Comparative genomics analysis of drought response between obligate CAM and C3 photosynthesis plants

Hu, Rongbin; Zhang, Jin; Jawdy, Sara; Sreedasyam, Avinash; Lipzen, Anna; Wang, Mei; Ng, Vivian; Daum, Christopher; Keymanesh, Keykhosrow; Liu, Degao; Lu, Haiwei; Ranjan, Priya; Chen, Jin-Gui; Muchero, Wellington; Tschaplinski, Timothy J.; Tuskan, Gerald A.; Schmutz, Jeremy; Yang, Xiaohan

doi:10.1016/j.jplph.2022.153791

Title: Comparative genomics analysis of drought response between obligate CAM and C₃ photosynthesis plants

Journal Article · Mon Aug 08 00:00:00 EDT 2022 · Journal of Plant Physiology

DOI:https://doi.org/10.1016/j.jplph.2022.153791· OSTI ID:1923896

^[1];

^[2];

^[1];

^[3];

^[4]; Wang, Mei ^[4];

^[4];

^[4]; Keymanesh, Keykhosrow ^[4];

^[1];

^[5];

^[1]

Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States)
Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States); Zhejiang A & F University, Hangzhou (China)
HudsonAlpha Institute for Biotechnology, Huntsville, AL (United States)
Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
HudsonAlpha Institute for Biotechnology, Huntsville, AL (United States); Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)

Crassulacean acid metabolism (CAM) plants exhibit elevated drought and heat tolerance compared to C₃ and C₄ plants through an inverted pattern of day/night stomatal closure and opening for CO₂ assimilation. However, the molecular responses to water-deficit conditions remain unclear in obligate CAM species. In this study, we presented genome-wide transcription sequencing analysis using leaf samples of an obligate CAM species Kalanchoë fedtschenkoi under moderate and severe drought treatments at two-time points of dawn (2-h before the start of light period) and dusk (2-h before the dark period). Differentially expressed genes were identified in response to environmental drought stress and a whole genome wide co-expression network was created as well. We found that the expression of CAM-related genes was not regulated by drought stimuli in K. fedtschenkoi. Our comparative analysis revealed that CAM species (K. fedtschenkoi) and C₃ species (Arabidopsis thaliana, Populus deltoides ‘WV94’) share some common transcriptional changes in genes involved in multiple biological processes in response to drought stress, including ABA signaling and biosynthesis of secondary metabolites.

View Accepted Manuscript (DOE)

Cite

Export

Save

Research Organization:: Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States); Oak Ridge National Laboratory (ORNL), Oak Ridge, TN (United States)

Sponsoring Organization:: USDOE Office of Science (SC), Biological and Environmental Research (BER)

Grant/Contract Number:: AC02-05CH11231; SC0008834; AC05–00OR22725; AC05-00OR22725

OSTI ID:: 1923896

Alternate ID(s):: OSTI ID: 1883991

Journal Information:: Journal of Plant Physiology, Vol. 277; ISSN 0176-1617

Publisher:: ElsevierCopyright Statement

Country of Publication:: United States

Language:: English

References (83)

