Draft Genome Sequences of Four Rhodobacter sphaeroides Strains Isolated from a Marine Ecosystem

Guzman, Michael S.; Bose, Arpita; Thrash, ed., J. Cameron

doi:10.1128/MRA.01648-18

Draft Genome Sequences of Four Rhodobacter sphaeroides Strains Isolated from a Marine Ecosystem

Journal Article · Wed Jan 16 23:00:00 EST 2019 · Microbiology Resource Announcements

DOI:https://doi.org/10.1128/MRA.01648-18· OSTI ID:1491050

Guzman, Michael S. ^[1]; Bose, Arpita ^[1]; Thrash, ed., J. Cameron

Department of Biology, Washington University in St. Louis, St. Louis, Missouri, USA

Rhodobacter sphaeroides is an alphaproteobacterium found in freshwater and marine ecosystems. To better understand the metabolic diversity within this species, we isolated and sequenced four R. sphaeroides isolates obtained from Trunk River in Woods Hole, Massachusetts.

View Journal Article

Sponsoring Organization:: USDOE

Grant/Contract Number:: SC0014613

OSTI ID:: 1491050

Journal Information:: Microbiology Resource Announcements, Journal Name: Microbiology Resource Announcements Journal Issue: 3 Vol. 8; ISSN 2576-098X

Publisher:: American Society for MicrobiologyCopyright Statement

Country of Publication:: United States

Language:: English

References (19)

