MultiQC: summarize analysis results for multiple tools and samples in a single report
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journal
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June 2016 |
Accurate read-based metagenome characterization using a hierarchical suite of unique signatures
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journal
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March 2015 |
Influence of root structure on root survivorship: an analysis of 18 tree species using a minirhizotron method
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journal
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May 2011 |
Root anatomy, morphology, and longevity among root orders in Vaccinium corymbosum (Ericaceae)
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journal
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December 2008 |
QUAST: quality assessment tool for genome assemblies
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journal
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February 2013 |
DRAM for distilling microbial metabolism to automate the curation of microbiome function
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journal
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August 2020 |
Differential microbial assembly processes and co‐occurrence networks in the soil‐root continuum along an environmental gradient
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April 2022 |
Associations between species and groups of sites: indices and statistical inference
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journal
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December 2009 |
Phylogenetically and functionally diverse microorganisms reside under the Ross Ice Shelf
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journal
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January 2022 |
Nutrient Concentrations in fine Roots
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journal
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January 2000 |
Nitrogen storage forms in nine boreal understorey plant species
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journal
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May 1997 |
Huanglongbing impairs the rhizosphere-to-rhizoplane enrichment process of the citrus root-associated microbiome
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journal
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August 2017 |
Influence of Plant Fraction, Soil, and Plant Species on Microbiota: a Multikingdom Comparison
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journal
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February 2020 |
Structure, variation, and assembly of the root-associated microbiomes of rice
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journal
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January 2015 |
Redefining fine roots improves understanding of below-ground contributions to terrestrial biosphere processes
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journal
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March 2015 |
Resource availability influences the diversity of a functional group of heterotrophic soil bacteria
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journal
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September 2008 |
WGCNA: an R package for weighted correlation network analysis
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journal
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December 2008 |
Assembly and ecological function of the root microbiome across angiosperm plant species
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journal
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January 2018 |
Diel metabolomics analysis of a hot spring chlorophototrophic microbial mat leads to new hypotheses of community member metabolisms
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journal
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April 2015 |
MPLEx: a Robust and Universal Protocol for Single-Sample Integrative Proteomic, Metabolomic, and Lipidomic Analyses
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journal
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May 2016 |
Hydrocarbon substrate richness impacts microbial abundance, microbiome composition, and hydrocarbon loss
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journal
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September 2021 |
MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph
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journal
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January 2015 |
Slow decomposition of lower order roots: a key mechanism of root carbon and nutrient retention in the soil
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journal
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January 2010 |
Minor revision to V4 region SSU rRNA 806R gene primer greatly increases detection of SAR11 bacterioplankton
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June 2015 |
Heterogeneity of individual roots within the fine root architecture: causal links between physiological and ecosystem functions
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journal
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April 2007 |
Defining the core Arabidopsis thaliana root microbiome
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journal
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August 2012 |
Predicting fine root lifespan from plant functional traits in temperate trees
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journal
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June 2012 |
Rhizosphere size and shape: Temporal dynamics and spatial stationarity
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journal
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August 2019 |
Functionally discrete fine roots differ in microbial assembly, microbial functional potential, and produced metabolites - code and sequence analysis
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text
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January 2023 |
mdatools – R package for chemometrics
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journal
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March 2020 |
phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data
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journal
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April 2013 |
Tree‐induced alterations to soil properties and rhizoplane‐associated bacteria following 23 years in a common garden
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January 2021 |
Normalization and microbial differential abundance strategies depend upon data characteristics
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journal
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March 2017 |
The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
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journal
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November 2012 |
KBase: The United States Department of Energy Systems Biology Knowledgebase
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journal
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July 2018 |
Fungal-specific PCR primers developed for analysis of the ITS region of environmental DNA extracts
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journal
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May 2005 |
Resource Availability Drives Responses of Soil Microbial Communities to Short-term Precipitation and Nitrogen Addition in a Desert Shrubland
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journal