Plant Biosystems Design Research Roadmap 1.0 Yang, Xiaohan; Medford, June I.; Markel, Kasey BioDesign Research, Vol. 2020 https://doi.org/10.34133/2020/8051764	journal	December 2020
Light-responsive expression atlas reveals the effects of light quality and intensity in Kalanchoë fedtschenkoi, a plant with crassulacean acid metabolism Zhang, Jin; Hu, Rongbin; Sreedasyam, Avinash GigaScience, Vol. 9, Issue 3 https://doi.org/10.1093/gigascience/giaa018	journal	March 2020
Activity of guard cell anion channel SLAC1 is controlled by drought-stress signaling kinase-phosphatase pair Geiger, Dietmar; Scherzer, Sönke; Mumm, Patrick Proceedings of the National Academy of Sciences, Vol. 106, Issue 50 https://doi.org/10.1073/pnas.0912021106	journal	December 2009
Natural Variation in 9-Cis-Epoxycartenoid Dioxygenase 3 and ABA Accumulation Kalladan, Rajesh; Lasky, Jesse R.; Sharma, Sandeep Plant Physiology, Vol. 179, Issue 4 https://doi.org/10.1104/pp.18.01185	journal	February 2019
Effects of drought stress on growth and yield of barley Samarah, Nezar H. Agronomy for Sustainable Development, Vol. 25, Issue 1 https://doi.org/10.1051/agro:2004064	journal	January 2005
Exploiting the potential of plants with crassulacean acid metabolism for bioenergy production on marginal lands Borland, A. M.; Griffiths, H.; Hartwell, J. Journal of Experimental Botany, Vol. 60, Issue 10 https://doi.org/10.1093/jxb/erp118	journal	April 2009
Adjustments in CAM and enzymatic scavenging of H2O2 in juvenile plants of the epiphytic bromeliad Guzmania monostachia as affected by drought and rewatering Carvalho, Victória; Abreu, Maria E.; Mercier, Helenice Plant Physiology and Biochemistry, Vol. 113 https://doi.org/10.1016/j.plaphy.2017.01.024	journal	April 2017
The flavonoid biosynthetic pathway in plants: Function and evolution Koes, Ronald E.; Quattrocchio, Francesca; Mol, Joseph N. M. BioEssays, Vol. 16, Issue 2 https://doi.org/10.1002/bies.950160209	journal	February 1994
Transcript, protein and metabolite temporal dynamics in the CAM plant Agave Abraham, Paul E.; Yin, Hengfu; Borland, Anne M. Nature Plants, Vol. 2, Issue 12 https://doi.org/10.1038/nplants.2016.178	journal	November 2016
Shared expression of crassulacean acid metabolism (CAM) genes pre-dates the origin of CAM in the genus Yucca Heyduk, Karolina; Ray, Jeremy N.; Ayyampalayam, Saaravanaraj Journal of Experimental Botany, Vol. 70, Issue 22 https://doi.org/10.1093/jxb/erz105	journal	April 2019
TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions Kim, Daehwan; Pertea, Geo; Trapnell, Cole Genome Biology, Vol. 14, Issue 4 https://doi.org/10.1186/gb-2013-14-4-r36	journal	January 2013
WGCNA: an R package for weighted correlation network analysis Langfelder, Peter; Horvath, Steve BMC Bioinformatics, Vol. 9, Issue 1 https://doi.org/10.1186/1471-2105-9-559	journal	December 2008
NtMYB4 and NtCHS1 Are Critical Factors in the Regulation of Flavonoid Biosynthesis and Are Involved in Salinity Responsiveness Chen, Shuai; Wu, Fengyan; Li, Yiting Frontiers in Plant Science, Vol. 10 https://doi.org/10.3389/fpls.2019.00178	journal	February 2019
The interplay between miR156/SPL13 and DFR/WD40–1 regulate drought tolerance in alfalfa Feyissa, Biruk A.; Arshad, Muhammad; Gruber, Margaret Y. BMC Plant Biology, Vol. 19, Issue 1 https://doi.org/10.1186/s12870-019-2059-5	journal	October 2019
Abscisic acid and nitric oxide signaling in two different portions of detached leaves of Guzmania monostachia with CAM up-regulated by drought Mioto, Paulo Tamaso; Mercier, Helenice Journal of Plant Physiology, Vol. 170, Issue 11 https://doi.org/10.1016/j.jplph.2013.02.004	journal	July 2013
Agave as a model CAM crop system for a warming and drying world Stewart, J. Ryan Frontiers in Plant Science, Vol. 6 https://doi.org/10.3389/fpls.2015.00684	journal	September 2015
Expression Profiling of Flavonoid Biosynthesis Genes and Secondary Metabolites Accumulation in Populus under Drought Stress Ahmed, Umair; Rao, Muhammad Junaid; Qi, Cheng Molecules, Vol. 26, Issue 18 https://doi.org/10.3390/molecules26185546	journal	September 2021
