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Insights into Land Plant Evolution Garnered from the Marchantia polymorpha Genome

Journal Article · · Cell
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  1. Monash Univ. Melbourne (Australia)
  2. Kyoto Univ., Kyoto (Japan)
  3. Kindai Univ., Wakayama (Japan)
  4. USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States); HudsonAlpha Institute of Biotechnology, Huntsville, AL (United States)
  5. USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States)
  6. Kobe Univ., Kobe (Japan)
  7. Research Organization of Information and Systems, Mishima (Japan)
  8. Austrian Academy of Sciences, Vienna Biocenter (VBC), Vienna (Austria)
  9. Nara Institute of Science and Technology, Nara (Japan)
  10. Univ. of Osnabrück, Osnabrück (Germany)
  11. Univ. Veracruzana, Veracruz (Mexico)
  12. Monash Univ., Melbourne (Australia)
  13. Univ. of Cambridge, Cambridge (United Kingdom)
  14. National Lab. of Genomics for Biodiversity, Guanajuato (Mexico)
  15. Univ. of Oxford, Oxford (United Kingdom)
  16. Univ. of Tennessee, Knoxville, TN (United States)
  17. The New Zealand Institute for Plant & Food Research Ltd., Palmerston North (New Zealand)
  18. Nara Inst. of Science and Technology, Nara (Japan)
  19. Monash Univ., Melbourne (Australia); Univ. of Osnabrück, Osnabrück (Germany)
  20. Monash Univ., Melbourne (Australia); Uppsala Univ., Uppsala (Sweden)
  21. National Inst. of Genetics, Mishima (Japan)
  22. Vienna Biocenter Core Facilities (VBCF), Vienna (Austria)
  23. Univ. de Montpellier, Montpellier (France)
  24. Univ.of Zurich, Zürich (Switzerland)
  25. The Univ. of Tokyo, Tokyo (Japan)
  26. Monash Univ., Melbourne (Australia); Nagoya Univ., Nagoya (Japan); Gakushuin Univ., Tokyo (Japan)
  27. Okayama Univ., Okayama (Japan)
  28. Nagoya Univ., Nagoya (Japan)
  29. National Inst. for Basic Biology, Okazaki (Japan); The Univ. of Tokyo, Tokyo (Japan)
  30. Tohoku Univ., Sendai (Japan)
  31. Austrian Academy of Sciences, Vienna (Austria); Univ. of Kentucky, Lexington, KY (United States)
  32. Gakushuin Univ., Tokyo (Japan); Nagoya Univ., Chikusa, Nagoya (Japan)
  33. Tokyo Univ. of Agriculture, Tokyo (Japan)
  34. Uppsala Univ., Uppsala (Sweden)
  35. National Taiwan Univ., Taipei (Taiwan)
  36. Inst. de Ecología, Veracruz (Mexico)
  37. Cold Spring Harbor Lab., Spring Harbor, NY (United States)
  38. Univ. Autónoma de Madrid, Madrid (Spain)
  39. The Univ. of Arizona, Tucson, AZ (United States)
  40. National Institute of Genetics, Mishima (Japan); Kazusa DNA Research Inst., Chiba (Japan)
  41. RIKEN Center for Sustainable Resource Science, Yokohama (Japan); Max Planck Inst. for Plant Breeding Research, Cologne (Germany)
  42. Tokyo Metropolitan Univ., Tokyo (Japan)
  43. Univ. of Minnesota, St. Paul, MN (United States)
  44. Univ. of Zurich, Zürich (Switzerland)
  45. Kumamoto Univ., Kumamoto (Japan)
  46. Univ. of Zurich, Zurich (Switzerland)
  47. The Univ. of Tokyo, Chiba (Japan)
  48. Kyoto Univ., Gokasho (Japan)
  49. Univ. Ulm, Ulm (Germany)
  50. Saitama Univ., Saitama (Japan)
  51. National Inst. for Basic Biology, Okazaki (Japan)
  52. Kyoto Univ., Uji (Japan)
  53. RIKEN Center for Sustainable Resource Science, Yokohama (Japan)
+ Show Author Affiliations
The evolution of land flora transformed the terrestrial environment. Land plants evolved from an ancestral charophycean alga from which they inherited developmental, biochemical, and cell biological attributes. Additional biochemical and physiological adaptations to land, and a life cycle with an alternation between multicellular haploid and diploid generations that facilitated efficient dispersal of desiccation tolerant spores, evolved in the ancestral land plant. We analyzed the genome of the liverwort Marchantia polymorpha, a member of a basal land plant lineage. Relative to charophycean algae, land plant genomes are characterized by genes encoding novel biochemical pathways, new phytohormone signaling pathways (notably auxin), expanded repertoires of signaling pathways, and increased diversity in some transcription factor families. Compared with other sequenced land plants, M. polymorpha exhibits low genetic redundancy in most regulatory pathways, with this portion of its genome resembling that predicted for the ancestral land plant. PAPERCLIP.