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February 2018 |
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
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journal
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July 2019 |
Nitrification and nitrogen removal
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journal
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January 1977 |
Every base matters: assessing small subunit rRNA primers for marine microbiomes with mock communities, time series and global field samples: Primers for marine microbiome studies
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journal
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October 2015 |
Fast gapped-read alignment with Bowtie 2
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journal
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March 2012 |
FiehnLib: Mass Spectral and Retention Index Libraries for Metabolomics Based on Quadrupole and Time-of-Flight Gas Chromatography/Mass Spectrometry
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journal
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December 2009 |
ITS primers with enhanced specificity for basidiomycetes - application to the identification of mycorrhizae and rusts
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journal
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April 1993 |
Water Uptake and Hydraulics of the Root Hair Rhizosphere
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journal
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August 2008 |
Roots Shaping Their Microbiome: Global Hotspots for Microbial Activity
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journal
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August 2015 |
DADA2: High-resolution sample inference from Illumina amplicon data
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journal
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May 2016 |
Rhizoplane Bacteria and Plant Species Co-determine Phosphorus-Mediated Microbial Legacy Effect
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journal
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December 2019 |
Structural and functional differentiation of the root-associated bacterial microbiomes of perennial ryegrass
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journal
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July 2016 |
Methods for normalizing microbiome data: An ecological perspective
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journal
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November 2018 |
Endogenous and exogenous controls of root life span, mortality and nitrogen flux in a longleaf pine forest: root branch order predominates
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journal
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July 2008 |
Fine root morphological traits determine variation in root respiration of Quercus serrata
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journal
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February 2009 |
Taxonomy, Physiology, and Natural Products of Actinobacteria
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journal
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November 2015 |
Fine root Architecture of nine North American Trees
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journal
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May 2002 |
Decay rates of leaf litters from arbuscular mycorrhizal trees are more sensitive to soil effects than litters from ectomycorrhizal trees
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journal
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October 2015 |
Revealing structure and assembly cues for Arabidopsis root-inhabiting bacterial microbiota
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journal
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August 2012 |
Species- and community-level patterns in fine root traits along a 120 000-year soil chronosequence in temperate rain forest: Root trait shifts along soil chronosequence
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journal
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March 2011 |
The hierarchy of root branching order determines bacterial composition, microbial carrying capacity and microbial filtering
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journal
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April 2021 |
Physiological implications of arginine metabolism in plants
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journal
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July 2015 |
Rhizosphere bacteriome structure and functions
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journal
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February 2022 |
Anatomical traits associated with absorption and mycorrhizal colonization are linked to root branch order in twenty-three Chinese temperate tree species
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journal
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November 2008 |
PERMANOVA, ANOSIM, and the Mantel test in the face of heterogeneous dispersions: What null hypothesis are you testing?
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journal
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November 2013 |
MetaboliteDetector: Comprehensive Analysis Tool for Targeted and Nontargeted GC/MS Based Metabolome Analysis
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journal
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May 2009 |
UNITE: a database providing web-based methods for the molecular identification of ectomycorrhizal fungi: Methods
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journal
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March 2005 |
Diversity and heritability of the maize rhizosphere microbiome under field conditions
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journal
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April 2013 |
Functionally-explicit sampling can answer key questions about the specificity of plant–microbe interactions
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journal
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October 2022 |
Physical and microbial mechanisms of decomposition vary in importance among root orders and tree species with differing chemical and morphological traits
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journal
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September 2018 |
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
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journal
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December 2014 |
Structure and Functions of the Bacterial Microbiota of Plants
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journal
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April 2013 |
fastp: an ultra-fast all-in-one FASTQ preprocessor
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journal
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September 2018 |
Toward an Ecological Classification of soil Bacteria
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journal
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June 2007 |
Root exudate metabolites drive plant-soil feedbacks on growth and defense by shaping the rhizosphere microbiota
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journal
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July 2018 |
Root exudates increased arsenic mobility and altered microbial community in paddy soils
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journal
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May 2023 |