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Title: Mechanism of Oxidation of Ethane to Ethanol at Iron(IV)–Oxo Sites in Magnesium-Diluted Fe2(dobdc)

Journal Article · · Journal of the American Chemical Society
DOI:https://doi.org/10.1021/jacs.5b00382· OSTI ID:2311154
 [1];  [1];  [2];  [1];  [3];  [4];  [1];  [1]
  1. University of Minnesota, Minneapolis, MN (United States)
  2. University of Minnesota, Minneapolis, MN (United States); University of Wisconsin-Eau Claire, WI (United States)
  3. University of California, Berkeley, CA (United States); University of Minnesota, Minneapolis, MN (United States)
  4. University of California, Berkeley, CA (United States); Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States); University of Minnesota, Minneapolis, MN (United States)

The catalytic properties of the metal–organic framework Fe2(dobdc), containing open Fe(II) sites, include hydroxylation of phenol by pure Fe2(dobdc) and hydroxylation of ethane by its magnesium-diluted analogue, Fe0.1Mg1.9(dobdc). In earlier work, the latter reaction was proposed to occur through a redox mechanism involving the generation of an iron(IV)–oxo species, which is an intermediate that is also observed or postulated (depending on the case) in some heme and non-heme enzymes and their model complexes. In the present work, we present a detailed mechanism by which the catalytic material, Fe0.1Mg1.9(dobdc), activates the strong C–H bonds of ethane. Kohn–Sham density functional and multireference wave function calculations have been performed to characterize the electronic structure of key species. We show that the catalytic non-heme-Fe hydroxylation of the strong C–H bond of ethane proceeds by a quintet single-state s-attack pathway after the formation of highly reactive iron–oxo intermediate. The mechanistic pathway involves three key transition states, with the highest activation barrier for the transfer of oxygen from N2O to the Fe(II) center. The uncatalyzed reaction, where nitrous oxide directly oxidizes ethane to ethanol is found to have an activation energy of 280 kJ/mol, in contrast to 82 kJ/mol for the slowest step in the iron(IV)–oxo catalytic mechanism. Futhermore, the energetics of the C–H bond activation steps of ethane and methane are also compared. Dehydrogenation and dissociation pathways that can compete with the formation of ethanol were shown to involve higher barriers than the hydroxylation pathway.

Research Organization:
Univ. of Minnesota, Minneapolis, MN (United States)
Sponsoring Organization:
USDOE Office of Science (SC), Basic Energy Sciences (BES). Chemical Sciences, Geosciences & Biosciences Division (CSGB)
Grant/Contract Number:
SC0008688; FG02-17ER16362
OSTI ID:
2311154
Journal Information:
Journal of the American Chemical Society, Vol. 137, Issue 17; ISSN 0002-7863
Publisher:
American Chemical Society (ACS)Copyright Statement
Country of Publication:
United States
Language:
English

References (93)

