High-resolution ab initio three-dimensional x-ray diffraction microscopy

Chapman, Henry N.; Barty, Anton; Marchesini, Stefano; Noy, Aleksandr; Hau-Riege, Stefan P.; Cui, Congwu; Howells, Malcolm R.; Rosen, Rachel; He, Haifeng; Spence, John C. H.; Weierstall, Uwe; Beetz, Tobias; Jacobsen, Chris; Shapiro, David

doi:10.1364/JOSAA.23.001179

High-resolution ab initio three-dimensional x-ray diffraction microscopy

Journal Article · Sun Jan 01 00:00:00 EST 2006 · Journal of the Optical Society of America. A, Optics, Image Science, and Vision

DOI:https://doi.org/10.1364/JOSAA.23.001179· OSTI ID:1164141

Chapman, Henry N. ^[1]; Barty, Anton ^[2]; Marchesini, Stefano ^[2]; Noy, Aleksandr ^[2]; Hau-Riege, Stefan P. ^[3]; Cui, Congwu ^[3]; Howells, Malcolm R. ^[3]; Rosen, Rachel ^[3]; He, Haifeng ^[4]; Spence, John C. H. ^[4]; Weierstall, Uwe ^[4]; Beetz, Tobias ^[5]; Jacobsen, Chris ^[5]; Shapiro, David ^[5]

Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States); Argonne National Laboratory
Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States)
Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
Arizona State Univ., Tempe, AZ (United States) Dept. Physics and Astronomy
Stony Brook Univ., NY (United States) Dept. Physics and Astronomy

Coherent x-ray diffraction microscopy is a method of imaging nonperiodic isolated objects at resolutions limited, in principle, by only the wavelength and largest scattering angles recorded. We demonstrate x-ray diffraction imaging with high resolution in all three dimensions, as determined by a quantitative analysis of the reconstructed volume images. These images are retrieved from the three-dimensional diffraction data using no a priori knowledge about the shape or composition of the object, which has never before been demonstrated on a nonperiodic object. We also construct two-dimensional images of thick objects with greatly increased depth of focus (without loss of transverse spatial resolution). These methods can be used to image biological and materials science samples at high resolution with x-ray undulator radiation and establishes the techniques to be used in atomic-resolution ultrafast imaging at x-ray free-electron laser sources.

View Accepted Manuscript (DOE)

Research Organization:: Stony Brook Univ., NY (United States)

Sponsoring Organization:: USDOE Office of Science (SC), Basic Energy Sciences (BES) (SC-22)

Grant/Contract Number:: FG02-04ER46128

OSTI ID:: 1164141

Journal Information:: Journal of the Optical Society of America. A, Optics, Image Science, and Vision, Journal Name: Journal of the Optical Society of America. A, Optics, Image Science, and Vision Journal Issue: 5 Vol. 23; ISSN 1084-7529