Research Organization:
Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States); Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States). National Energy Research Scientific Computing Center (NERSC); Univ. of California, Oakland, CA (United States)
Sponsoring Organization:
USDOE; USDOE Office of Science (SC), Biological and Environmental Research (BER) (SC-23)
Grant/Contract Number:
AC02-05CH11231
OSTI ID:
1543518
Alternate ID(s):
OSTI ID: 1572782
Journal Information:
Cell, Journal Name: Cell Journal Issue: 2 Vol. 171; ISSN 0092-8674
Publisher:
ElsevierCopyright Statement
Country of Publication:
United States
Language:
English

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Additional file 11 of Evolution and functional diversification of catalase genes in the green lineage dataset January 2022
Additional file 12 of Evolution and functional diversification of catalase genes in the green lineage dataset January 2022
Additional file 1 of Evolution and functional diversification of catalase genes in the green lineage image January 2022
Additional file 2 of Evolution and functional diversification of catalase genes in the green lineage image January 2022
Additional file 3 of Evolution and functional diversification of catalase genes in the green lineage image January 2022
Additional file 4 of Evolution and functional diversification of catalase genes in the green lineage image January 2022
Additional file 6 of Evolution and functional diversification of catalase genes in the green lineage dataset January 2022
Additional file 7 of Evolution and functional diversification of catalase genes in the green lineage dataset January 2022
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Auronidins are a previously unreported class of flavonoid pigments that challenges when anthocyanin biosynthesis evolved in plants journal September 2019
A ligand-independent origin of abscisic acid perception journal November 2019
Protamines from liverwort are produced by post-translational cleavage and C-terminal di-aminopropanelation of several male germ-specific H1 histones journal November 2019
Fissures and pores in the capsule walls and hydrophobic elaters in Haplomitrium : a transmission and cryo-scanning electron microscope study journal October 2019
Cytokinin signaling coordinates development of diverse organs in Marchantia polymorpha journal September 2019
The complete chloroplast genome sequence of Dumortiera hirsuta (Sw.) Nees (Marchantiophyta, Dumortieraceae) journal January 2019
The complete mitochondrial genome of Korean Marchantia polymorpha subsp. ruderalis Bischl. & Boisselier: inverted repeats on mitochondrial genome between Korean and Japanese isolates journal January 2019
The complete chloroplast genome of Korean Marchantia polymorpha subsp. ruderalis Bischl. & Boisselier: low genetic diversity between Korea and Japan journal January 2019
The complete mitochondrial genome of Dumortiera hirsuta (Sw.) Nees (Dumortieraceae, Marchantiophyta) journal January 2019
Comprehensive Genome-Wide Classification Reveals That Many Plant-Specific Transcription Factors Evolved in Streptophyte Algae journal December 2017
Light-dependent spatiotemporal control of plant cell development and organelle movement in fern gametophytes journal December 2018
Evolutionary history and structure of nuclear matrix constituent proteins, the plant analogues of lamins journal March 2019
Jasmonate action in plant defense against insects journal April 2019
Jasmonate and auxin perception: how plants keep F-boxes in check journal June 2019
The role of P-type IIA and P-type IIB Ca2+-ATPases in plant development and growth journal November 2019
Origin of Gibberellin-Dependent Transcriptional Regulation by Molecular Exploitation of a Transactivation Domain in DELLA Proteins journal January 2019
RAB GTPases in the Basal Land Plant Marchantia polymorpha journal February 2018
Loss of CG methylation in Marchantia polymorpha causes disorganization of cell division and reveals unique DNA methylation regulatory mechanisms of non-CG methylation journal August 2018
Cytokinin Signaling Is Essential for Organ Formation in Marchantia polymorpha journal May 2019
Regulation of Photosynthetic Carbohydrate Metabolism by a Raf-Like Kinase in the Liverwort Marchantia polymorpha journal December 2019
Ancient plants with ancient fungi: liverworts associate with early-diverging arbuscular mycorrhizal fungi journal October 2018
Phytophthora palmivora establishes tissue-specific intracellular infection structures in the earliest divergent land plant lineage posted_content September 2017
COP1 destabilizes DELLA proteins in Arabidopsis posted_content January 2020
Improved G-AgarTrap: A highly efficient transformation method for intact gemmalings of the liverwort Marchantia polymorpha posted_content May 2018
Loss of CG methylation in Marchantia Polymorpha causes disorganization of cell division and reveals unique DNA methylation regulatory mechanisms of non-CG methylation posted_content July 2018