Dioxygen Activation by Metalloenzymes and Models journal July 2007
The biology and chemistry of high-valent iron–oxo and iron–nitrido complexes journal January 2012
High-valent iron in chemical and biological oxidations journal April 2006
Status of Reactive Non-Heme Metal–Oxygen Intermediates in Chemical and Enzymatic Reactions journal August 2014
Stabilization of mononuclear five-coordinate iron(IV) journal July 1990
A Putative Monooxygenase Mimic Which Functions via Well-Disguised Free Radical Chemistry1 journal November 1997
Aqueous FeIVO: Spectroscopic Identification and Oxo-Group Exchange journal October 2005
A Thiolate-Ligated Nonheme Oxoiron(IV) Complex Relevant to Cytochrome P450 journal November 2005
Chemical and Spectroscopic Evidence for an FeV-Oxo Complex journal February 2007
Formation, Structure, and EPR Detection of a High Spin Fe IV —Oxo Species Derived from Either an Fe III —Oxo or Fe III —OH Complex journal September 2010
A mononuclear nonheme iron(iv)-oxo complex which is more reactive than cytochrome P450 model compound I journal January 2011
The Road to Non-Heme Oxoferryls and Beyond journal July 2007
High-Valent Iron(IV)–Oxo Complexes of Heme and Non-Heme Ligands in Oxygenation Reactions journal July 2007
Crystallographic and Spectroscopic Characterization of a Nonheme Fe(IV)&cjs0811;O Complex journal February 2003
An FeIVO complex of a tetradentate tripodal nonheme ligand journal March 2003
Evidence for Hydrogen Abstraction from C1 of Taurine by the High-Spin Fe(IV) Intermediate Detected during Oxygen Activation by Taurine:α-Ketoglutarate Dioxygenase (TauD) journal October 2003
Spectroscopic and Computational Evaluation of the Structure of the High-Spin Fe(IV)-Oxo Intermediates in Taurine: α-Ketoglutarate Dioxygenase from Escherichia coli and Its His99Ala Ligand Variant journal May 2007
Spectroscopic and Quantum Chemical Studies on Low-Spin Fe IV O Complexes:  Fe−O Bonding and Its Contributions to Reactivity journal December 2007
Peroxo and oxo intermediates in mononuclear nonheme iron enzymes and related active sites journal February 2009
Two-State Reactivity in Alkane Hydroxylation by Non-Heme Iron−Oxo Complexes journal June 2006
Nonheme oxo-iron(IV) intermediates form an oxyl radical upon approaching the C-H bond activation transition state journal January 2011
Mononuclear (Nitrido)iron(V) and (Oxo)iron(IV) Complexes via Photolysis of [(cyclam-acetato)Fe III (N 3 )] + and Ozonolysis of [(cyclam-acetato)Fe III (O 3 SCF 3 )] + in Water/Acetone Mixtures journal November 2000
Reactive Intermediates in Oxygenation Reactions with Mononuclear Nonheme Iron Catalysts journal January 2009
Ab Initio QM/MM Calculations Show an Intersystem Crossing in the Hydrogen Abstraction Step in Dealkylation Catalyzed by AlkB journal May 2013
Alternative Pathway for the Reaction Catalyzed by DNA Dealkylase AlkB from Ab Initio QM/MM Calculations journal October 2014
Reactivity of Aqueous Fe(IV) in Hydride and Hydrogen Atom Transfer Reactions journal October 2004
The Role of Equatorial and Axial Ligands in Promoting the Activity of Non-Heme Oxidoiron(IV) Catalysts in Alkane Hydroxylation journal July 2007
A Synthetic High-Spin Oxoiron(IV) Complex: Generation, Spectroscopic Characterization, and Reactivity journal May 2009
Theoretical predictions of a highly reactive non-heme Fe(iv)O complex with a high-spin ground state journal January 2010
A More Reactive Trigonal-Bipyramidal High-Spin Oxoiron(IV) Complex with a cis-Labile Site journal August 2011
Oxidation of ethane to ethanol by N2O in a metal–organic framework with coordinatively unsaturated iron(II) sites journal May 2014
Experiment and Theory Reveal the Fundamental Difference between Two-State and Single-State Reactivity Patterns in Nonheme FeIVO versus RuIVO Oxidants journal April 2008
A Two-State Reactivity Rationale for Counterintuitive Axial Ligand Effects on the CH Activation Reactivity of Nonheme FeIVO Oxidants journal February 2008
Two-State Reactivity as a New Concept in Organometallic Chemistry § journal March 2000
An anatomy of the two-state reactivity concept: Personal reminiscences in memoriam of Detlef Schröder journal November 2013
Non-Heme Fe(IV)–Oxo Intermediates journal July 2007
The First Direct Characterization of a High-Valent Iron Intermediate in the Reaction of an α-Ketoglutarate-Dependent Dioxygenase:  A High-Spin Fe(IV) Complex in Taurine/α-Ketoglutarate Dioxygenase (TauD) from Escherichia coli journal June 2003
Direct spectroscopic detection of a C-H-cleaving high-spin Fe(IV) complex in a prolyl-4-hydroxylase journal September 2006
Two interconverting Fe(IV) intermediates in aliphatic chlorination by the halogenase CytC3 journal January 2007
Direct Spectroscopic Evidence for a High-Spin Fe(IV) Intermediate in Tyrosine Hydroxylase journal September 2007
Evidence for an Alternative to the Oxygen Rebound Mechanism in C–H Bond Activation by Non-Heme Fe IV O Complexes journal December 2012
Fatty acid desaturases: selecting the dehydrogenation channel journal January 2004
Oxygen Economy of Cytochrome P450:  What Is the Origin of the Mixed Functionality as a Dehydrogenase−Oxidase Enzyme Compared with Its Normal Function? journal March 2004
Diverting non-haem iron catalysed aliphatic C–H hydroxylations towards desaturations journal January 2011
Computational enzymology journal January 2010
Quantum Mechanical Investigations of Organocatalysis: Mechanisms, Reactivities, and Selectivities journal August 2011
Quantum Mechanical Modeling of Catalytic Processes journal July 2011
A Theory for Bioinorganic Chemical Reactivity of Oxometal Complexes and Analogous Oxidants: The Exchange and Orbital-Selection Rules journal December 2012