Reductive effect of H 2 uptake and poly-β-hydroxybutyrate formation on nitrogenase-mediated H 2 accumulation of Rhodobacter sphaeroides according to light intensity I. -H., Lee; J., Park; D., Kho Applied Microbiology and Biotechnology, Vol. 60, Issue 1-2 https://doi.org/10.1007/s00253-002-1097-2	journal	October 2002
Basic local alignment search tool Altschul, Stephen F.; Gish, Warren; Miller, Webb Journal of Molecular Biology, Vol. 215, Issue 3, p. 403-410 https://doi.org/10.1016/S0022-2836(05)80360-2	journal	October 1990
Aspects of the metabolism of hydrogen production by Rhodobacter sphaeroides Koku, H. International Journal of Hydrogen Energy, Vol. 27, Issue 11-12 https://doi.org/10.1016/S0360-3199(02)00127-1	journal	November 2002
Heavy metal ion influence on the photosynthetic growth of Rhodobacter sphaeroides Giotta, Livia; Agostiano, Angela; Italiano, Francesca Chemosphere, Vol. 62, Issue 9 https://doi.org/10.1016/j.chemosphere.2005.06.014	journal	March 2006
The home stretch, a first analysis of the nearly completed genome of Rhodobacter sphaeroides 2.4.1 Mackenzie, Chris; Choudhary, Madhusudan; Larimer, Frank W. Photosynthesis Research, Vol. 70, Issue 1, p. 19-41 https://doi.org/10.1023/A:1013831823701	journal	September 2001
Chromate reduction by Rhodobacter sphaeroides Nepple, B. B.; Kessi, J.; Bachofen, R. Journal of Industrial Microbiology and Biotechnology, Vol. 25, Issue 4 https://doi.org/10.1038/sj.jim.7000049	journal	October 2000
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing Bankevich, Anton; Nurk, Sergey; Antipov, Dmitry Journal of Computational Biology, Vol. 19, Issue 5 https://doi.org/10.1089/cmb.2012.0021	journal	May 2012
Trimmomatic: a flexible trimmer for Illumina sequence data Bolger, Anthony M.; Lohse, Marc; Usadel, Bjoern Bioinformatics, Vol. 30, Issue 15 https://doi.org/10.1093/bioinformatics/btu170	journal	April 2014
MeDuSa: a multi-draft based scaffolder Bosi, Emanuele; Donati, Beatrice; Galardini, Marco Bioinformatics, Vol. 31, Issue 15 https://doi.org/10.1093/bioinformatics/btv171	journal	March 2015
NCBI prokaryotic genome annotation pipeline Tatusova, Tatiana; DiCuccio, Michael; Badretdin, Azat Nucleic Acids Research, Vol. 44, Issue 14 https://doi.org/10.1093/nar/gkw569	journal	June 2016
Rhodovulum iodosum sp. nov. and Rhodovulum robiginosum sp. nov., two new marine phototrophic ferrous-iron-oxidizing purple bacteria Straub, K. L.; Rainey, F. A.; Widdel, F. International Journal of Systematic Bacteriology, Vol. 49, Issue 2 https://doi.org/10.1099/00207713-49-2-729	journal	April 1999
Revised Sequence and Annotation of the Rhodobacter sphaeroides 2.4.1 Genome Kontur, W. S.; Schackwitz, W. S.; Ivanova, N. Journal of Bacteriology, Vol. 194, Issue 24 https://doi.org/10.1128/JB.01214-12	journal	December 2012
Complete Genome Sequence of Rhodobacter sphaeroides KD131 Lim, Si-Kyu; Kim, Sang Jun; Cha, Sun Ho Journal of Bacteriology, Vol. 191, Issue 3 https://doi.org/10.1128/JB.01565-08	journal	November 2008
Identification and molecular genetic analysis of multiple loci contributing to high-level tellurite resistance in Rhodobacter sphaeroides 2.4.1. O'Gara, J. P.; Gomelsky, M.; Kaplan, S. Applied and environmental microbiology, Vol. 63, Issue 12 https://doi.org/10.1128/aem.63.12.4713-4720.1997	journal	January 1997
Isolation and characterization of the nifUSVW-rpoN gene cluster from Rhodobacter sphaeroides. Meijer, W. G.; Tabita, F. R. Journal of Bacteriology, Vol. 174, Issue 12 https://doi.org/10.1128/jb.174.12.3855-3866.1992	journal	June 1992
Identification of intrinsic high-level resistance to rare-earth oxides and oxyanions in members of the class Proteobacteria: characterization of tellurite, selenite, and rhodium sesquioxide reduction in Rhodobacter sphaeroides. Moore, M. D.; Kaplan, S. Journal of Bacteriology, Vol. 174, Issue 5 https://doi.org/10.1128/jb.174.5.1505-1514.1992	journal	March 1992
Cloning and characterization of nnrR, whose product is required for the expression of proteins involved in nitric oxide metabolism in Rhodobacter sphaeroides 2.4.3. Tosques, I. E.; Shi, J.; Shapleigh, J. P. Journal of Bacteriology, Vol. 178, Issue 16 https://doi.org/10.1128/jb.178.16.4958-4964.1996	journal	August 1996
Characterization of the nitric oxide reductase-encoding region in Rhodobacter sphaeroides 2.4.3. Bartnikas, T. B.; Tosques, I. E.; Laratta, W. P. Journal of Bacteriology, Vol. 179, Issue 11 https://doi.org/10.1128/jb.179.11.3534-3540.1997	journal	June 1997
iRsp1095: A genome-scale reconstruction of the Rhodobacter sphaeroides metabolic network Imam, Saheed; Yilmaz, Safak; Sohmen, Ugur BMC Systems Biology, Vol. 5, Issue 1 https://doi.org/10.1186/1752-0509-5-116	journal	January 2011

Similar Records

Draft Genome Sequence of the Free-Living, Iridescent Bacterium Tenacibaculum mesophilum Strain ECR

Journal Article · Wed Jan 06 23:00:00 EST 2021 · Microbiology Resource Announcements · OSTI ID:1755976

Draft Genome Sequence of Scheffersomyces spartinae ARV011, a Marine Yeast Isolate

Journal Article · Wed Nov 10 23:00:00 EST 2021 · Microbiology Resource Announcements · OSTI ID:1829919

Draft Genome Sequences of Gammaproteobacterial Methanotrophs Isolated from Marine Ecosystems

Journal Article · Wed Feb 24 23:00:00 EST 2016 · Genome Announcements · OSTI ID:1786406

Draft Genome Sequences of Four Rhodobacter sphaeroides Strains Isolated from a Marine Ecosystem

Citation Formats

References (19)

Similar Records

Related Subjects