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Draft Genome Assembly of Pseudomonas aeruginosa Quality Control Reference Strain Boston 41501

Journal Article · · Genome Announcements
 [1];  [2];  [2];  [3];  [2];  [2];  [4];  [3];  [4];  [2];  [4];  [3];  [2];  [2]
  1. U.S. Army Medical Research Institute of Infectious Diseases (USAMRIID), Fort Detrick, MD (United States). Diagnostic Systems Division (DSD); DOE/OSTI
  2. Los Alamos National Lab. (LANL), Los Alamos, NM (United States)
  3. U.S. Army Edgewood Chemical Biological Center (ECBC), Aberdeen Proving Ground, Aberdeen, MD (United States)
  4. U.S. Army Medical Research Institute of Infectious Diseases (USAMRIID), Fort Detrick, MD (United States). Diagnostic Systems Division (DSD)
+ Show Author Affiliations
We present the scaffolded genome assembly of Pseudomonas aeruginosa Boston 41501, now publicly available in GenBank (JOVK00000000) in 10 contigs placed into a single scaffold. The 6.82-Mbp genome contains 66.1% GC content and 6,295 coding sequences, including type 4 pilus and type 3 secretion system production genes.
Research Organization:
Los Alamos National Laboratory (LANL), Los Alamos, NM (United States)
Sponsoring Organization:
Defense Threat Reduction Agency (DTRA), Joint Science and Technology Office; USDOE Office of Science (SC), Biological and Environmental Research (BER). Biological Systems Science Division
OSTI ID:
1629264
Journal Information:
Genome Announcements, Journal Name: Genome Announcements Journal Issue: 5 Vol. 2; ISSN 2169-8287
Publisher:
American Society for MicrobiologyCopyright Statement
Country of Publication:
United States
Language:
English

References (7)

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs journal February 2008
ALLPATHS: De novo assembly of whole-genome shotgun microreads journal February 2008
Base-Calling of Automated Sequencer Traces Using Phred.  I. Accuracy Assessment journal March 1998
Base-Calling of Automated Sequencer Traces Using Phred. II. Error Probabilities journal March 1998
Consed: A Graphical Tool for Sequence Finishing journal March 1998
Pseudomonas aeruginosa : new insights into pathogenesis and host defenses journal March 2013
Genome-Wide Identification of Pseudomonas aeruginosa Virulence-Related Genes Using a Caenorhabditis elegans Infection Model journal July 2012

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59 BASIC BIOLOGICAL SCIENCES