Exchange-enhanced reactivity in bond activation by metal–oxo enzymes and synthetic reagents journal December 2010
The Fundamental Role of Exchange-Enhanced Reactivity in CH Activation by S=2 Oxo Iron(IV) Complexes journal March 2010
Relationships between bond energies in coordinatively unsaturated and coordinatively saturated transition-metal complexes: a quantitative guide for single, double, and triple bonds journal October 1988
Density Functional Theory of Electronic Structure journal January 1996
Adsorption on Fe-MOF-74 for C1–C3 Hydrocarbon Separation journal June 2013
The M06 suite of density functionals for main group thermochemistry, thermochemical kinetics, noncovalent interactions, excited states, and transition elements: two new functionals and systematic testing of four M06-class functionals and 12 other functionals journal July 2007
Balanced basis sets of split valence, triple zeta valence and quadruple zeta valence quality for H to Rn: Design and assessment of accuracy journal January 2005
Accurate Coulomb-fitting basis sets for H to Rn journal January 2006
Performance of Effective Core Potentials for Density Functional Calculations on 3d Transition Metals journal December 2011
Ab Initio Calculation of Vibrational Absorption and Circular Dichroism Spectra Using Density Functional Force Fields journal November 1994
Attractive Noncovalent Interactions in the Mechanism of Grubbs Second-Generation Ru Catalysts for Olefin Metathesis journal May 2007
Benchmark Energetic Data in a Model System for Grubbs II Metathesis Catalysis and Their Use for the Development, Assessment, and Validation of Electronic Structure Methods journal January 2009
Ligand Effects on the Regioselectivity of Rhodium-Catalyzed Hydroformylation: Density Functional Calculations Illuminate the Role of Long-Range Noncovalent Interactions journal August 2014
Performances of DFT methods implemented in G09 for simulations of the dispersion-dominated CH-π in ligand–protein complex: A case study with glycerol-GDH journal March 2015
The Right Computational Recipe for Olefin Metathesis with Ru-Based Catalysts: The Whole Mechanism of Ring-Closing Olefin Metathesis journal September 2014
Dispersion Makes the Difference: Bisligated Transition States Found for the Oxidative Addition of Pd(P t Bu 3 ) 2 to Ar-OSO 2 R and Dispersion-Controlled Chemoselectivity in Reactions with Pd[P( i Pr)( t Bu 2 )] 2 journal December 2014
Charge Model 5: An Extension of Hirshfeld Population Analysis for the Accurate Description of Molecular Interactions in Gaseous and Condensed Phases
  • Marenich, Aleksandr V.; Jerome, Steven V.; Cramer, Christopher J.
  • Journal of Chemical Theory and Computation, Vol. 8, Issue 2, p. 527-541 https://doi.org/10.1021/ct200866d
journal February 2012
MCSCF optimization through combined use of natural orbitals and the brillouin-levy-berthier theorem journal November 1979
 -Frontier molecular orbitals in S = 2 ferryl species and elucidation of their contributions to reactivity journal August 2012
Hydrocarbon Separations in a Metal-Organic Framework with Open Iron(II) Coordination Sites journal March 2012
Single-Ion Magnetic Anisotropy and Isotropic Magnetic Couplings in the Metal–Organic Framework Fe 2 (dobdc) journal August 2013
An Fe2IVO2 Diamond Core Structure for the Key Intermediate Q of Methane Monooxygenase journal January 1997
Second-order perturbation theory with a CASSCF reference function journal July 1990
Heme Enzyme Structure and Function journal January 2014
Analysis of Reaction Channels for Alkane Hydroxylation by Nonheme Iron(IV)-Oxo Complexes journal July 2010
Modeling C–H Abstraction Reactivity of Nonheme Fe(IV)O Oxidants with Alkanes: What Role Do Counter Ions Play? journal September 2011
Does the TauD Enzyme Always Hydroxylate Alkanes, While an Analogous Synthetic Non-Heme Reagent Always Desaturates Them? journal December 2010
Electronic structure analysis of multistate reactivity in transition metal catalyzed reactions: the case of C–H bond activation by non-heme iron(iv)–oxo cores journal January 2013
Bond Dissociation Energies of Organic Molecules journal April 2003
A Correlation of Reaction Rates journal January 1955
Exact tunneling calculations journal April 1971
The path of chemical reactions - the IRC approach journal December 1981
Accurate reaction paths using a Hessian based predictor–corrector integrator journal June 2004
Using Hessian Updating To Increase the Efficiency of a Hessian Based Predictor-Corrector Reaction Path Following Method journal October 2004
Site-Specific CO2 Adsorption and Zero Thermal Expansion in an Anisotropic Pore Network journal December 2011
Generalized Gradient Approximation Made Simple journal October 1996
Ab initiomolecular dynamics for liquid metals journal January 1993
Ab initio molecular-dynamics simulation of the liquid-metal–amorphous-semiconductor transition in germanium journal May 1994
Efficiency of ab-initio total energy calculations for metals and semiconductors using a plane-wave basis set journal July 1996
Efficient iterative schemes for ab initio total-energy calculations using a plane-wave basis set journal October 1996
Computational Thermochemistry: Scale Factor Databases and Scale Factors for Vibrational Frequencies Obtained from Electronic Model Chemistries journal August 2010
Systematically convergent basis sets for transition metals. I. All-electron correlation consistent basis sets for the 3d elements Sc–Zn journal August 2005
MOLCAS 7: The Next Generation journal January 2010
Main Group Atoms and Dimers Studied with a New Relativistic ANO Basis Set December 2003
New Relativistic ANO Basis Sets for Transition Metal Atoms journal July 2005