Skip to main content
OSTI.GOVU.S. Department of Energy Office of Scientific and Technical Information
U.S. Department of Energy
Office of Scientific and Technical Information
 

Online Supplement for Boolean dynamics of genetic regulatory networks inferred from microarray time series data

Program Document · · Bioinformatics
; ; ;

Abstract not provided.

Research Organization:
Sandia National Laboratories (SNL-NM), Albuquerque, NM (United States); Sandia National Laboratories, Livermore, CA
Sponsoring Organization:
USDOE National Nuclear Security Administration (NNSA)
DOE Contract Number:
AC04-94AL85000
OSTI ID:
1427004
Report Number(s):
SAND2007-0438J; 524010
Journal Information:
Bioinformatics, Journal Name: Bioinformatics Journal Issue: 7 Vol. 23; ISSN 1367-4803
Publisher:
Oxford University Press
Country of Publication:
United States
Language:
English

References (31)

A new dynamic Bayesian network (DBN) approach for identifying gene regulatory networks from time course microarray data journal August 2004
Gene expression profiling, genetic networks, and cellular states: an integrating concept for tumorigenesis and drug discovery journal August 1999
Inferring qualitative relations in genetic networks and metabolic pathways journal August 2000
Metabolic stability and epigenesis in randomly constructed genetic nets journal March 1969
Quantitative modeling of stochastic systems in molecular biology by using stochastic Petri nets journal June 1998
Interpreting patterns of gene expression with self-organizing maps: Methods and application to hematopoietic differentiation journal March 1999
LPS induces apoptosis in macrophages mostly through the autocrine production of TNF-α journal June 2000
Relationships between probabilistic Boolean networks and dynamic Bayesian networks as models of gene regulatory networks journal April 2006
Mathematical Modeling of Gene Networks journal June 2000
Stability of the Kauffman model journal December 2001
On Construction of Stochastic Genetic Networks Based on gene Expression Sequences journal August 2005
Inferences, questions and possibilities in Toll-like receptor signalling journal July 2004
Shape-Dependent Control of Cell Growth, Differentiation, and Apoptosis: Switching between Attractors in Cell Regulatory Networks journal November 2000
Using Bayesian Networks to Analyze Expression Data journal August 2000
From Boolean to probabilistic Boolean networks as models of genetic regulatory networks journal November 2002
Coupled two-way clustering analysis of gene microarray data journal October 2000
A time-series biclustering algorithm for revealing co-regulated genes conference January 2005
Steady-State Analysis of Genetic Regulatory Networks Modelled by Probabilistic Boolean Networks journal January 2003
Counting and Classifying Attractors in High Dimensional Dynamical Systems journal December 1996
Probabilistic Boolean networks: a rule-based uncertainty model for gene regulatory networks journal February 2002
Modeling and Simulation of Genetic Regulatory Systems: A Literature Review journal January 2002
Biology of the Interleukin-2 Receptor book February 1998
Cluster analysis and display of genome-wide expression patterns journal December 1998
Stable and unstable attractors in Boolean networks journal November 2005
Being Bayesian About Network Structure. A Bayesian Approach to Structure Discovery in Bayesian Networks journal January 2003
Steady-state probabilities for attractors in probabilistic Boolean networks journal October 2005
Reverse engineering of regulatory networks in human B cells journal March 2005
Superpolynomial Growth in the Number of Attractors in Kauffman Networks journal March 2003
Network component analysis: Reconstruction of regulatory signals in biological systems journal December 2003
Reconstructing the pathways of a cellular system from genome-scale signals by using matrix and tensor computations journal November 2005
Numerical Linear Algebra book January 1997

Cited By (38)