Publisher:: Optical Society of America (OSA)Copyright Statement

Country of Publication:: United States

Language:: English

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Versatility of a hard X-ray Kirkpatrick-Baez focus characterized by ptychography Giewekemeyer, K.; Wilke, R. N.; Osterhoff, M. Deutsches Elektronen-Synchrotron, DESY, Hamburg https://doi.org/10.3204/phppubdb-26500	text	January 2013
Macromolecular diffractive imaging using imperfect crystals Ayyer, Kartik; Yefanov, Oleksandr; Oberthür, Dominik Deutsches Elektronen-Synchrotron, DESY, Hamburg https://doi.org/10.3204/pubdb-2016-01028	text	January 2016
A comprehensive simulation framework for imaging single particles and biomolecules at the European X-ray Free-Electron Laser Yoon, Chun Hong; Yurkov, Mikhail; Schneidmiller, Evgeny Alexanrdovich Deutsches Elektronen-Synchrotron, DESY, Hamburg https://doi.org/10.3204/pubdb-2016-01805	text	January 2016
Single-shot diffraction data from the Mimivirus particle using an X-ray free-electron laser Ekeberg, Tomas; Svenda, Martin; Seibert, M. Marvin Deutsches Elektronen-Synchrotron, DESY, Hamburg https://doi.org/10.3204/pubdb-2016-05742	text	January 2016
Bragg projection ptychography on niobium phase domains Burdet, Nicolas; Shi, Xiaowen; Clark, Jesse N. Deutsches Elektronen-Synchrotron, DESY, Hamburg https://doi.org/10.3204/pubdb-2018-00378	text	January 2017
Quantitative ptychographic bio-imaging in the water window Rose, Max; Senkbeil, Tobias; Von Gundlach, Andreas Deutsches Elektronen-Synchrotron, DESY, Hamburg https://doi.org/10.3204/pubdb-2018-00468	text	January 2018
Single-particle imaging without symmetry constraints at an X-ray free-electron laser Rose, Max; Bobkov, Sergey; Ayyer, Kartik Deutsches Elektronen-Synchrotron, DESY, Hamburg https://doi.org/10.3204/pubdb-2018-03083	text	January 2018
Structure Determination by Continuous Diffraction from Imperfect Crystals Ayyer, Kartik; Yefanov, Oleksandr; Chapman, Henry N. Deutsches Elektronen-Synchrotron, DESY, Hamburg https://doi.org/10.3204/pubdb-2019-00073	text	January 2018
Computed stereo lensless X-ray imaging Duarte, J.; Cassin, R.; Huijts, J. Deutsches Elektronen-Synchrotron, DESY, Hamburg https://doi.org/10.3204/pubdb-2019-02643	text	January 2019
Towards a quantitative determination of strain in Bragg Coherent X-ray Diffraction Imaging: artefacts and sign convention in reconstructions Carnis, Jerome; Gao, Lu; Labat, Stéphane Deutsches Elektronen-Synchrotron, DESY, Hamburg https://doi.org/10.3204/pubdb-2020-00283	text	January 2019
Bimodal Porosity and Stability of a TiO2 Gig-Lox Sponge Infiltrated with Methyl-Ammonium Lead Iodide Perovskite Sanzaro, Salvatore; Zontone, Federico; Grosso, David Nanomaterials, Vol. 9, Issue 9 https://doi.org/10.3390/nano9091300	journal	September 2019
X-ray ptychographic computed tomography at 16 nm isotropic 3D resolution Holler, Mirko; Diaz, Ana; Guizar-Sicairos, Manuel ETH Zurich https://doi.org/10.3929/ethz-b-000080749	text	January 2014
Considerations for three-dimensional image reconstruction from experimental data in coherent diffractive imaging Lundholm, Ida V.; Sellberg, Jonas A.; Ekeberg, Tomas ETH Zurich https://doi.org/10.3929/ethz-b-000369231	text	January 2018
Oversampling smoothness (OSS): an effective algorithm for phase retrieval of noisy diffraction intensities Rodriguez, Jose A.; Xu, Rui; Chen, Chien-Chun arXiv https://doi.org/10.48550/arxiv.1211.4519	text	January 2012
High Speed and High Resolution Table-Top Nanoscale Imaging Tadesse, G. K.; Klas, R.; Demmler, S. arXiv https://doi.org/10.48550/arxiv.1605.02909	text	January 2016
Sparse recovery of undersampled intensity patterns for coherent diffraction imaging at high X-ray energies Maddali, Siddharth; Calvo-Almazan, Irene; Almer, Jonathan arXiv https://doi.org/10.48550/arxiv.1712.01108	text	January 2017
On phase retrieval via matrix completion and the estimation of low rank PSD matrices Carlsson, Marcus; Gerosa, Daniele arXiv https://doi.org/10.48550/arxiv.1907.09537	text	January 2019
Practical algorithms for simulation and reconstruction of digital in-line holograms Latychevskaia, Tatiana; Fink, Hans-Werner Optical Society of America https://doi.org/10.5167/uzh-109953	text	January 2015
Imaging outside the box: Resolution enhancement in X-ray coherent diffraction imaging by extrapolation of diffraction patterns Latychevskaia, Tatiana; Chushkin, Yuriy; Zontone, Federico American Institute of Physics https://doi.org/10.5167/uzh-119709	text	January 2015
Three-dimensional imaging of vortex structure in a ferroelectric nanoparticle driven by an electric field Karpov, D.; Liu, Z.; Rolo, T. D. S. Karlsruhe https://doi.org/10.5445/ir/1000073887	text	January 2017
Extreme ultraviolet time-resolved photoelectron spectroscopy of aqueous aniline solution: enhanced surface concentration and pump-induced space charge effect West, Christopher W.; Nishitani, Junichi; Higashimura, Chika Taylor & Francis https://doi.org/10.6084/m9.figshare.12062994.v1	text	January 2020
Time-domain ptychography Rohwer, Erich; Neethling, Pieter; Feurer, Thomas American Physical Society https://doi.org/10.7892/boris.74987	text	January 2015

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