 |
Rapid, transient expression of fluorescent fusion proteins in tobacco plants and generation of stably transformed plants
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November 2006 |
Fast, scalable generation of high‐quality protein multiple sequence alignments using Clustal Omega
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January 2011 |
The Logic of the 26S Proteasome
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journal
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May 2017 |
26S proteasomes become stably activated upon heat shock when ubiquitination and protein degradation increase
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journal
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June 2022 |
Transcriptomic response of Arabidopsis thaliana to tunicamycin-induced endoplasmic reticulum stress
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journal
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January 2010 |
An Endoplasmic Reticulum Stress Response in Arabidopsis Is Mediated by Proteolytic Processing and Nuclear Relocation of a Membrane-Associated Transcription Factor, bZIP28
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journal
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December 2007 |
An Arsenite-Inducible 19S Regulatory Particle-Associated Protein Adapts Proteasomes to Proteotoxicity
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journal
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September 2006 |
The TRANSPLANTA collection of Arabidopsis lines: a resource for functional analysis of transcription factors based on their conditional overexpression
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February 2014 |
A gene expression map of Arabidopsis thaliana development
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journal
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April 2005 |
The Unfolded Protein Response: From Stress Pathway to Homeostatic Regulation
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journal
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November 2011 |
Heat induces the splicing by IRE1 of a mRNA encoding a transcription factor involved in the unfolded protein response in Arabidopsis
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journal
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April 2011 |
ArabidopsisProtein Disulfide Isomerase-5 Inhibits Cysteine Proteases during Trafficking to Vacuoles before Programmed Cell Death of the Endothelium in Developing Seeds
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journal
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August 2008 |
Genome-wide profiling of stored mRNA in Arabidopsis thaliana seed germination: epigenetic and genetic regulation of transcription in seed: Molecular profiling in Arabidopsis seed
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journal
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February 2005 |
Proteasome-dependent endoplasmic reticulum-associated protein degradation: An unconventional route to a familiar fate
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November 1996 |
Abscisic acid and its role in the modulation of plant growth, development, and yield stability
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journal
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December 2022 |
The Sequence Alignment/Map format and SAMtools
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journal
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June 2009 |
The ubiquitin/26S proteasome pathway, the complex last chapter in the life of many plant proteins
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journal
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March 2003 |
Advanced genomics identifies growth effectors for proteotoxic ER stress recovery in Arabidopsis thaliana
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journal
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January 2022 |
The RING finger E3 ligases PIR1 and PIR2 mediate PP2CA degradation to enhance abscisic acid response in Arabidopsis
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journal
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September 2019 |
Abiotic stress responses in plants
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journal
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September 2021 |
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
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journal
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December 2014 |
Using ggtree to Visualize Data on Tree‐Like Structures
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journal
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March 2020 |
Defects in IRE1 enhance cell death and fail to degrade mRNAs encoding secretory pathway proteins in the Arabidopsis unfolded protein response
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journal
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March 2013 |