Kalanchoë PPC1 Is Essential for Crassulacean Acid Metabolism and the Regulation of Core Circadian Clock and Guard Cell Signaling Genes Boxall, Susanna F.; Kadu, Nirja; Dever, Louisa V. The Plant Cell, Vol. 32, Issue 4 https://doi.org/10.1105/tpc.19.00481	journal	February 2020
Root‐specific expression of chickpea cytokinin oxidase/dehydrogenase 6 leads to enhanced root growth, drought tolerance and yield without compromising nodulation Khandal, Hitaishi; Gupta, Santosh Kumar; Dwivedi, Vikas Plant Biotechnology Journal, Vol. 18, Issue 11 https://doi.org/10.1111/pbi.13378	journal	September 2020
Reversible Burst of Transcriptional Changes during Induction of Crassulacean Acid Metabolism in Talinum triangulare Brilhaus, Dominik; Bräutigam, Andrea; Mettler-Altmann, Tabea Plant Physiology, Vol. 170, Issue 1 https://doi.org/10.1104/pp.15.01076	journal	November 2015
ABI5 Is a Regulator of Seed Maturation and Longevity in Legumes Zinsmeister, Julia; Lalanne, David; Terrasson, Emmanuel The Plant Cell, Vol. 28, Issue 11 https://doi.org/10.1105/tpc.16.00470	journal	November 2016
featureCounts: an efficient general purpose program for assigning sequence reads to genomic features Liao, Y.; Smyth, G. K.; Shi, W. Bioinformatics, Vol. 30, Issue 7 https://doi.org/10.1093/bioinformatics/btt656	journal	November 2013
Plant protein phosphatases 2C: from genomic diversity to functional multiplicity and importance in stress management Singh, Amarjeet; Pandey, Amita; Srivastava, Ashish K. Critical Reviews in Biotechnology, Vol. 36, Issue 6 https://doi.org/10.3109/07388551.2015.1083941	journal	September 2015
Crop Production under Drought and Heat Stress: Plant Responses and Management Options Fahad, Shah; Bajwa, Ali A.; Nazir, Usman Frontiers in Plant Science, Vol. 8 https://doi.org/10.3389/fpls.2017.01147	journal	June 2017
The influence of drought stress on growth, yield and yield components of selected maize genotypes Kamara, A. Y.; Menkir, A.; Badu-Apraku, B. The Journal of Agricultural Science, Vol. 141, Issue 1 https://doi.org/10.1017/S0021859603003423	journal	August 2003
The pineapple genome and the evolution of CAM photosynthesis Ming, Ray; VanBuren, Robert; Wai, Ching Man Nature Genetics, Vol. 47, Issue 12 https://doi.org/10.1038/ng.3435	journal	November 2015
Underwater CAM photosynthesis elucidated by Isoetes genome Wickell, David; Kuo, Li-Yaung; Yang, Hsiao-Pei Nature Communications, Vol. 12, Issue 1 https://doi.org/10.1038/s41467-021-26644-7	journal	November 2021
Enhancement of oxidative and drought tolerance in Arabidopsis by overaccumulation of antioxidant flavonoids Nakabayashi, Ryo; Yonekura-Sakakibara, Keiko; Urano, Kaoru The Plant Journal, Vol. 77, Issue 3 https://doi.org/10.1111/tpj.12388	journal	December 2013
Engineering crassulacean acid metabolism to improve water-use efficiency Borland, Anne M.; Hartwell, James; Weston, David J. Trends in Plant Science, Vol. 19, Issue 5 https://doi.org/10.1016/j.tplants.2014.01.006	journal	May 2014
Arabidopsis CBL-interacting protein kinase (CIPK6) is involved in plant response to salt/osmotic stress and ABA Chen, Liang; Wang, Qing-Qing; Zhou, Li Molecular Biology Reports, Vol. 40, Issue 8 https://doi.org/10.1007/s11033-013-2572-9	journal	May 2013
Biological Parts for Engineering Abiotic Stress Tolerance in Plants Lohani, Neeta; Singh, Mohan B.; Bhalla, Prem L. BioDesign Research, Vol. 2022 https://doi.org/10.34133/2022/9819314	journal	January 2022
Flavonoids and Isoflavonoids: From Plant Biology to Agriculture and Neuroscience Dixon, Richard A.; Pasinetti, Giulio M. Plant Physiology, Vol. 154, Issue 2 https://doi.org/10.1104/pp.110.161430	journal	October 2010
Crassulacean acid metabolism and fitness under water deficit stress: if not for carbon gain, what is facultative CAM good for? Herrera, Ana Annals of Botany, Vol. 103, Issue 4 https://doi.org/10.1093/aob/mcn145	journal	August 2008