Origin of gibberellin-dependent transcriptional regulation by molecular exploitation of a transactivation domain in DELLA proteins posted_content December 2018
Evolution of vascular plants through redeployment of ancient developmental regulators posted_content May 2019
An ancestral signalling pathway is conserved in plant lineages forming intracellular symbioses posted_content October 2019
Chromatin organization in early land plants reveals an ancestral association between H3K27me3, transposons, and constitutive heterochromatin posted_content November 2019
Metatranscriptomic and metabolite profiling reveals vertical heterogeneity within a Zygnema green algal mat from Svalbard (High Arctic) journal September 2019
Protein S ‐Nitrosylation in plants: Current progresses and challenges journal March 2019
The origin and evolution of mycorrhizal symbioses: from palaeomycology to phylogenomics journal March 2018
Class C ARFs evolved before the origin of land plants and antagonize differentiation and developmental transitions in Marchantia polymorpha journal March 2018
Evolutionary history of HOMEODOMAIN LEUCINE ZIPPER transcription factors during plant transition to land journal April 2018
Physcomitrella patens MAX2 characterization suggests an ancient role for this F-box protein in photomorphogenesis rather than strigolactone signalling journal May 2018
MicroRNAs in Marchantia polymorpha journal June 2018
Origin and evolution of the plant immune system journal January 2019
DNA methylation in Marchantia polymorpha journal April 2019
Neofunctionalisation of basic helix−loop−helix proteins occurred when embryophytes colonised the land journal April 2019
Minimal auxin sensing levels in vegetative moss stem cells revealed by a ratiometric reporter journal June 2019
Mp TCP 1 controls cell proliferation and redox processes in Marchantia polymorpha journal October 2019
Occurrence of land‐plant‐specific glycerol‐3‐phosphate acyltransferases is essential for cuticle formation and gametophore development in Physcomitrella patens journal December 2019
UVR8-mediated induction of flavonoid biosynthesis for UVB tolerance is conserved between the liverwort Marchantia polymorpha and flowering plants journal August 2018
A pseudomolecule‐scale genome assembly of the liverwort Marchantia polymorpha journal December 2019
Phylogenomic synteny network analyses reveal ancestral transpositions of auxin response factor genes in plants journal May 2020
ANGUSTIFOLIA contributes to the regulation of three-dimensional morphogenesis in the liverwort Marchantia polymorpha journal August 2018
Efficient CRISPR/Cas9-based genome editing and its application to conditional genetic analysis in Marchantia polymorpha journal October 2018
A cis ‐acting bidirectional transcription switch controls sexual dimorphism in the liverwort journal January 2019
An ancient antisense‐driven RNA switch drives plant sex determination journal February 2019
Insights into land plant evolution garnered from the Marchantia polymorpha genome, supplementary material dataset January 2017
Phytophthora palmivora establishes tissue-specific intracellular infection structures in the earliest divergent land plant lineage. text January 2018
One thousand plant transcriptomes and the phylogenomics of green plants text January 2019
Anthoceros genomes illuminate the origin of land plants and the unique biology of hornworts. journalarticle January 2020
Identification and Biochemical Characterization of the Serine Biosynthetic Enzyme 3-Phosphoglycerate Dehydrogenase in Marchantia polymorpha journal July 2018
Getting to the Roots: A Developmental Genetic View of Root Anatomy and Function From Arabidopsis to Lycophytes journal September 2018
Evolution of the Symbiosis-Specific GRAS Regulatory Network in Bryophytes journal November 2018
Evolution Analysis of the Fasciclin-Like Arabinogalactan Proteins in Plants Shows Variable Fasciclin-AGP Domain Constitutions journal April 2019
Evolutionary Analysis of GH3 Genes in Six Oryza Species/Subspecies and Their Expression under Salinity Stress in Oryza sativa ssp. japonica journal January 2019
Extensive epigenetic reprogramming during the life cycle of Marchantia polymorpha text January 2018
A pseudomolecule‐scale genome assembly of the liverwort Marchantia polymorpha text January 2020
Anthoceros genomes illuminate the origin of land plants and the unique biology of hornworts text January 2020
Negative regulation of conserved RSL class I bHLH transcription factors evolved independently among land plants journal August 2018
A pseudomolecule‐scale genome assembly of the liverwort Marchantia polymorpha text January 2020

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Related Subjects

59 BASIC BIOLOGICAL SCIENCES
Biochemistry & Molecular Biology
Cell Biology
Marchantia polymorpha
auxin
charophycean algae
land plant evolution
sex chromosome