Boolean modeling in systems biology: an overview of methodology and applications journal September 2012
The correlation between architecture and mRNA abundance in the genetic regulatory network of Escherichia coli journal July 2007
Evaluation and improvement of the regulatory inference for large co-expression networks with limited sample size journal June 2017
A new mathematical approach for qualitative modeling of the insulin-TOR-MAPK network journal January 2013
Analysis and Practical Guideline of Constraint-Based Boolean Method in Genetic Network Inference journal January 2012
Adapted Boolean network models for extracellular matrix formation journal July 2009
Deriving a Boolean dynamics to reveal macrophage activation with in vitro temporal cytokine expression profiles journal December 2019
Boolean modeling of transcriptome data reveals novel modes of heterotrimeric G‐protein action journal January 2010
Data- and knowledge-based modeling of gene regulatory networks: an update text January 2015
Comparative analysis of the Spirulina platensis subcellular proteome in response to low- and high-temperature stresses: uncovering cross-talk of signaling components journal July 2011
Sequential Logic Model Deciphers Dynamic Transcriptional Control of Gene Expressions journal August 2007
An Evaluation of Methods for Inferring Boolean Networks from Time-Series Data journal June 2013
Gene Regulatory Network Inference from Multifactorial Perturbation Data Using both Regression and Correlation Analyses journal September 2012
Dynamical pathway analysis journal January 2008
Efficient parameter search for qualitative models of regulatory networks using symbolic model checking journal September 2010
A novel parametric approach to mine gene regulatory relationship from microarray datasets journal December 2010
Repairing Boolean logical models from time-series data using Answer Set Programming journal March 2019
Proceedings of the 2009 MidSouth Computational Biology and Bioinformatics Society (MCBIOS) Conference journal October 2009
Big Data Analytics in Healthcare book January 2021
Inference of Gene Regulatory Networks Using Time-Series Data: A Survey journal September 2009
Inferring Gene Regulatory Networks Using Hybrid Parallel Computing book July 2018
Big Data Analytics in Healthcare journal January 2015
Reconstruction of a gene regulatory network of the induced systemic resistance defense response in Arabidopsis using boolean networks journal April 2020
Validation of gene regulatory network inference based on controllability journal January 2013
Gene perturbation and intervention in context-sensitive stochastic Boolean networks journal May 2014
Polynomial-Time Algorithm for Controllability Test of a Class of Boolean Biological Networks journal January 2010
Kinetic models of hematopoietic differentiation journal April 2018
Stochastic Boolean networks: An efficient approach to modeling gene regulatory networks journal January 2012
Inferring cluster-based networks from differently stimulated multiple time-course gene expression data journal March 2010
Network modeling of signal transduction: establishing the global view journal November 2008
Subcellular proteomic characterization of the high-temperature stress response of the cyanobacterium Spirulina platensis journal January 2009
Big Data Analytics in Healthcare book October 2020
Differential Dynamic Properties of Scleroderma Fibroblasts in Response to Perturbation of Environmental Stimuli journal February 2008
Neutral space analysis for a Boolean network model of the fission yeast cell cycle network journal January 2014
A Kalman-Filter Based Approach to Identification of Time-Varying Gene Regulatory Networks journal October 2013
Proceedings of the 2008 MidSouth Computational Biology and Bioinformatics Society (MCBIOS) Conference journal August 2008
A Relative Variation-Based Method to Unraveling Gene Regulatory Networks journal February 2012
Refining Ensembles of Predicted Gene Regulatory Networks Based on Characteristic Interaction Sets journal February 2014

Similar Records

Boolean dynamics of genetic regulatory networks inferred from microarray time series data
Journal Article · Tue Jan 30 23:00:00 EST 2007 · Bioinformatics · OSTI ID:1427005
Polysulfide Speciation in the Bulk Electrolyte of a Lithium Sulfur Battery Supplemental.
Program Document · Wed Feb 28 23:00:00 EST 2018 · Journal of the Electrochemical Society · OSTI ID:1432473
Dynamic Compressive Strength of Rock Salts
Program Document · Fri Sep 01 00:00:00 EDT 2017 · OSTI ID:1429838

Related Subjects