Climate-resilient agroforestry: physiological responses to climate change and engineering of crassulacean acid metabolism (CAM) as a mitigation strategy: CAM engineering in trees Borland, Anne M.; Wullschleger, Stan D.; Weston, David J. Plant, Cell & Environment, Vol. 38, Issue 9 https://doi.org/10.1111/pce.12479	journal	December 2014
A roadmap for research on crassulacean acid metabolism (CAM) to enhance sustainable food and bioenergy production in a hotter, drier world Yang, Xiaohan; Cushman, John C.; Borland, Anne M. New Phytologist, Vol. 207, Issue 3 https://doi.org/10.1111/nph.13393	journal	July 2015
Comparative proteomics and metabolomics of JAZ7-mediated drought tolerance in Arabidopsis Meng, Li; Zhang, Tong; Geng, Sisi Journal of Proteomics, Vol. 196 https://doi.org/10.1016/j.jprot.2019.02.001	journal	March 2019
Global Synthesis of Drought Effects on Maize and Wheat Production Daryanto, Stefani; Wang, Lixin; Jacinthe, Pierre-André PLOS ONE, Vol. 11, Issue 5 https://doi.org/10.1371/journal.pone.0156362	journal	May 2016
Stomatal innovation and the rise of seed plants McAdam, Scott A. M.; Brodribb, Timothy J. Ecology Letters, Vol. 15, Issue 1 https://doi.org/10.1111/j.1461-0248.2011.01700.x	journal	October 2011
In vitro reconstitution of an abscisic acid signalling pathway Fujii, Hiroaki; Chinnusamy, Viswanathan; Rodrigues, Americo Nature, Vol. 462, Issue 7273 https://doi.org/10.1038/nature08599	journal	November 2009
ABA-Mediated Stomatal Response in Regulating Water Use during the Development of Terminal Drought in Wheat Saradadevi, Renu; Palta, Jairo A.; Siddique, Kadambot H. M. Frontiers in Plant Science, Vol. 8 https://doi.org/10.3389/fpls.2017.01251	journal	July 2017
De novo transcriptome assembly of drought tolerant CAM plants, Agave deserti and Agave tequilana Gross, Stephen M.; Martin, Jeffrey A.; Simpson, June BMC Genomics, Vol. 14, Issue 1 https://doi.org/10.1186/1471-2164-14-563	journal	January 2013
Time of day and network reprogramming during drought induced CAM photosynthesis in Sedum album Wai, Ching Man; Weise, Sean E.; Ozersky, Philip PLOS Genetics, Vol. 15, Issue 6 https://doi.org/10.1371/journal.pgen.1008209	journal	June 2019
Crassulacean Acid Metabolism. A Plastic Photosynthetic Adaptation to Arid Environments Cushman, John C. Plant Physiology, Vol. 127, Issue 4 https://doi.org/10.1104/pp.010818	journal	December 2001
Biosystems Design to Accelerate C ₃ -to-CAM Progression Yuan, Guoliang; Hassan, Md. Mahmudul; Liu, Degao BioDesign Research, Vol. 2020 https://doi.org/10.34133/2020/3686791	journal	October 2020
Functional constraints of CAM leaf anatomy: tight cell packing is associated with increased CAM function across a gradient of CAM expression Nelson, E. A.; Sage, R. F. Journal of Experimental Botany, Vol. 59, Issue 7 https://doi.org/10.1093/jxb/erm346	journal	June 2007
The Role and Regulation of ABI5 (ABA-Insensitive 5) in Plant Development, Abiotic Stress Responses and Phytohormone Crosstalk Skubacz, Anna; Daszkowska-Golec, Agata; Szarejko, Iwona Frontiers in Plant Science, Vol. 7 https://doi.org/10.3389/fpls.2016.01884	journal	December 2016
Molecular Mimicry Regulates ABA Signaling by SnRK2 Kinases and PP2C Phosphatases Soon, Fen-Fen; Ng, Ley-Moy; Zhou, X. Edward Science, Vol. 335, Issue 6064 https://doi.org/10.1126/science.1215106	journal	November 2011
Wheat CBL-interacting protein kinase 23 positively regulates drought stress and ABA responses Cui, Xiao-Yu; Du, Yong-Tao; Fu, Jin-dong BMC Plant Biology, Vol. 18, Issue 1 https://doi.org/10.1186/s12870-018-1306-5	journal	May 2018
The genome sequence of the orchid Phalaenopsis equestris Cai, Jing; Liu, Xin; Vanneste, Kevin Nature Genetics, Vol. 47, Issue 1 https://doi.org/10.1038/ng.3149	journal	November 2014
Abscisic Acid Mediates a Divergence in the Drought Response of Two Conifers Brodribb, T. J.; McAdam, S. A. M. PLANT PHYSIOLOGY, Vol. 162, Issue 3 https://doi.org/10.1104/pp.113.217877	journal	May 2013
ABA perception and signalling Raghavendra, Agepati S.; Gonugunta, Vijay K.; Christmann, Alexander Trends in Plant Science, Vol. 15, Issue 7 https://doi.org/10.1016/j.tplants.2010.04.006	journal	July 2010
MYB12 and MYB22 play essential roles in proanthocyanidin and flavonol synthesis in red-fleshed apple (Malus sieversiif. niedzwetzkyana) Wang, Nan; Xu, Haifeng; Jiang, Shenghui The Plant Journal, Vol. 90, Issue 2 https://doi.org/10.1111/tpj.13487	journal	February 2017
Phytobiome and Transcriptional Adaptation of Populus deltoides to Acute Progressive Drought and Cyclic Drought Garcia, Benjamin J.; Labbé, Jessy L.; Jones, Piet Phytobiomes Journal, Vol. 2, Issue 4 https://doi.org/10.1094/PBIOMES-04-18-0021-R	journal	January 2018
Physiological Consequences of Moisture Deficit Stress in Cotton Pettigrew, W. T. Crop Science, Vol. 44, Issue 4 https://doi.org/10.2135/cropsci2004.1265	journal	July 2004
Developmental Stage Specificity and the Role of Mitochondrial Metabolism in the Response of Arabidopsis Leaves to Prolonged Mild Osmotic Stress Skirycz, Aleksandra; De Bodt, Stefanie; Obata, Toshihiro Plant Physiology, Vol. 152, Issue 1 https://doi.org/10.1104/pp.109.148965	journal	November 2009
How Closely Do the δ ¹³ C Values of Crassulacean Acid Metabolism Plants Reflect the Proportion of CO ₂ Fixed during Day and Night? Winter, Klaus; Holtum, Joseph A. M. Plant Physiology, Vol. 129, Issue 4 https://doi.org/10.1104/pp.002915	journal	August 2002
Evolution along the crassulacean acid metabolism continuum Silvera, Katia; Neubig, Kurt M.; Whitten, W. Mark Functional Plant Biology, Vol. 37, Issue 11 https://doi.org/10.1071/FP10084	journal	January 2010
Type 2C protein phosphatases in plants: PP2Cs Fuchs, Stefan; Grill, Erwin; Meskiene, Irute FEBS Journal, Vol. 280, Issue 2 https://doi.org/10.1111/j.1742-4658.2012.08670.x	journal	July 2012
Structural insights into PYR/PYL/RCAR ABA receptors and PP2Cs Santiago, Julia; Dupeux, Florine; Betz, Katja Plant Science, Vol. 182 https://doi.org/10.1016/j.plantsci.2010.11.014	journal	January 2012
The miR156-SPL9-DFR pathway coordinates the relationship between development and abiotic stress tolerance in plants Cui, Long-Gang; Shan, Jun-Xiang; Shi, Min The Plant Journal, Vol. 80, Issue 6 https://doi.org/10.1111/tpj.12712	journal	November 2014
A dehydration-induced NAC protein, RD26, is involved in a novel ABA-dependent stress-signaling pathway Fujita, Miki; Fujita, Yasunari; Maruyama, Kyonoshin The Plant Journal, Vol. 39, Issue 6 https://doi.org/10.1111/j.1365-313X.2004.02171.x	journal	September 2004
Isolation and Functional Analysis of Arabidopsis Stress-Inducible NAC Transcription Factors That Bind to a Drought-Responsive cis -Element in the early responsive to dehydration stress 1 Promoter Tran, Lam-Son Phan; Nakashima, Kazuo; Sakuma, Yoh The Plant Cell, Vol. 16, Issue 9 https://doi.org/10.1105/tpc.104.022699	journal	August 2004
AtMYB12 regulates flavonoids accumulation and abiotic stress tolerance in transgenic Arabidopsis thaliana Wang, Feibing; Kong, Weili; Wong, Gary Molecular Genetics and Genomics, Vol. 291, Issue 4 https://doi.org/10.1007/s00438-016-1203-2	journal	March 2016
Functional Profiling Reveals That Only a Small Number of Phytochrome-Regulated Early-Response Genes inArabidopsisAre Necessary for Optimal Deetiolation Khanna, Rajnish; Shen, Yu; Toledo-Ortiz, Gabriela The Plant Cell, Vol. 18, Issue 9 https://doi.org/10.1105/tpc.106.042200	journal	August 2006
Molecular Basis of the Core Regulatory Network in ABA Responses: Sensing, Signaling and Transport Umezawa, T.; Nakashima, K.; Miyakawa, T. Plant and Cell Physiology, Vol. 51, Issue 11 https://doi.org/10.1093/pcp/pcq156	journal	October 2010
Transgenic Perturbation of the Decarboxylation Phase of Crassulacean Acid Metabolism Alters Physiology and Metabolism But Has Only a Small Effect on Growth Dever, Louisa V.; Boxall, Susanna F.; Kneřová, Jana Plant Physiology, Vol. 167, Issue 1 https://doi.org/10.1104/pp.114.251827	journal	November 2014
Abscisic acid: biosynthesis, inactivation, homoeostasis and signalling Dong, Ting; Park, Youngmin; Hwang, Inhwan Essays in Biochemistry, Vol. 58 https://doi.org/10.1042/bse0580029	journal	September 2015
Exploring C4–CAM plasticity within the Portulaca oleracea complex Ferrari, Renata Callegari; Cruz, Bruna Coelho; Gastaldi, Vinícius Daguano Scientific Reports, Vol. 10, Issue 1 https://doi.org/10.1038/s41598-020-71012-y	journal	August 2020
Whole plant responses, key processes, and adaptation to drought stress: the case of rice Lafitte, H.; Yongsheng, G.; Yan, S. Journal of Experimental Botany, Vol. 58, Issue 2 https://doi.org/10.1093/jxb/erl101	journal	November 2006
The Kalanchoë genome provides insights into convergent evolution and building blocks of crassulacean acid metabolism Yang, Xiaohan; Hu, Rongbin; Yin, Hengfu Nature Communications, Vol. 8, Issue 1 https://doi.org/10.1038/s41467-017-01491-7	journal	December 2017
Quality of winter wheat in relation to heat and drought shock after anthesis Balla, K.; Rakszegi, M.; Li, Z. Czech Journal of Food Sciences, Vol. 29, Issue No. 2 https://doi.org/10.17221/227/2010-CJFS	journal	March 2011
BiNGO: a Cytoscape plugin to assess overrepresentation of Gene Ontology categories in Biological Networks Maere, S.; Heymans, K.; Kuiper, M. Bioinformatics, Vol. 21, Issue 16 https://doi.org/10.1093/bioinformatics/bti551	journal	June 2005
Comparative genomics can provide new insights into the evolutionary mechanisms and gene function in CAM plants Yang, Xiaohan; Liu, Degao; Tschaplinski, Timothy J. Journal of Experimental Botany, Vol. 70, Issue 22 https://doi.org/10.1093/jxb/erz408	journal	September 2019
A Functional Genomics Approach Reveals CHE as a Component of the Arabidopsis Circadian Clock Pruneda-Paz, J. L.; Breton, G.; Para, A. Science, Vol. 323, Issue 5920 https://doi.org/10.1126/science.1167206	journal	March 2009
Gene co-expression reveals the modularity and integration of C4 and CAM in Portulaca Gilman, Ian S.; Moreno-Villena, Jose J.; Lewis, Zachary R. Plant Physiology, Vol. 189, Issue 2 https://doi.org/10.1093/plphys/kiac116	journal	March 2022
Large-scale mRNA expression profiling in the common ice plant, Mesembryanthemum crystallinum, performing C3 photosynthesis and Crassulacean acid metabolism (CAM) Cushman, John C.; Tillett, Richard L.; Wood, Joshua A. Journal of Experimental Botany, Vol. 59, Issue 7 https://doi.org/10.1093/jxb/ern008	journal	March 2008
Influence of extreme weather disasters on global crop production Lesk, Corey; Rowhani, Pedram; Ramankutty, Navin Nature, Vol. 529, Issue 7584 https://doi.org/10.1038/nature16467	journal	January 2016
RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome Li, Bo; Dewey, Colin N. BMC Bioinformatics, Vol. 12, Issue 1 https://doi.org/10.1186/1471-2105-12-323	journal	August 2011
Molecular cloning and functional analysis of 4-Coumarate:CoA ligase 4(4CL-like 1)from Fraxinus mandshurica and its role in abiotic stress tolerance and cell wall synthesis Chen, Xiaohui; Wang, Hengtao; Li, Xiaoyi BMC Plant Biology, Vol. 19, Issue 1 https://doi.org/10.1186/s12870-019-1812-0	journal	June 2019
The Roles of ROS and ABA in Systemic Acquired Acclimation Mittler, Ron; Blumwald, Eduardo The Plant Cell, Vol. 27, Issue 1 https://doi.org/10.1105/tpc.114.133090	journal	January 2015
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2 Love, Michael I.; Huber, Wolfgang; Anders, Simon Genome Biology, Vol. 15, Issue 12 https://doi.org/10.1186/s13059-014-0550-8	journal	December 2014
Comparative transcriptomic analysis reveals common molecular factors responsive to heat and drought stress in Agrostis stolonifera Xu, Yi; Huang, Bingru Scientific Reports, Vol. 8, Issue 1 https://doi.org/10.1038/s41598-018-33597-3	journal	October 2018
SnapShot: Abscisic Acid Signaling Hauser, Felix; Li, Zixing; Waadt, Rainer Cell, Vol. 171, Issue 7 https://doi.org/10.1016/j.cell.2017.11.045	journal	December 2017

Similar Records

Light-responsive expression atlas reveals the effects of light quality and intensity in Kalanchoë fedtschenkoi, a plant with crassulacean acid metabolism

Journal Article · Thu Mar 05 00:00:00 EST 2020 · GigaScience · OSTI ID:1923896

Zhang, Jin; Hu, Rongbin; Sreedasyam, Avinash; +15 more

Comparative Genomics Analysis Provides New Insight Into Molecular Basis of Stomatal Movement in Kalanchoë fedtschenkoi

Journal Article · Wed Mar 13 00:00:00 EDT 2019 · Frontiers in Plant Science · OSTI ID:1923896

Moseley, Robert C.; Tuskan, Gerald A.; Yang, Xiaohan

Phosphorylation of Phospho enol pyruvate Carboxylase Is Essential for Maximal and Sustained Dark CO ₂ Fixation and Core Circadian Clock Operation in the Obligate Crassulacean Acid Metabolism Species Kalanchoë fedtschenkoi

Journal Article · Fri Sep 08 00:00:00 EDT 2017 · The Plant Cell · OSTI ID:1923896

Boxall, Susanna F.; Dever, Louisa V.; Kneřová, Jana; +2 more

Related Subjects

59 BASIC BIOLOGICAL SCIENCES
crassulacean acid metabolism
Kalanchoë fedtschenkoi
drought stress
RNA-seq
abscisic acid
secondary metabolism

Title: Comparative genomics analysis of drought response between obligate CAM and C3 photosynthesis plants

Citation Formats

References (83)

Similar Records

Related Subjects

Title: Comparative genomics analysis of drought response between obligate CAM and C₃ photosynthesis plants